data_4PCI # _model_server_result.job_id ydZ7Ul_bpZDH8J-11-CUeQ _model_server_result.datetime_utc '2024-10-19 00:45:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4PCI # _exptl.entry_id 4PCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-1-methyl-4-phenyl-1,3,4,5-tetrahydro-2H-1,5-benzodiazepin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PCI _cell.length_a 37.411 _cell.length_b 44.392 _cell.length_c 78.246 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 N2 O' _chem_comp.formula_weight 252.311 _chem_comp.id 2NJ _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-1-methyl-4-phenyl-1,3,4,5-tetrahydro-2H-1,5-benzodiazepin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N 2NJ sing 1 n n C2 C3 2NJ doub 2 n y C2 C1 2NJ sing 3 n y C3 C4 2NJ sing 4 n y N C1 2NJ sing 5 n n N C9 2NJ sing 6 n n C1 C6 2NJ doub 7 n y O C9 2NJ doub 8 n n C9 C8 2NJ sing 9 n n C4 C5 2NJ doub 10 n y C8 C7 2NJ sing 11 n n C6 C5 2NJ sing 12 n y C6 N1 2NJ sing 13 n n N1 C7 2NJ sing 14 n n C7 C10 2NJ sing 15 n n C15 C10 2NJ doub 16 n y C15 C14 2NJ sing 17 n y C10 C11 2NJ sing 18 n y C14 C13 2NJ doub 19 n y C11 C12 2NJ doub 20 n y C13 C12 2NJ sing 21 n y C H1 2NJ sing 22 n n C H2 2NJ sing 23 n n C H3 2NJ sing 24 n n C8 H4 2NJ sing 25 n n C8 H5 2NJ sing 26 n n C7 H6 2NJ sing 27 n n C15 H7 2NJ sing 28 n n C14 H8 2NJ sing 29 n n C13 H9 2NJ sing 30 n n C12 H10 2NJ sing 31 n n C11 H11 2NJ sing 32 n n N1 H12 2NJ sing 33 n n C5 H13 2NJ sing 34 n n C4 H14 2NJ sing 35 n n C3 H15 2NJ sing 36 n n C2 H16 2NJ sing 37 n n # _atom_sites.entry_id 4PCI _atom_sites.fract_transf_matrix[1][1] 0.02673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2NJ A 1 201 1 2NJ 2NJ . C 3 EDO A 1 202 2 EDO EDO . D 4 HOH A 1 301 143 HOH HOH . D 4 HOH A 2 302 158 HOH HOH . D 4 HOH A 3 303 80 HOH HOH . D 4 HOH A 4 304 2 HOH HOH . D 4 HOH A 5 305 108 HOH HOH . D 4 HOH A 6 306 40 HOH HOH . D 4 HOH A 7 307 30 HOH HOH . D 4 HOH A 8 308 70 HOH HOH . D 4 HOH A 9 309 34 HOH HOH . D 4 HOH A 10 310 45 HOH HOH . D 4 HOH A 11 311 14 HOH HOH . D 4 HOH A 12 312 17 HOH HOH . D 4 HOH A 13 313 53 HOH HOH . D 4 HOH A 14 314 41 HOH HOH . D 4 HOH A 15 315 32 HOH HOH . D 4 HOH A 16 316 62 HOH HOH . D 4 HOH A 17 317 88 HOH HOH . D 4 HOH A 18 318 28 HOH HOH . D 4 HOH A 19 319 144 HOH HOH . D 4 HOH A 20 320 91 HOH HOH . D 4 HOH A 21 321 56 HOH HOH . D 4 HOH A 22 322 58 HOH HOH . D 4 HOH A 23 323 99 HOH HOH . D 4 HOH A 24 324 33 HOH HOH . D 4 HOH A 25 325 135 HOH HOH . D 4 HOH A 26 326 156 HOH HOH . D 4 HOH A 27 327 25 HOH HOH . D 4 HOH A 28 328 13 HOH HOH . D 4 HOH A 29 329 86 HOH HOH . D 4 HOH A 30 330 150 HOH HOH . D 4 HOH A 31 331 89 HOH HOH . D 4 HOH A 32 332 63 HOH HOH . D 4 HOH A 33 333 90 HOH HOH . D 4 HOH A 34 334 110 HOH HOH . D 4 HOH A 35 335 111 HOH HOH . D 4 HOH A 36 336 55 HOH HOH . D 4 HOH A 37 337 61 HOH HOH . D 4 HOH A 38 338 109 HOH HOH . D 4 HOH A 39 339 3 HOH HOH . D 4 HOH A 40 340 84 HOH HOH . D 4 HOH A 41 341 118 HOH HOH . D 4 HOH A 42 342 134 HOH HOH . D 4 HOH A 43 343 23 HOH HOH . D 4 HOH A 44 344 78 HOH HOH . D 4 HOH A 45 345 159 HOH HOH . D 4 HOH A 46 346 38 HOH HOH . D 4 HOH A 47 347 103 HOH HOH . D 4 HOH A 48 348 147 HOH HOH . D 4 HOH A 49 349 128 HOH HOH . D 4 HOH A 50 350 161 HOH HOH . D 4 HOH A 51 351 145 HOH HOH . D 4 HOH A 52 352 107 HOH HOH . D 4 HOH A 53 353 79 HOH HOH . D 4 HOH A 54 354 77 HOH HOH . D 4 HOH A 55 355 155 HOH HOH . D 4 HOH A 56 356 49 HOH HOH . D 4 HOH A 57 357 151 HOH HOH . D 4 HOH A 58 358 96 HOH HOH . D 4 HOH A 59 359 51 HOH HOH . D 4 HOH A 60 360 152 HOH HOH . D 4 HOH A 61 361 133 HOH HOH . D 4 HOH A 62 362 65 HOH HOH . D 4 HOH A 63 363 52 HOH HOH . D 4 HOH A 64 364 124 HOH HOH . D 4 HOH A 65 365 157 HOH HOH . D 4 HOH A 66 366 125 HOH HOH . D 4 HOH A 67 367 24 HOH HOH . D 4 HOH A 68 368 87 HOH HOH . D 4 HOH A 69 369 146 HOH HOH . D 4 HOH A 70 370 57 HOH HOH . D 4 HOH A 71 371 113 HOH HOH . D 4 HOH A 72 372 1 HOH HOH . D 4 HOH A 73 373 4 HOH HOH . D 4 HOH A 74 374 5 HOH HOH . D 4 HOH A 75 375 6 HOH HOH . D 4 HOH A 76 376 7 HOH HOH . D 4 HOH A 77 377 8 HOH HOH . D 4 HOH A 78 378 9 HOH HOH . D 4 HOH A 79 379 10 HOH HOH . D 4 HOH A 80 380 11 HOH HOH . D 4 HOH A 81 381 12 HOH HOH . D 4 HOH A 82 382 15 HOH HOH . D 4 HOH A 83 383 16 HOH HOH . D 4 HOH A 84 384 18 HOH HOH . D 4 HOH A 85 385 19 HOH HOH . D 4 HOH A 86 386 20 HOH HOH . D 4 HOH A 87 387 21 HOH HOH . D 4 HOH A 88 388 22 HOH HOH . D 4 HOH A 89 389 26 HOH HOH . D 4 HOH A 90 390 27 HOH HOH . D 4 HOH A 91 391 29 HOH HOH . D 4 HOH A 92 392 31 HOH HOH . D 4 HOH A 93 393 35 HOH HOH . D 4 HOH A 94 394 36 HOH HOH . D 4 HOH A 95 395 37 HOH HOH . D 4 HOH A 96 396 39 HOH HOH . D 4 HOH A 97 397 42 HOH HOH . D 4 HOH A 98 398 43 HOH HOH . D 4 HOH A 99 399 44 HOH HOH . D 4 HOH A 100 400 46 HOH HOH . D 4 HOH A 101 401 47 HOH HOH . D 4 HOH A 102 402 48 HOH HOH . D 4 HOH A 103 403 50 HOH HOH . D 4 HOH A 104 404 54 HOH HOH . D 4 HOH A 105 405 59 HOH HOH . D 4 HOH A 106 406 60 HOH HOH . D 4 HOH A 107 407 64 HOH HOH . D 4 HOH A 108 408 66 HOH HOH . D 4 HOH A 109 409 67 HOH HOH . D 4 HOH A 110 410 68 HOH HOH . D 4 HOH A 111 411 69 HOH HOH . D 4 HOH A 112 412 71 HOH HOH . D 4 HOH A 113 413 72 HOH HOH . D 4 HOH A 114 414 73 HOH HOH . D 4 HOH A 115 415 74 HOH HOH . D 4 HOH A 116 416 75 HOH HOH . D 4 HOH A 117 417 76 HOH HOH . D 4 HOH A 118 418 81 HOH HOH . D 4 HOH A 119 419 82 HOH HOH . D 4 HOH A 120 420 83 HOH HOH . D 4 HOH A 121 421 85 HOH HOH . D 4 HOH A 122 422 92 HOH HOH . D 4 HOH A 123 423 93 HOH HOH . D 4 HOH A 124 424 94 HOH HOH . D 4 HOH A 125 425 95 HOH HOH . D 4 HOH A 126 426 98 HOH HOH . D 4 HOH A 127 427 100 HOH HOH . D 4 HOH A 128 428 101 HOH HOH . D 4 HOH A 129 429 102 HOH HOH . D 4 HOH A 130 430 104 HOH HOH . D 4 HOH A 131 431 105 HOH HOH . D 4 HOH A 132 432 106 HOH HOH . D 4 HOH A 133 433 112 HOH HOH . D 4 HOH A 134 434 117 HOH HOH . D 4 HOH A 135 435 119 HOH HOH . D 4 HOH A 136 436 122 HOH HOH . D 4 HOH A 137 437 123 HOH HOH . D 4 HOH A 138 438 126 HOH HOH . D 4 HOH A 139 439 132 HOH HOH . D 4 HOH A 140 440 142 HOH HOH . D 4 HOH A 141 441 148 HOH HOH . D 4 HOH A 142 442 149 HOH HOH . D 4 HOH A 143 443 153 HOH HOH . D 4 HOH A 144 444 154 HOH HOH . D 4 HOH A 145 445 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 2NJ . . . B 2 14.769 4.614 0.096 1 9.15 ? O 2NJ 201 A 1 HETATM 2 C C9 2NJ . . . B 2 13.769 5.322 0.201 1 8.46 ? C9 2NJ 201 A 1 HETATM 3 N N 2NJ . . . B 2 12.6 4.948 -0.304 1 7.92 ? N 2NJ 201 A 1 HETATM 4 C C 2NJ . . . B 2 12.473 3.717 -1.085 1 9.34 ? C 2NJ 201 A 1 HETATM 5 C C8 2NJ . . . B 2 13.806 6.644 0.932 1 9.45 ? C8 2NJ 201 A 1 HETATM 6 C C7 2NJ . . . B 2 13.271 6.462 2.353 1 9.61 ? C7 2NJ 201 A 1 HETATM 7 C C10 2NJ . . . B 2 13.321 7.772 3.074 1 10.57 ? C10 2NJ 201 A 1 HETATM 8 C C15 2NJ . . . B 2 12.352 8.763 2.891 1 11.34 ? C15 2NJ 201 A 1 HETATM 9 C C14 2NJ . . . B 2 12.434 9.98 3.574 1 12.83 ? C14 2NJ 201 A 1 HETATM 10 C C13 2NJ . . . B 2 13.491 10.201 4.447 1 14.23 ? C13 2NJ 201 A 1 HETATM 11 C C12 2NJ . . . B 2 14.468 9.227 4.625 1 15.19 ? C12 2NJ 201 A 1 HETATM 12 C C11 2NJ . . . B 2 14.383 8.021 3.936 1 13.42 ? C11 2NJ 201 A 1 HETATM 13 N N1 2NJ . . . B 2 11.934 5.875 2.309 1 9.18 ? N1 2NJ 201 A 1 HETATM 14 C C6 2NJ . . . B 2 11.083 6.059 1.255 1 9 ? C6 2NJ 201 A 1 HETATM 15 C C1 2NJ . . . B 2 11.401 5.64 -0.034 1 8.48 ? C1 2NJ 201 A 1 HETATM 16 C C5 2NJ . . . B 2 9.857 6.683 1.474 1 9.99 ? C5 2NJ 201 A 1 HETATM 17 C C4 2NJ . . . B 2 8.949 6.877 0.435 1 10.25 ? C4 2NJ 201 A 1 HETATM 18 C C3 2NJ . . . B 2 9.27 6.46 -0.848 1 9.66 ? C3 2NJ 201 A 1 HETATM 19 C C2 2NJ . . . B 2 10.494 5.842 -1.077 1 8.96 ? C2 2NJ 201 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #