data_4PCR # _model_server_result.job_id YCHOIjNp23w3tV_qhycKFw _model_server_result.datetime_utc '2025-01-10 22:27:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 4PCR # _exptl.entry_id 4PCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.47 _cell.angle_gamma 90 _cell.entry_id 4PCR _cell.length_a 120.41 _cell.length_b 72.13 _cell.length_c 68.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PCR _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -38.707006 0 56.382265 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc8 A OD1 ASP 19 A ASP 19 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 C CA CA . A CA 301 1_555 Q O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc11 C CA CA . A CA 301 1_555 Q O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc12 D MN MN . A MN 302 1_555 Q O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc13 D MN MN . A MN 302 1_555 Q O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc14 B OE2 GLU 8 D GLU 8 1_555 J MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc15 B OD1 ASP 10 D ASP 10 1_555 I CA CA . D CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc16 B OD2 ASP 10 D ASP 10 1_555 I CA CA . D CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc17 B OD2 ASP 10 D ASP 10 1_555 J MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc18 B O TYR 12 D TYR 12 1_555 I CA CA . D CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc19 B OD1 ASN 14 D ASN 14 1_555 I CA CA . D CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc20 B OD2 ASP 19 D ASP 19 1_555 I CA CA . D CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc21 B OD1 ASP 19 D ASP 19 1_555 J MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc22 B NE2 HIS 24 D HIS 24 1_555 J MN MN . D MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc23 I CA CA . D CA 301 1_555 R O HOH . D HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc24 I CA CA . D CA 301 1_555 R O HOH . D HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc25 J MN MN . D MN 302 1_555 R O HOH . D HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc26 J MN MN . D MN 302 1_555 R O HOH . D HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PCR _atom_sites.fract_transf_matrix[1][1] 0.008305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005701 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 238 CA CA . D 3 MN A 1 302 239 MN MN . E 4 IPA A 1 303 240 IPA IPA . F 5 ABU A 1 304 241 ABU ABU . G 5 ABU A 1 305 242 ABU ABU . H 6 PEG A 1 306 246 PEG PEG . I 2 CA D 1 301 238 CA CA . J 3 MN D 1 302 239 MN MN . K 4 IPA D 1 303 240 IPA IPA . L 5 ABU D 1 304 241 ABU ABU . M 7 EDO D 1 305 242 EDO EDO . N 7 EDO D 1 306 243 EDO EDO . O 6 PEG D 1 307 244 PEG PEG . P 6 PEG D 1 308 245 PEG PEG . Q 8 HOH A 1 401 33 HOH HOH . Q 8 HOH A 2 402 43 HOH HOH . Q 8 HOH A 3 403 74 HOH HOH . Q 8 HOH A 4 404 73 HOH HOH . Q 8 HOH A 5 405 34 HOH HOH . Q 8 HOH A 6 406 46 HOH HOH . Q 8 HOH A 7 407 27 HOH HOH . Q 8 HOH A 8 408 90 HOH HOH . Q 8 HOH A 9 409 3 HOH HOH . Q 8 HOH A 10 410 4 HOH HOH . Q 8 HOH A 11 411 5 HOH HOH . Q 8 HOH A 12 412 9 HOH HOH . Q 8 HOH A 13 413 10 HOH HOH . Q 8 HOH A 14 414 11 HOH HOH . Q 8 HOH A 15 415 12 HOH HOH . Q 8 HOH A 16 416 15 HOH HOH . Q 8 HOH A 17 417 16 HOH HOH . Q 8 HOH A 18 418 17 HOH HOH . Q 8 HOH A 19 419 18 HOH HOH . Q 8 HOH A 20 420 19 HOH HOH . Q 8 HOH A 21 421 20 HOH HOH . Q 8 HOH A 22 422 21 HOH HOH . Q 8 HOH A 23 423 23 HOH HOH . Q 8 HOH A 24 424 29 HOH HOH . Q 8 HOH A 25 425 35 HOH HOH . Q 8 HOH A 26 426 37 HOH HOH . Q 8 HOH A 27 427 39 HOH HOH . Q 8 HOH A 28 428 41 HOH HOH . Q 8 HOH A 29 429 44 HOH HOH . Q 8 HOH A 30 430 47 HOH HOH . Q 8 HOH A 31 431 48 HOH HOH . Q 8 HOH A 32 432 57 HOH HOH . Q 8 HOH A 33 433 59 HOH HOH . Q 8 HOH A 34 434 60 HOH HOH . Q 8 HOH A 35 435 65 HOH HOH . Q 8 HOH A 36 436 69 HOH HOH . Q 8 HOH A 37 437 70 HOH HOH . Q 8 HOH A 38 438 72 HOH HOH . Q 8 HOH A 39 439 75 HOH HOH . Q 8 HOH A 40 440 76 HOH HOH . Q 8 HOH A 41 441 81 HOH HOH . Q 8 HOH A 42 442 83 HOH HOH . Q 8 HOH A 43 443 89 HOH HOH . Q 8 HOH A 44 444 91 HOH HOH . Q 8 HOH A 45 445 92 HOH HOH . Q 8 HOH A 46 446 94 HOH HOH . R 8 HOH D 1 401 61 HOH HOH . R 8 HOH D 2 402 88 HOH HOH . R 8 HOH D 3 403 50 HOH HOH . R 8 HOH D 4 404 78 HOH HOH . R 8 HOH D 5 405 64 HOH HOH . R 8 HOH D 6 406 86 HOH HOH . R 8 HOH D 7 407 80 HOH HOH . R 8 HOH D 8 408 13 HOH HOH . R 8 HOH D 9 409 68 HOH HOH . R 8 HOH D 10 410 30 HOH HOH . R 8 HOH D 11 411 71 HOH HOH . R 8 HOH D 12 412 56 HOH HOH . R 8 HOH D 13 413 53 HOH HOH . R 8 HOH D 14 414 95 HOH HOH . R 8 HOH D 15 415 51 HOH HOH . R 8 HOH D 16 416 1 HOH HOH . R 8 HOH D 17 417 2 HOH HOH . R 8 HOH D 18 418 6 HOH HOH . R 8 HOH D 19 419 7 HOH HOH . R 8 HOH D 20 420 8 HOH HOH . R 8 HOH D 21 421 14 HOH HOH . R 8 HOH D 22 422 22 HOH HOH . R 8 HOH D 23 423 24 HOH HOH . R 8 HOH D 24 424 25 HOH HOH . R 8 HOH D 25 425 26 HOH HOH . R 8 HOH D 26 426 28 HOH HOH . R 8 HOH D 27 427 31 HOH HOH . R 8 HOH D 28 428 32 HOH HOH . R 8 HOH D 29 429 36 HOH HOH . R 8 HOH D 30 430 38 HOH HOH . R 8 HOH D 31 431 40 HOH HOH . R 8 HOH D 32 432 42 HOH HOH . R 8 HOH D 33 433 45 HOH HOH . R 8 HOH D 34 434 49 HOH HOH . R 8 HOH D 35 435 52 HOH HOH . R 8 HOH D 36 436 54 HOH HOH . R 8 HOH D 37 437 55 HOH HOH . R 8 HOH D 38 438 58 HOH HOH . R 8 HOH D 39 439 62 HOH HOH . R 8 HOH D 40 440 63 HOH HOH . R 8 HOH D 41 441 66 HOH HOH . R 8 HOH D 42 442 67 HOH HOH . R 8 HOH D 43 443 77 HOH HOH . R 8 HOH D 44 444 79 HOH HOH . R 8 HOH D 45 445 82 HOH HOH . R 8 HOH D 46 446 84 HOH HOH . R 8 HOH D 47 447 85 HOH HOH . R 8 HOH D 48 448 87 HOH HOH . R 8 HOH D 49 449 93 HOH HOH . R 8 HOH D 50 450 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x -23.773 _atom_site.Cartn_y -40.298 _atom_site.Cartn_z 6.607 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #