data_4PCE # _model_server_result.job_id AJvCyD498DxyPkc8nBXFow _model_server_result.datetime_utc '2025-01-10 06:21:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4PCE # _exptl.entry_id 4PCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PCE _cell.length_a 37.59 _cell.length_b 44.279 _cell.length_c 78.371 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 123 n n C1 C2 EDO sing 124 n n C1 H11 EDO sing 125 n n C1 H12 EDO sing 126 n n O1 HO1 EDO sing 127 n n C2 O2 EDO sing 128 n n C2 H21 EDO sing 129 n n C2 H22 EDO sing 130 n n O2 HO2 EDO sing 131 n n # _atom_sites.entry_id 4PCE _atom_sites.fract_transf_matrix[1][1] 0.026603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 301 EDO EDO . C 3 2N0 A 1 302 2 2N0 2N0 . D 4 HOH A 1 401 88 HOH HOH . D 4 HOH A 2 402 125 HOH HOH . D 4 HOH A 3 403 182 HOH HOH . D 4 HOH A 4 404 120 HOH HOH . D 4 HOH A 5 405 108 HOH HOH . D 4 HOH A 6 406 100 HOH HOH . D 4 HOH A 7 407 213 HOH HOH . D 4 HOH A 8 408 45 HOH HOH . D 4 HOH A 9 409 156 HOH HOH . D 4 HOH A 10 410 16 HOH HOH . D 4 HOH A 11 411 4 HOH HOH . D 4 HOH A 12 412 135 HOH HOH . D 4 HOH A 13 413 68 HOH HOH . D 4 HOH A 14 414 50 HOH HOH . D 4 HOH A 15 415 83 HOH HOH . D 4 HOH A 16 416 117 HOH HOH . D 4 HOH A 17 417 30 HOH HOH . D 4 HOH A 18 418 71 HOH HOH . D 4 HOH A 19 419 113 HOH HOH . D 4 HOH A 20 420 70 HOH HOH . D 4 HOH A 21 421 42 HOH HOH . D 4 HOH A 22 422 109 HOH HOH . D 4 HOH A 23 423 17 HOH HOH . D 4 HOH A 24 424 85 HOH HOH . D 4 HOH A 25 425 52 HOH HOH . D 4 HOH A 26 426 31 HOH HOH . D 4 HOH A 27 427 121 HOH HOH . D 4 HOH A 28 428 46 HOH HOH . D 4 HOH A 29 429 118 HOH HOH . D 4 HOH A 30 430 111 HOH HOH . D 4 HOH A 31 431 77 HOH HOH . D 4 HOH A 32 432 127 HOH HOH . D 4 HOH A 33 433 49 HOH HOH . D 4 HOH A 34 434 89 HOH HOH . D 4 HOH A 35 435 37 HOH HOH . D 4 HOH A 36 436 74 HOH HOH . D 4 HOH A 37 437 172 HOH HOH . D 4 HOH A 38 438 72 HOH HOH . D 4 HOH A 39 439 55 HOH HOH . D 4 HOH A 40 440 103 HOH HOH . D 4 HOH A 41 441 38 HOH HOH . D 4 HOH A 42 442 69 HOH HOH . D 4 HOH A 43 443 32 HOH HOH . D 4 HOH A 44 444 53 HOH HOH . D 4 HOH A 45 445 148 HOH HOH . D 4 HOH A 46 446 84 HOH HOH . D 4 HOH A 47 447 160 HOH HOH . D 4 HOH A 48 448 178 HOH HOH . D 4 HOH A 49 449 212 HOH HOH . D 4 HOH A 50 450 67 HOH HOH . D 4 HOH A 51 451 10 HOH HOH . D 4 HOH A 52 452 206 HOH HOH . D 4 HOH A 53 453 101 HOH HOH . D 4 HOH A 54 454 129 HOH HOH . D 4 HOH A 55 455 173 HOH HOH . D 4 HOH A 56 456 26 HOH HOH . D 4 HOH A 57 457 78 HOH HOH . D 4 HOH A 58 458 161 HOH HOH . D 4 HOH A 59 459 7 HOH HOH . D 4 HOH A 60 460 28 HOH HOH . D 4 HOH A 61 461 146 HOH HOH . D 4 HOH A 62 462 110 HOH HOH . D 4 HOH A 63 463 143 HOH HOH . D 4 HOH A 64 464 114 HOH HOH . D 4 HOH A 65 465 36 HOH HOH . D 4 HOH A 66 466 22 HOH HOH . D 4 HOH A 67 467 175 HOH HOH . D 4 HOH A 68 468 159 HOH HOH . D 4 HOH A 69 469 134 HOH HOH . D 4 HOH A 70 470 216 HOH HOH . D 4 HOH A 71 471 90 HOH HOH . D 4 HOH A 72 472 141 HOH HOH . D 4 HOH A 73 473 64 HOH HOH . D 4 HOH A 74 474 142 HOH HOH . D 4 HOH A 75 475 164 HOH HOH . D 4 HOH A 76 476 91 HOH HOH . D 4 HOH A 77 477 94 HOH HOH . D 4 HOH A 78 478 196 HOH HOH . D 4 HOH A 79 479 106 HOH HOH . D 4 HOH A 80 480 208 HOH HOH . D 4 HOH A 81 481 150 HOH HOH . D 4 HOH A 82 482 214 HOH HOH . D 4 HOH A 83 483 39 HOH HOH . D 4 HOH A 84 484 177 HOH HOH . D 4 HOH A 85 485 210 HOH HOH . D 4 HOH A 86 486 162 HOH HOH . D 4 HOH A 87 487 47 HOH HOH . D 4 HOH A 88 488 195 HOH HOH . D 4 HOH A 89 489 105 HOH HOH . D 4 HOH A 90 490 65 HOH HOH . D 4 HOH A 91 491 205 HOH HOH . D 4 HOH A 92 492 97 HOH HOH . D 4 HOH A 93 493 140 HOH HOH . D 4 HOH A 94 494 126 HOH HOH . D 4 HOH A 95 495 66 HOH HOH . D 4 HOH A 96 496 119 HOH HOH . D 4 HOH A 97 497 75 HOH HOH . D 4 HOH A 98 498 163 HOH HOH . D 4 HOH A 99 499 73 HOH HOH . D 4 HOH A 100 500 123 HOH HOH . D 4 HOH A 101 501 133 HOH HOH . D 4 HOH A 102 502 169 HOH HOH . D 4 HOH A 103 503 1 HOH HOH . D 4 HOH A 104 504 2 HOH HOH . D 4 HOH A 105 505 3 HOH HOH . D 4 HOH A 106 506 5 HOH HOH . D 4 HOH A 107 507 6 HOH HOH . D 4 HOH A 108 508 8 HOH HOH . D 4 HOH A 109 509 9 HOH HOH . D 4 HOH A 110 510 11 HOH HOH . D 4 HOH A 111 511 12 HOH HOH . D 4 HOH A 112 512 13 HOH HOH . D 4 HOH A 113 513 14 HOH HOH . D 4 HOH A 114 514 15 HOH HOH . D 4 HOH A 115 515 18 HOH HOH . D 4 HOH A 116 516 19 HOH HOH . D 4 HOH A 117 517 20 HOH HOH . D 4 HOH A 118 518 23 HOH HOH . D 4 HOH A 119 519 24 HOH HOH . D 4 HOH A 120 520 25 HOH HOH . D 4 HOH A 121 521 27 HOH HOH . D 4 HOH A 122 522 29 HOH HOH . D 4 HOH A 123 523 33 HOH HOH . D 4 HOH A 124 524 34 HOH HOH . D 4 HOH A 125 525 35 HOH HOH . D 4 HOH A 126 526 41 HOH HOH . D 4 HOH A 127 527 43 HOH HOH . D 4 HOH A 128 528 44 HOH HOH . D 4 HOH A 129 529 48 HOH HOH . D 4 HOH A 130 530 51 HOH HOH . D 4 HOH A 131 531 54 HOH HOH . D 4 HOH A 132 532 56 HOH HOH . D 4 HOH A 133 533 58 HOH HOH . D 4 HOH A 134 534 59 HOH HOH . D 4 HOH A 135 535 60 HOH HOH . D 4 HOH A 136 536 61 HOH HOH . D 4 HOH A 137 537 62 HOH HOH . D 4 HOH A 138 538 63 HOH HOH . D 4 HOH A 139 539 76 HOH HOH . D 4 HOH A 140 540 79 HOH HOH . D 4 HOH A 141 541 80 HOH HOH . D 4 HOH A 142 542 81 HOH HOH . D 4 HOH A 143 543 82 HOH HOH . D 4 HOH A 144 544 86 HOH HOH . D 4 HOH A 145 545 87 HOH HOH . D 4 HOH A 146 546 92 HOH HOH . D 4 HOH A 147 547 93 HOH HOH . D 4 HOH A 148 548 95 HOH HOH . D 4 HOH A 149 549 96 HOH HOH . D 4 HOH A 150 550 98 HOH HOH . D 4 HOH A 151 551 99 HOH HOH . D 4 HOH A 152 552 102 HOH HOH . D 4 HOH A 153 553 104 HOH HOH . D 4 HOH A 154 554 107 HOH HOH . D 4 HOH A 155 555 112 HOH HOH . D 4 HOH A 156 556 116 HOH HOH . D 4 HOH A 157 557 122 HOH HOH . D 4 HOH A 158 558 124 HOH HOH . D 4 HOH A 159 559 131 HOH HOH . D 4 HOH A 160 560 132 HOH HOH . D 4 HOH A 161 561 136 HOH HOH . D 4 HOH A 162 562 137 HOH HOH . D 4 HOH A 163 563 138 HOH HOH . D 4 HOH A 164 564 139 HOH HOH . D 4 HOH A 165 565 152 HOH HOH . D 4 HOH A 166 566 153 HOH HOH . D 4 HOH A 167 567 155 HOH HOH . D 4 HOH A 168 568 157 HOH HOH . D 4 HOH A 169 569 158 HOH HOH . D 4 HOH A 170 570 165 HOH HOH . D 4 HOH A 171 571 166 HOH HOH . D 4 HOH A 172 572 168 HOH HOH . D 4 HOH A 173 573 179 HOH HOH . D 4 HOH A 174 574 207 HOH HOH . D 4 HOH A 175 575 209 HOH HOH . D 4 HOH A 176 576 211 HOH HOH . D 4 HOH A 177 577 215 HOH HOH . D 4 HOH A 178 578 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 24.8 2.418 -6.011 1 13.01 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . B 2 25.243 3.448 -6.896 1 13.99 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . B 2 23.856 1.492 -6.771 1 12.22 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . B 2 22.667 2.194 -7.153 1 10.45 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #