data_4PCU
#
_model_server_result.job_id            GpmcKZA27hrUTsBx_arOfA 
_model_server_result.datetime_utc      '2024-11-29 16:08:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pcu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":603}' 
#
_entry.id    4PCU 
#
_exptl.entry_id    4PCU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4PCU 
_cell.length_a            141.354 
_cell.length_b            141.354 
_cell.length_c            108.528 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PCU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 119 A LYS 119 1_555 D C4A PLP . A PLP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? 
metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc2 A NE2 HIS 65 A HIS 65 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc3 B SG CYS 52 B CYS 52 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc4 B NE2 HIS 65 B HIS 65 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 383 n n 
N HN1 SAM sing 384 n n 
N HN2 SAM sing 385 n n 
CA C SAM sing 386 n n 
CA CB SAM sing 387 n n 
CA HA SAM sing 388 n n 
C O SAM doub 389 n n 
C OXT SAM sing 390 n n 
CB CG SAM sing 391 n n 
CB HB1 SAM sing 392 n n 
CB HB2 SAM sing 393 n n 
CG SD SAM sing 394 n n 
CG HG1 SAM sing 395 n n 
CG HG2 SAM sing 396 n n 
SD CE SAM sing 397 n n 
SD C5' SAM sing 398 n n 
CE HE1 SAM sing 399 n n 
CE HE2 SAM sing 400 n n 
CE HE3 SAM sing 401 n n 
C5' C4' SAM sing 402 n n 
C5' "H5'1" SAM sing 403 n n 
C5' "H5'2" SAM sing 404 n n 
C4' O4' SAM sing 405 n n 
C4' C3' SAM sing 406 n n 
C4' H4' SAM sing 407 n n 
O4' C1' SAM sing 408 n n 
C3' O3' SAM sing 409 n n 
C3' C2' SAM sing 410 n n 
C3' H3' SAM sing 411 n n 
O3' HO3' SAM sing 412 n n 
C2' O2' SAM sing 413 n n 
C2' C1' SAM sing 414 n n 
C2' H2' SAM sing 415 n n 
O2' HO2' SAM sing 416 n n 
C1' N9 SAM sing 417 n n 
C1' H1' SAM sing 418 n n 
N9 C8 SAM sing 419 n y 
N9 C4 SAM sing 420 n y 
C8 N7 SAM doub 421 n y 
C8 H8 SAM sing 422 n n 
N7 C5 SAM sing 423 n y 
C5 C6 SAM sing 424 n y 
C5 C4 SAM doub 425 n y 
C6 N6 SAM sing 426 n n 
C6 N1 SAM doub 427 n y 
N6 HN61 SAM sing 428 n n 
N6 HN62 SAM sing 429 n n 
N1 C2 SAM sing 430 n y 
C2 N3 SAM doub 431 n y 
C2 H2 SAM sing 432 n n 
N3 C4 SAM sing 433 n y 
#
_atom_sites.entry_id                     4PCU 
_atom_sites.fract_transf_matrix[1][1]    0.007074 
_atom_sites.fract_transf_matrix[1][2]    0.004084 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008169 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009214 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 1000 HEM HEM . 
D 3 PLP A 1 602 2000 PLP PLP . 
E 4 SAM A 1 603 3000 SAM SAM . 
F 2 HEM B 1 601 1000 HEM HEM . 
G 3 PLP B 1 602 2000 PLP PLP . 
H 4 SAM B 1 603 3000 SAM SAM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . H 4 -25.488 1.573 8.103 1 184.28 ? N SAM 603 B 1 
HETATM 2 C CA SAM . . . H 4 -24.182 1.129 8.583 1 188.08 ? CA SAM 603 B 1 
HETATM 3 C C SAM . . . H 4 -23.141 1.315 7.479 1 194.75 ? C SAM 603 B 1 
HETATM 4 O O SAM . . . H 4 -22.018 1.802 7.753 1 197.36 ? O SAM 603 B 1 
HETATM 5 O OXT SAM . . . H 4 -23.372 0.951 6.294 1 192.5 ? OXT SAM 603 B 1 
HETATM 6 C CB SAM . . . H 4 -24.246 -0.369 8.979 1 189.07 ? CB SAM 603 B 1 
HETATM 7 C CG SAM . . . H 4 -23.071 -0.926 9.814 1 192.95 ? CG SAM 603 B 1 
HETATM 8 S SD SAM . . . H 4 -21.487 -0.871 9.259 1 199.29 ? SD SAM 603 B 1 
HETATM 9 C CE SAM . . . H 4 -20.786 -2.217 10.081 1 203.89 ? CE SAM 603 B 1 
HETATM 10 C C5' SAM . . . H 4 -20.942 0.545 10.138 1 197.56 ? C5' SAM 603 B 1 
HETATM 11 C C4' SAM . . . H 4 -19.42 0.638 10.101 1 202.53 ? C4' SAM 603 B 1 
HETATM 12 O O4' SAM . . . H 4 -18.859 0.227 8.839 1 203.16 ? O4' SAM 603 B 1 
HETATM 13 C C3' SAM . . . H 4 -18.973 2.121 10.285 1 197.8 ? C3' SAM 603 B 1 
HETATM 14 O O3' SAM . . . H 4 -17.716 2.219 11.024 1 205.74 ? O3' SAM 603 B 1 
HETATM 15 C C2' SAM . . . H 4 -18.674 2.53 8.843 1 200.46 ? C2' SAM 603 B 1 
HETATM 16 O O2' SAM . . . H 4 -17.829 3.692 8.648 1 200.58 ? O2' SAM 603 B 1 
HETATM 17 C C1' SAM . . . H 4 -18.107 1.296 8.227 1 204.26 ? C1' SAM 603 B 1 
HETATM 18 N N9 SAM . . . H 4 -18.285 1.227 6.753 1 202.62 ? N9 SAM 603 B 1 
HETATM 19 C C8 SAM . . . H 4 -19.452 1.383 6.095 1 200.52 ? C8 SAM 603 B 1 
HETATM 20 N N7 SAM . . . H 4 -19.225 1.229 4.79 1 200.52 ? N7 SAM 603 B 1 
HETATM 21 C C5 SAM . . . H 4 -17.93 0.805 4.646 1 203.9 ? C5 SAM 603 B 1 
HETATM 22 C C6 SAM . . . H 4 -17.055 0.473 3.578 1 210.41 ? C6 SAM 603 B 1 
HETATM 23 N N6 SAM . . . H 4 -17.498 0.383 2.29 1 206.3 ? N6 SAM 603 B 1 
HETATM 24 N N1 SAM . . . H 4 -15.748 0.207 3.841 1 217.32 ? N1 SAM 603 B 1 
HETATM 25 C C2 SAM . . . H 4 -15.253 0.227 5.083 1 218.29 ? C2 SAM 603 B 1 
HETATM 26 N N3 SAM . . . H 4 -16.009 0.551 6.106 1 208.92 ? N3 SAM 603 B 1 
HETATM 27 C C4 SAM . . . H 4 -17.325 0.842 5.963 1 207.07 ? C4 SAM 603 B 1 
#
_model_server_stats.io_time_ms              87 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          24 
_model_server_stats.element_count           27 
#