data_4PDA # _model_server_result.job_id AyiNOnNWVZ2KSlz2chR03w _model_server_result.datetime_utc '2024-11-01 19:36:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4PDA # _exptl.entry_id 4PDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PDA _cell.length_a 120.017 _cell.length_b 120.017 _cell.length_c 82.465 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 60.0085 -103.937771 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 120.017 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 155 A ASN 149 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc2 A OD1 ASN 155 A ASN 149 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc3 A O VAL 158 A VAL 152 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 A OG SER 189 A SER 183 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc5 A O ILE 190 A ILE 184 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 C NA NA . A NA 502 1_555 E O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 114 n n C40 C43 DMU sing 115 n n C37 C34 DMU sing 116 n n C34 C31 DMU sing 117 n n C31 C28 DMU sing 118 n n C28 C25 DMU sing 119 n n C22 C25 DMU sing 120 n n C22 C19 DMU sing 121 n n O61 C57 DMU sing 122 n n O4 C7 DMU sing 123 n n C18 C19 DMU sing 124 n n C18 O16 DMU sing 125 n n O5 C6 DMU sing 126 n n O5 C4 DMU sing 127 n n C57 C4 DMU sing 128 n n C6 O16 DMU sing 129 n n C6 C1 DMU sing 130 n n C7 C5 DMU sing 131 n n C7 C8 DMU sing 132 n n C4 C3 DMU sing 133 n n O1 C10 DMU sing 134 n n O1 C9 DMU sing 135 n n C10 C5 DMU sing 136 n n C10 O7 DMU sing 137 n n C5 O3 DMU sing 138 n n O49 C1 DMU sing 139 n n C8 C9 DMU sing 140 n n C8 O2 DMU sing 141 n n C1 C2 DMU sing 142 n n C11 C9 DMU sing 143 n n C11 O6 DMU sing 144 n n C3 O7 DMU sing 145 n n C3 C2 DMU sing 146 n n C2 O55 DMU sing 147 n n C1 H1 DMU sing 148 n n C2 H2 DMU sing 149 n n C3 H3 DMU sing 150 n n C4 H4 DMU sing 151 n n C6 H5 DMU sing 152 n n C18 H6 DMU sing 153 n n C18 H7 DMU sing 154 n n C19 H8 DMU sing 155 n n C19 H9 DMU sing 156 n n C22 H10 DMU sing 157 n n C22 H11 DMU sing 158 n n C25 H12 DMU sing 159 n n C25 H13 DMU sing 160 n n C28 H14 DMU sing 161 n n C28 H15 DMU sing 162 n n C31 H16 DMU sing 163 n n C31 H17 DMU sing 164 n n C34 H18 DMU sing 165 n n C34 H19 DMU sing 166 n n C37 H20 DMU sing 167 n n C37 H21 DMU sing 168 n n C40 H22 DMU sing 169 n n C40 H23 DMU sing 170 n n C43 H24 DMU sing 171 n n C43 H25 DMU sing 172 n n C43 H26 DMU sing 173 n n O49 H27 DMU sing 174 n n O55 H28 DMU sing 175 n n C57 H29 DMU sing 176 n n C57 H30 DMU sing 177 n n O61 H31 DMU sing 178 n n C5 H32 DMU sing 179 n n C7 H33 DMU sing 180 n n C8 H34 DMU sing 181 n n C9 H35 DMU sing 182 n n C10 H36 DMU sing 183 n n O2 H37 DMU sing 184 n n O3 H38 DMU sing 185 n n O4 H39 DMU sing 186 n n C11 H40 DMU sing 187 n n C11 H41 DMU sing 188 n n O6 H42 DMU sing 189 n n # _atom_sites.entry_id 4PDA _atom_sites.fract_transf_matrix[1][1] 0.008332 _atom_sites.fract_transf_matrix[1][2] 0.004811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CTN A 1 501 1 CTN Cr . C 3 NA A 1 502 1 NA NA . D 4 DMU A 1 503 503 DMU DMU . E 5 HOH A 1 601 37 HOH HOH . E 5 HOH A 2 602 17 HOH HOH . E 5 HOH A 3 603 1 HOH HOH . E 5 HOH A 4 604 2 HOH HOH . E 5 HOH A 5 605 3 HOH HOH . E 5 HOH A 6 606 4 HOH HOH . E 5 HOH A 7 607 6 HOH HOH . E 5 HOH A 8 608 7 HOH HOH . E 5 HOH A 9 609 8 HOH HOH . E 5 HOH A 10 610 14 HOH HOH . E 5 HOH A 11 611 19 HOH HOH . E 5 HOH A 12 612 25 HOH HOH . E 5 HOH A 13 613 27 HOH HOH . E 5 HOH A 14 614 28 HOH HOH . E 5 HOH A 15 615 29 HOH HOH . E 5 HOH A 16 616 32 HOH HOH . E 5 HOH A 17 617 33 HOH HOH . E 5 HOH A 18 618 38 HOH HOH . E 5 HOH A 19 619 40 HOH HOH . E 5 HOH A 20 620 41 HOH HOH . E 5 HOH A 21 621 42 HOH HOH . E 5 HOH A 22 622 47 HOH HOH . E 5 HOH A 23 623 53 HOH HOH . E 5 HOH A 24 624 58 HOH HOH . E 5 HOH A 25 625 1 HOH HOH . E 5 HOH A 26 626 1 HOH HOH . E 5 HOH A 27 627 1 HOH HOH . E 5 HOH A 28 628 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . D 4 63.851 -6.853 -14.72 1 62.63 ? C1 DMU 503 A 1 HETATM 2 C C2 DMU . . . D 4 63.25 -6.904 -16.073 1 62.63 ? C2 DMU 503 A 1 HETATM 3 C C3 DMU . . . D 4 62.065 -7.703 -16.146 1 62.63 ? C3 DMU 503 A 1 HETATM 4 C C4 DMU . . . D 4 61.082 -7.367 -15.09 1 62.63 ? C4 DMU 503 A 1 HETATM 5 O O5 DMU . . . D 4 61.709 -7.271 -13.726 1 62.63 ? O5 DMU 503 A 1 HETATM 6 C C6 DMU . . . D 4 62.855 -6.475 -13.665 1 62.63 ? C6 DMU 503 A 1 HETATM 7 O O7 DMU . . . D 4 61.417 -7.466 -17.442 1 62.63 ? O7 DMU 503 A 1 HETATM 8 O O16 DMU . . . D 4 63.422 -6.594 -12.39 1 62.63 ? O16 DMU 503 A 1 HETATM 9 C C18 DMU . . . D 4 62.708 -6.162 -11.225 1 62.63 ? C18 DMU 503 A 1 HETATM 10 C C19 DMU . . . D 4 63.011 -6.87 -9.936 1 62.63 ? C19 DMU 503 A 1 HETATM 11 C C22 DMU . . . D 4 63.043 -6.062 -8.648 1 62.63 ? C22 DMU 503 A 1 HETATM 12 C C25 DMU . . . D 4 63.892 -6.622 -7.498 1 62.63 ? C25 DMU 503 A 1 HETATM 13 C C28 DMU . . . D 4 63.337 -6.612 -6.081 1 62.63 ? C28 DMU 503 A 1 HETATM 14 C C31 DMU . . . D 4 63.947 -7.642 -5.105 1 62.63 ? C31 DMU 503 A 1 HETATM 15 C C34 DMU . . . D 4 63.701 -7.49 -3.625 1 62.63 ? C34 DMU 503 A 1 HETATM 16 C C37 DMU . . . D 4 64.016 -8.706 -2.709 1 62.63 ? C37 DMU 503 A 1 HETATM 17 C C40 DMU . . . D 4 62.89 -9.628 -2.368 1 62.63 ? C40 DMU 503 A 1 HETATM 18 C C43 DMU . . . D 4 63.222 -11.035 -1.94 1 62.63 ? C43 DMU 503 A 1 HETATM 19 O O49 DMU . . . D 4 64.938 -5.944 -14.749 1 62.63 ? O49 DMU 503 A 1 HETATM 20 O O55 DMU . . . D 4 64.255 -7.398 -17.004 1 62.63 ? O55 DMU 503 A 1 HETATM 21 C C57 DMU . . . D 4 59.944 -8.3 -15.076 1 62.63 ? C57 DMU 503 A 1 HETATM 22 O O61 DMU . . . D 4 60.148 -9.6 -15.485 1 62.63 ? O61 DMU 503 A 1 HETATM 23 C C5 DMU . . . D 4 62.074 -8.012 -19.584 1 62.63 ? C5 DMU 503 A 1 HETATM 24 C C7 DMU . . . D 4 61.216 -6.943 -20.156 1 62.63 ? C7 DMU 503 A 1 HETATM 25 C C8 DMU . . . D 4 59.834 -7.257 -20.212 1 62.63 ? C8 DMU 503 A 1 HETATM 26 C C9 DMU . . . D 4 59.318 -7.948 -18.991 1 62.63 ? C9 DMU 503 A 1 HETATM 27 O O1 DMU . . . D 4 60.208 -9.05 -18.557 1 62.63 ? O1 DMU 503 A 1 HETATM 28 C C10 DMU . . . D 4 61.498 -8.556 -18.325 1 62.63 ? C10 DMU 503 A 1 HETATM 29 O O2 DMU . . . D 4 59.089 -6.024 -20.4 1 62.63 ? O2 DMU 503 A 1 HETATM 30 O O3 DMU . . . D 4 63.327 -7.477 -19.288 1 62.63 ? O3 DMU 503 A 1 HETATM 31 O O4 DMU . . . D 4 61.661 -6.644 -21.505 1 62.63 ? O4 DMU 503 A 1 HETATM 32 C C11 DMU . . . D 4 57.964 -8.458 -19.256 1 62.63 ? C11 DMU 503 A 1 HETATM 33 O O6 DMU . . . D 4 57.559 -9.603 -18.632 1 62.63 ? O6 DMU 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #