data_4PD8 # _model_server_result.job_id gmBvTtZ-E8ZakZypmA-p5A _model_server_result.datetime_utc '2024-11-27 10:14:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4PD8 # _exptl.entry_id 4PD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PD8 _cell.length_a 119.636 _cell.length_b 119.636 _cell.length_c 83.064 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 119.636 207.21563 0 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -119.636 207.21563 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 155 A ASN 149 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc2 A OD1 ASN 155 A ASN 149 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc3 A O VAL 158 A VAL 152 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 A OG SER 189 A SER 183 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 A O ILE 190 A ILE 184 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 C NA NA . A NA 502 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 83 n n C40 C43 DMU sing 84 n n C37 C34 DMU sing 85 n n C34 C31 DMU sing 86 n n C31 C28 DMU sing 87 n n C28 C25 DMU sing 88 n n C22 C25 DMU sing 89 n n C22 C19 DMU sing 90 n n O61 C57 DMU sing 91 n n O4 C7 DMU sing 92 n n C18 C19 DMU sing 93 n n C18 O16 DMU sing 94 n n O5 C6 DMU sing 95 n n O5 C4 DMU sing 96 n n C57 C4 DMU sing 97 n n C6 O16 DMU sing 98 n n C6 C1 DMU sing 99 n n C7 C5 DMU sing 100 n n C7 C8 DMU sing 101 n n C4 C3 DMU sing 102 n n O1 C10 DMU sing 103 n n O1 C9 DMU sing 104 n n C10 C5 DMU sing 105 n n C10 O7 DMU sing 106 n n C5 O3 DMU sing 107 n n O49 C1 DMU sing 108 n n C8 C9 DMU sing 109 n n C8 O2 DMU sing 110 n n C1 C2 DMU sing 111 n n C11 C9 DMU sing 112 n n C11 O6 DMU sing 113 n n C3 O7 DMU sing 114 n n C3 C2 DMU sing 115 n n C2 O55 DMU sing 116 n n C1 H1 DMU sing 117 n n C2 H2 DMU sing 118 n n C3 H3 DMU sing 119 n n C4 H4 DMU sing 120 n n C6 H5 DMU sing 121 n n C18 H6 DMU sing 122 n n C18 H7 DMU sing 123 n n C19 H8 DMU sing 124 n n C19 H9 DMU sing 125 n n C22 H10 DMU sing 126 n n C22 H11 DMU sing 127 n n C25 H12 DMU sing 128 n n C25 H13 DMU sing 129 n n C28 H14 DMU sing 130 n n C28 H15 DMU sing 131 n n C31 H16 DMU sing 132 n n C31 H17 DMU sing 133 n n C34 H18 DMU sing 134 n n C34 H19 DMU sing 135 n n C37 H20 DMU sing 136 n n C37 H21 DMU sing 137 n n C40 H22 DMU sing 138 n n C40 H23 DMU sing 139 n n C43 H24 DMU sing 140 n n C43 H25 DMU sing 141 n n C43 H26 DMU sing 142 n n O49 H27 DMU sing 143 n n O55 H28 DMU sing 144 n n C57 H29 DMU sing 145 n n C57 H30 DMU sing 146 n n O61 H31 DMU sing 147 n n C5 H32 DMU sing 148 n n C7 H33 DMU sing 149 n n C8 H34 DMU sing 150 n n C9 H35 DMU sing 151 n n C10 H36 DMU sing 152 n n O2 H37 DMU sing 153 n n O3 H38 DMU sing 154 n n O4 H39 DMU sing 155 n n C11 H40 DMU sing 156 n n C11 H41 DMU sing 157 n n O6 H42 DMU sing 158 n n # _atom_sites.entry_id 4PD8 _atom_sites.fract_transf_matrix[1][1] 0.008359 _atom_sites.fract_transf_matrix[1][2] 0.004826 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P0C A 1 501 1 P0C P06 . C 3 NA A 1 502 1 NA NA . D 4 DMU A 1 503 503 DMU DMU . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . D 4 -22.068 155.394 -15.099 1 72.68 ? C1 DMU 503 A 1 HETATM 2 C C2 DMU . . . D 4 -22.367 154.872 -16.449 1 72.68 ? C2 DMU 503 A 1 HETATM 3 C C3 DMU . . . D 4 -22.252 153.448 -16.545 1 72.68 ? C3 DMU 503 A 1 HETATM 4 C C4 DMU . . . D 4 -22.946 152.719 -15.459 1 72.68 ? C4 DMU 503 A 1 HETATM 5 O O5 DMU . . . D 4 -22.712 153.321 -14.102 1 72.68 ? O5 DMU 503 A 1 HETATM 6 C C6 DMU . . . D 4 -22.886 154.704 -14.053 1 72.68 ? C6 DMU 503 A 1 HETATM 7 O O7 DMU . . . D 4 -22.847 153.008 -17.81 1 72.68 ? O7 DMU 503 A 1 HETATM 8 O O16 DMU . . . D 4 -22.551 155.151 -12.771 1 72.68 ? O16 DMU 503 A 1 HETATM 9 C C18 DMU . . . D 4 -23.199 154.568 -11.633 1 72.68 ? C18 DMU 503 A 1 HETATM 10 C C19 DMU . . . D 4 -22.439 154.543 -10.337 1 72.68 ? C19 DMU 503 A 1 HETATM 11 C C22 DMU . . . D 4 -23.217 154.67 -9.035 1 72.68 ? C22 DMU 503 A 1 HETATM 12 C C25 DMU . . . D 4 -22.576 155.488 -7.909 1 72.68 ? C25 DMU 503 A 1 HETATM 13 C C28 DMU . . . D 4 -22.712 154.997 -6.479 1 72.68 ? C28 DMU 503 A 1 HETATM 14 C C31 DMU . . . D 4 -21.534 155.283 -5.523 1 72.68 ? C31 DMU 503 A 1 HETATM 15 C C34 DMU . . . D 4 -21.774 155.192 -4.039 1 72.68 ? C34 DMU 503 A 1 HETATM 16 C C37 DMU . . . D 4 -20.574 154.821 -3.128 1 72.68 ? C37 DMU 503 A 1 HETATM 17 C C40 DMU . . . D 4 -20.408 153.387 -2.752 1 72.68 ? C40 DMU 503 A 1 HETATM 18 C C43 DMU . . . D 4 -19.057 152.934 -2.265 1 72.68 ? C43 DMU 503 A 1 HETATM 19 O O49 DMU . . . D 4 -22.299 156.788 -15.096 1 72.68 ? O49 DMU 503 A 1 HETATM 20 O O55 DMU . . . D 4 -21.484 155.533 -17.399 1 72.68 ? O55 DMU 503 A 1 HETATM 21 C C57 DMU . . . D 4 -22.6 151.29 -15.45 1 72.68 ? C57 DMU 503 A 1 HETATM 22 O O61 DMU . . . D 4 -21.355 150.918 -15.912 1 72.68 ? O61 DMU 503 A 1 HETATM 23 C C5 DMU . . . D 4 -22.185 153.388 -20.015 1 72.68 ? C5 DMU 503 A 1 HETATM 24 C C7 DMU . . . D 4 -23.477 152.968 -20.613 1 72.68 ? C7 DMU 503 A 1 HETATM 25 C C8 DMU . . . D 4 -23.677 151.567 -20.667 1 72.68 ? C8 DMU 503 A 1 HETATM 26 C C9 DMU . . . D 4 -23.299 150.875 -19.4 1 72.68 ? C9 DMU 503 A 1 HETATM 27 O O1 DMU . . . D 4 -21.941 151.267 -18.954 1 72.68 ? O1 DMU 503 A 1 HETATM 28 C C10 DMU . . . D 4 -21.876 152.647 -18.756 1 72.68 ? C10 DMU 503 A 1 HETATM 29 O O2 DMU . . . D 4 -25.076 151.307 -20.939 1 72.68 ? O2 DMU 503 A 1 HETATM 30 O O3 DMU . . . D 4 -22.253 154.748 -19.717 1 72.68 ? O3 DMU 503 A 1 HETATM 31 O O4 DMU . . . D 4 -23.574 153.501 -21.96 1 72.68 ? O4 DMU 503 A 1 HETATM 32 C C11 DMU . . . D 4 -23.384 149.418 -19.582 1 72.68 ? C11 DMU 503 A 1 HETATM 33 O O6 DMU . . . D 4 -22.34 148.663 -19.148 1 72.68 ? O6 DMU 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 33 #