data_4PCU # _model_server_result.job_id B-KYH3Ix21rjrzxXrWLmYg _model_server_result.datetime_utc '2024-11-29 16:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 4PCU # _exptl.entry_id 4PCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PCU _cell.length_a 141.354 _cell.length_b 141.354 _cell.length_c 108.528 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 119 A LYS 119 1_555 D C4A PLP . A PLP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A NE2 HIS 65 A HIS 65 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 B SG CYS 52 B CYS 52 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 B NE2 HIS 65 B HIS 65 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 383 n n N HN1 SAM sing 384 n n N HN2 SAM sing 385 n n CA C SAM sing 386 n n CA CB SAM sing 387 n n CA HA SAM sing 388 n n C O SAM doub 389 n n C OXT SAM sing 390 n n CB CG SAM sing 391 n n CB HB1 SAM sing 392 n n CB HB2 SAM sing 393 n n CG SD SAM sing 394 n n CG HG1 SAM sing 395 n n CG HG2 SAM sing 396 n n SD CE SAM sing 397 n n SD C5' SAM sing 398 n n CE HE1 SAM sing 399 n n CE HE2 SAM sing 400 n n CE HE3 SAM sing 401 n n C5' C4' SAM sing 402 n n C5' "H5'1" SAM sing 403 n n C5' "H5'2" SAM sing 404 n n C4' O4' SAM sing 405 n n C4' C3' SAM sing 406 n n C4' H4' SAM sing 407 n n O4' C1' SAM sing 408 n n C3' O3' SAM sing 409 n n C3' C2' SAM sing 410 n n C3' H3' SAM sing 411 n n O3' HO3' SAM sing 412 n n C2' O2' SAM sing 413 n n C2' C1' SAM sing 414 n n C2' H2' SAM sing 415 n n O2' HO2' SAM sing 416 n n C1' N9 SAM sing 417 n n C1' H1' SAM sing 418 n n N9 C8 SAM sing 419 n y N9 C4 SAM sing 420 n y C8 N7 SAM doub 421 n y C8 H8 SAM sing 422 n n N7 C5 SAM sing 423 n y C5 C6 SAM sing 424 n y C5 C4 SAM doub 425 n y C6 N6 SAM sing 426 n n C6 N1 SAM doub 427 n y N6 HN61 SAM sing 428 n n N6 HN62 SAM sing 429 n n N1 C2 SAM sing 430 n y C2 N3 SAM doub 431 n y C2 H2 SAM sing 432 n n N3 C4 SAM sing 433 n y # _atom_sites.entry_id 4PCU _atom_sites.fract_transf_matrix[1][1] 0.007074 _atom_sites.fract_transf_matrix[1][2] 0.004084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 1000 HEM HEM . D 3 PLP A 1 602 2000 PLP PLP . E 4 SAM A 1 603 3000 SAM SAM . F 2 HEM B 1 601 1000 HEM HEM . G 3 PLP B 1 602 2000 PLP PLP . H 4 SAM B 1 603 3000 SAM SAM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . E 4 -28.617 -1.01 7.949 1 173.01 ? N SAM 603 A 1 HETATM 2 C CA SAM . . . E 4 -28.305 -2.426 8.322 1 171.16 ? CA SAM 603 A 1 HETATM 3 C C SAM . . . E 4 -29.137 -2.892 9.506 1 170.54 ? C SAM 603 A 1 HETATM 4 O O SAM . . . E 4 -29.307 -2.126 10.45 1 174.3 ? O SAM 603 A 1 HETATM 5 O OXT SAM . . . E 4 -29.762 -4.023 9.37 1 174.93 ? OXT SAM 603 A 1 HETATM 6 C CB SAM . . . E 4 -26.837 -2.622 8.656 1 175.91 ? CB SAM 603 A 1 HETATM 7 C CG SAM . . . E 4 -26.235 -4.008 8.554 1 178.97 ? CG SAM 603 A 1 HETATM 8 S SD SAM . . . E 4 -26.869 -5.228 9.623 1 180.45 ? SD SAM 603 A 1 HETATM 9 C CE SAM . . . E 4 -25.636 -6.286 9.861 1 184.16 ? CE SAM 603 A 1 HETATM 10 C C5' SAM . . . E 4 -27.945 -6.053 8.522 1 179.25 ? C5' SAM 603 A 1 HETATM 11 C C4' SAM . . . E 4 -28.358 -7.426 9.087 1 179.98 ? C4' SAM 603 A 1 HETATM 12 O O4' SAM . . . E 4 -28.613 -7.339 10.488 1 180.29 ? O4' SAM 603 A 1 HETATM 13 C C3' SAM . . . E 4 -29.717 -7.891 8.543 1 176.42 ? C3' SAM 603 A 1 HETATM 14 O O3' SAM . . . E 4 -29.756 -9.317 8.414 1 181.29 ? O3' SAM 603 A 1 HETATM 15 C C2' SAM . . . E 4 -30.679 -7.369 9.527 1 173.75 ? C2' SAM 603 A 1 HETATM 16 O O2' SAM . . . E 4 -31.984 -7.992 9.559 1 173.52 ? O2' SAM 603 A 1 HETATM 17 C C1' SAM . . . E 4 -29.972 -7.604 10.837 1 175.57 ? C1' SAM 603 A 1 HETATM 18 N N9 SAM . . . E 4 -30.46 -6.804 11.924 1 175.63 ? N9 SAM 603 A 1 HETATM 19 C C8 SAM . . . E 4 -30.599 -5.47 11.983 1 172.18 ? C8 SAM 603 A 1 HETATM 20 N N7 SAM . . . E 4 -30.995 -5.108 13.221 1 172.12 ? N7 SAM 603 A 1 HETATM 21 C C5 SAM . . . E 4 -31.126 -6.247 13.937 1 173.63 ? C5 SAM 603 A 1 HETATM 22 C C6 SAM . . . E 4 -31.375 -6.555 15.352 1 175.78 ? C6 SAM 603 A 1 HETATM 23 N N6 SAM . . . E 4 -31.721 -5.575 16.131 1 173.91 ? N6 SAM 603 A 1 HETATM 24 N N1 SAM . . . E 4 -31.441 -7.883 15.707 1 176.06 ? N1 SAM 603 A 1 HETATM 25 C C2 SAM . . . E 4 -31.079 -8.875 14.888 1 178.61 ? C2 SAM 603 A 1 HETATM 26 N N3 SAM . . . E 4 -30.766 -8.646 13.571 1 178.16 ? N3 SAM 603 A 1 HETATM 27 C C4 SAM . . . E 4 -30.771 -7.335 13.132 1 173.94 ? C4 SAM 603 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #