data_4PD4 # _model_server_result.job_id o-y6Ka5x0zOtyZJUGHo_Uw _model_server_result.datetime_utc '2025-02-28 13:41:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 4PD4 # _exptl.entry_id 4PD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.589 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECYL-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.18 _cell.angle_gamma 90 _cell.entry_id 4PD4 _cell.length_a 212.26 _cell.length_b 150.88 _cell.length_c 143.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PD4 _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 363.640439 0 129.492962 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 134 E CYS 164 1_555 E SG CYS 150 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 F SG CYS 28 F CYS 101 1_555 F SG CYS 50 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 J SG CYS 22 J CYS 22 1_555 J SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 K SG CYS 23 K CYS 23 1_555 K SG CYS 88 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 N FE HEM . C HEM 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 O FE HEM . C HEM 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 N FE HEM . C HEM 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 O FE HEM . C HEM 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 T FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc6 D SD MET 164 D MET 225 1_555 T FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 E SG CYS 129 E CYS 159 1_555 U FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 E ND1 HIS 131 E HIS 161 1_555 U FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc9 E SG CYS 148 E CYS 178 1_555 U FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc10 E ND1 HIS 151 E HIS 181 1_555 U FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? # _chem_comp.formula 'C23 H44 O11' _chem_comp.formula_weight 496.589 _chem_comp.id UMQ _chem_comp.mon_nstd_flag . _chem_comp.name UNDECYL-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms UNDECYL-BETA-D-MALTOPYRANOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O2 UMQ sing 746 n n C2 C1 UMQ sing 747 n n C2 C3 UMQ sing 748 n n C2 H21 UMQ sing 749 n n C4 C5 UMQ sing 750 n n C4 O4 UMQ sing 751 n n C4 C3 UMQ sing 752 n n C4 H41 UMQ sing 753 n n C5 C6 UMQ sing 754 n n C5 O5 UMQ sing 755 n n C5 H51 UMQ sing 756 n n C6 O6 UMQ sing 757 n n C6 H61 UMQ sing 758 n n C6 H62 UMQ sing 759 n n O2 HO21 UMQ sing 760 n n O4 HO41 UMQ sing 761 n n C1 O1 UMQ sing 762 n n C1 O5 UMQ sing 763 n n C1 H11 UMQ sing 764 n n C3 O3 UMQ sing 765 n n C3 H31 UMQ sing 766 n n O1 C4' UMQ sing 767 n n O3 HO31 UMQ sing 768 n n O6 HO61 UMQ sing 769 n n C1' C2' UMQ sing 770 n n C1' O1' UMQ sing 771 n n C1' O5' UMQ sing 772 n n C1' "H1'1" UMQ sing 773 n n C2' C3' UMQ sing 774 n n C2' O2' UMQ sing 775 n n C2' "H2'1" UMQ sing 776 n n C3' C4' UMQ sing 777 n n C3' O3' UMQ sing 778 n n C3' "H3'1" UMQ sing 779 n n C4' C5' UMQ sing 780 n n C4' "H4'1" UMQ sing 781 n n C5' C6' UMQ sing 782 n n C5' O5' UMQ sing 783 n n C5' "H5'1" UMQ sing 784 n n C6' O6' UMQ sing 785 n n C6' "H6'1" UMQ sing 786 n n C6' "H6'2" UMQ sing 787 n n O1' CA UMQ sing 788 n n O3' HO3' UMQ sing 789 n n O6' HO6' UMQ sing 790 n n O2' HO2' UMQ sing 791 n n CA CB UMQ sing 792 n n CA HA1 UMQ sing 793 n n CA HA2 UMQ sing 794 n n CB CC UMQ sing 795 n n CB HB1 UMQ sing 796 n n CB HB2 UMQ sing 797 n n CC CD UMQ sing 798 n n CC HC1 UMQ sing 799 n n CC HC2 UMQ sing 800 n n CD CF UMQ sing 801 n n CD HD1 UMQ sing 802 n n CD HD2 UMQ sing 803 n n CF CG UMQ sing 804 n n CF HF1 UMQ sing 805 n n CF HF2 UMQ sing 806 n n CG CH UMQ sing 807 n n CG HG1 UMQ sing 808 n n CG HG2 UMQ sing 809 n n CH CI UMQ sing 810 n n CH HH1 UMQ sing 811 n n CH HH2 UMQ sing 812 n n CI CJ UMQ sing 813 n n CI HI1 UMQ sing 814 n n CI HI2 UMQ sing 815 n n CJ CK UMQ sing 816 n n CJ HJ1 UMQ sing 817 n n CJ HJ2 UMQ sing 818 n n CK CL UMQ sing 819 n n CK HK1 UMQ sing 820 n n CK HK2 UMQ sing 821 n n CL HL1 UMQ sing 822 n n CL HL2 UMQ sing 823 n n CL HL3 UMQ sing 824 n n # _atom_sites.entry_id 4PD4 _atom_sites.fract_transf_matrix[1][1] 0.004711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002215 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 UMQ A 1 501 721 UMQ UMQ . M 13 3PH A 1 502 713 3PH 3PH . N 14 HEM C 1 4001 4001 HEM HEM . O 14 HEM C 1 4002 4002 HEM HEM . P 15 AOQ C 1 4003 1 AOQ AOQ . Q 16 3PE C 1 4004 711 3PE 3PE . R 17 UQ6 C 1 4005 506 UQ6 UQ6 . S 13 3PH C 1 4006 710 3PH 3PH . T 14 HEM D 1 401 4003 HEM HEM . U 18 FES E 1 301 4004 FES FES . V 13 3PH E 1 302 714 3PH 3PH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UMQ . . . L 12 198.246 3.956 36.347 1 38.44 ? C2 UMQ 501 A 1 HETATM 2 C C4 UMQ . . . L 12 200.593 4.928 36.6 1 37.44 ? C4 UMQ 501 A 1 HETATM 3 C C5 UMQ . . . L 12 200.573 4.266 37.978 1 43.18 ? C5 UMQ 501 A 1 HETATM 4 C C6 UMQ . . . L 12 201.488 4.919 39.017 1 45.35 ? C6 UMQ 501 A 1 HETATM 5 O O2 UMQ . . . L 12 197.432 3.102 35.527 1 36.89 ? O2 UMQ 501 A 1 HETATM 6 O O4 UMQ . . . L 12 201.878 4.745 35.992 1 38.23 ? O4 UMQ 501 A 1 HETATM 7 C C1 UMQ . . . L 12 198.464 3.308 37.72 1 40.49 ? C1 UMQ 501 A 1 HETATM 8 C C3 UMQ . . . L 12 199.578 4.28 35.664 1 40.97 ? C3 UMQ 501 A 1 HETATM 9 O O1 UMQ . . . L 12 199.083 2.001 37.64 1 38.28 ? O1 UMQ 501 A 1 HETATM 10 O O3 UMQ . . . L 12 199.352 5.177 34.569 1 42.38 ? O3 UMQ 501 A 1 HETATM 11 O O5 UMQ . . . L 12 199.243 4.215 38.498 1 38.14 ? O5 UMQ 501 A 1 HETATM 12 O O6 UMQ . . . L 12 201.638 4.007 40.124 1 40.27 ? O6 UMQ 501 A 1 HETATM 13 C C1' UMQ . . . L 12 198.02 -1.849 38.883 1 31.02 ? C1' UMQ 501 A 1 HETATM 14 C C2' UMQ . . . L 12 197.067 -1.199 37.875 1 31.01 ? C2' UMQ 501 A 1 HETATM 15 C C3' UMQ . . . L 12 197.471 0.175 37.363 1 33.75 ? C3' UMQ 501 A 1 HETATM 16 C C4' UMQ . . . L 12 198.346 0.981 38.339 1 35.79 ? C4' UMQ 501 A 1 HETATM 17 C C5' UMQ . . . L 12 199.33 0.062 39.057 1 34.57 ? C5' UMQ 501 A 1 HETATM 18 C C6' UMQ . . . L 12 200.238 0.799 40.03 1 40.7 ? C6' UMQ 501 A 1 HETATM 19 O O1' UMQ . . . L 12 197.294 -2.796 39.654 1 25.53 ? O1' UMQ 501 A 1 HETATM 20 O O3' UMQ . . . L 12 196.238 0.845 37.063 1 30.06 ? O3' UMQ 501 A 1 HETATM 21 O O5' UMQ . . . L 12 198.611 -0.922 39.784 1 28.14 ? O5' UMQ 501 A 1 HETATM 22 O O6' UMQ . . . L 12 201.36 -0.057 40.282 1 48.17 ? O6' UMQ 501 A 1 HETATM 23 O O2' UMQ . . . L 12 196.965 -2.043 36.724 1 27.61 ? O2' UMQ 501 A 1 HETATM 24 C CA UMQ . . . L 12 197.934 -4.067 39.658 1 23.78 ? CA UMQ 501 A 1 HETATM 25 C CB UMQ . . . L 12 197.306 -4.835 40.806 1 21.11 ? CB UMQ 501 A 1 HETATM 26 C CC UMQ . . . L 12 197.907 -6.217 40.981 1 21.7 ? CC UMQ 501 A 1 HETATM 27 C CD UMQ . . . L 12 197.599 -6.668 42.402 1 18.44 ? CD UMQ 501 A 1 HETATM 28 C CF UMQ . . . L 12 197.786 -8.166 42.564 1 16.93 ? CF UMQ 501 A 1 HETATM 29 C CG UMQ . . . L 12 197.113 -8.596 43.857 1 19.72 ? CG UMQ 501 A 1 HETATM 30 C CH UMQ . . . L 12 197.342 -10.079 44.111 1 18.55 ? CH UMQ 501 A 1 HETATM 31 C CI UMQ . . . L 12 196.159 -10.713 44.826 1 13.84 ? CI UMQ 501 A 1 HETATM 32 C CJ UMQ . . . L 12 195.841 -10.04 46.155 1 14.1 ? CJ UMQ 501 A 1 HETATM 33 C CK UMQ . . . L 12 195.037 -11.02 47.006 1 19.5 ? CK UMQ 501 A 1 HETATM 34 C CL UMQ . . . L 12 194.616 -10.434 48.339 1 20.49 ? CL UMQ 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #