data_4PCU # _model_server_result.job_id Se4kqkre66Yac4iuAXikqA _model_server_result.datetime_utc '2024-11-29 16:09:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4PCU # _exptl.entry_id 4PCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PCU _cell.length_a 141.354 _cell.length_b 141.354 _cell.length_c 108.528 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 119 A LYS 119 1_555 D C4A PLP . A PLP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A NE2 HIS 65 A HIS 65 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 B SG CYS 52 B CYS 52 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 B NE2 HIS 65 B HIS 65 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4PCU _atom_sites.fract_transf_matrix[1][1] 0.007074 _atom_sites.fract_transf_matrix[1][2] 0.004084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 1000 HEM HEM . D 3 PLP A 1 602 2000 PLP PLP . E 4 SAM A 1 603 3000 SAM SAM . F 2 HEM B 1 601 1000 HEM HEM . G 3 PLP B 1 602 2000 PLP PLP . H 4 SAM B 1 603 3000 SAM SAM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -68.388 26.509 30.95 1 92.26 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . C 2 -72.888 28.216 31.19 1 93.62 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . C 2 -73.256 27.899 26.349 1 87.5 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . C 2 -68.752 26.194 26.117 1 86.18 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . C 2 -69.582 26.972 31.434 1 93.08 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . C 2 -69.928 27.139 32.831 1 95.16 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . C 2 -71.168 27.61 32.884 1 95.52 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . C 2 -71.649 27.756 31.535 1 93.69 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . C 2 -71.967 27.95 34.156 1 97.69 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . C 2 -69.044 26.83 34.055 1 96.87 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . C 2 -67.81 27.717 34.096 1 96.44 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . C 2 -66.84 27.077 35.051 1 97.99 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . C 2 -67.281 26.239 35.884 1 99.64 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . C 2 -65.628 27.407 34.971 1 97.67 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . C 2 -73.385 28.265 29.904 1 92.05 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . C 2 -74.704 28.735 29.532 1 92.16 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . C 2 -74.811 28.654 28.193 1 90.47 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . C 2 -73.556 28.128 27.681 1 89.24 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . C 2 -75.744 29.23 30.565 1 94.12 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . C 2 -76.006 29.024 27.272 1 89.97 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . C 2 -77.196 29.471 27.695 1 91.24 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . C 2 -72.062 27.424 25.866 1 86.51 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . C 2 -71.75 27.218 24.469 1 84.84 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . C 2 -70.496 26.742 24.402 1 84.47 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . C 2 -69.999 26.635 25.757 1 85.91 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . C 2 -72.753 27.532 23.337 1 83.93 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . C 2 -69.644 26.343 23.176 1 83.03 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . C 2 -70.098 26.329 21.922 1 81.86 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . C 2 -68.286 26.1 27.396 1 87.68 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . C 2 -67 25.542 27.713 1 88.09 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . C 2 -66.892 25.637 29.218 1 89.98 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . C 2 -68.113 26.251 29.645 1 90.5 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . C 2 -65.958 24.951 26.748 1 87.05 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . C 2 -65.704 25.188 30.077 1 91.24 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . C 2 -66.056 23.949 30.884 1 92.84 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . C 2 -64.823 23.558 31.656 1 94.1 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . C 2 -63.858 24.366 31.688 1 93.88 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . C 2 -64.799 22.446 32.241 1 95.44 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . C 2 -70.659 27.358 30.662 1 92.2 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . C 2 -72.715 27.893 28.754 1 90.28 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . C 2 -70.979 27.047 26.633 1 87.14 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . C 2 -68.925 26.522 28.554 1 89.13 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . C 2 -70.817 27.205 28.649 1 89.58 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #