data_4PDJ
#
_model_server_result.job_id            BEal_I2NtwrUJqh_6NG3OQ 
_model_server_result.datetime_utc      '2024-11-27 00:01:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pdj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4PDJ 
#
loop_
_exptl.entry_id
_exptl.method
4PDJ 'X-RAY DIFFRACTION' 
4PDJ 'NEUTRON DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PDJ 
_cell.length_a            34.293 
_cell.length_b            45.625 
_cell.length_c            98.974 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PDJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 70 A ASP 70 1_555 C MN MN . A MN 202 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A OD1 ASP 87 A ASP 87 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc3 A O ASP 116 A ASP 116 1_555 B MN MN . A MN 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc4 A ND1 HIS 149 A HIS 149 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc5 A O ARG 159 A ARG 159 1_555 B MN MN . A MN 201 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc6 B MN MN . A MN 201 1_555 F O DOD . A DOD 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc7 B MN MN . A MN 201 1_555 F O DOD . A DOD 338 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc8 C MN MN . A MN 202 1_555 F O DOD . A DOD 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4PDJ 
_atom_sites.fract_transf_matrix[1][1]    0.02916 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010104 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 200 MN MN . 
C 2 MN A 1 202 300 MN MN . 
D 3 DHF A 1 203 161 DHF FO9 . 
E 4 NDP A 1 204 164 NDP NAP . 
F 5 DOD A 1 301 76 DOD DOD . 
F 5 DOD A 2 302 114 DOD DOD . 
F 5 DOD A 3 303 82 DOD DOD . 
F 5 DOD A 4 304 93 DOD DOD . 
F 5 DOD A 5 305 129 DOD DOD . 
F 5 DOD A 6 306 49 DOD DOD . 
F 5 DOD A 7 307 5 DOD DOD . 
F 5 DOD A 8 308 97 DOD DOD . 
F 5 DOD A 9 309 9 DOD DOD . 
F 5 DOD A 10 310 12 DOD DOD . 
F 5 DOD A 11 311 38 DOD DOD . 
F 5 DOD A 12 312 62 DOD DOD . 
F 5 DOD A 13 313 39 DOD DOD . 
F 5 DOD A 14 314 59 DOD DOD . 
F 5 DOD A 15 315 79 DOD DOD . 
F 5 DOD A 16 316 115 DOD DOD . 
F 5 DOD A 17 317 119 DOD DOD . 
F 5 DOD A 18 318 111 DOD DOD . 
F 5 DOD A 19 319 17 DOD DOD . 
F 5 DOD A 20 320 64 DOD DOD . 
F 5 DOD A 21 321 8 DOD DOD . 
F 5 DOD A 22 322 81 DOD DOD . 
F 5 DOD A 23 323 116 DOD DOD . 
F 5 DOD A 24 324 22 DOD DOD . 
F 5 DOD A 25 325 40 DOD DOD . 
F 5 DOD A 26 326 99 DOD DOD . 
F 5 DOD A 27 327 69 DOD DOD . 
F 5 DOD A 28 328 106 DOD DOD . 
F 5 DOD A 29 329 16 DOD DOD . 
F 5 DOD A 30 330 4 DOD DOD . 
F 5 DOD A 31 331 15 DOD DOD . 
F 5 DOD A 32 332 80 DOD DOD . 
F 5 DOD A 33 333 24 DOD DOD . 
F 5 DOD A 34 334 48 DOD DOD . 
F 5 DOD A 35 335 68 DOD DOD . 
F 5 DOD A 36 336 109 DOD DOD . 
F 5 DOD A 37 337 91 DOD DOD . 
F 5 DOD A 38 338 36 DOD DOD . 
F 5 DOD A 39 339 37 DOD DOD . 
F 5 DOD A 40 340 128 DOD DOD . 
F 5 DOD A 41 341 92 DOD DOD . 
F 5 DOD A 42 342 88 DOD DOD . 
F 5 DOD A 43 343 75 DOD DOD . 
F 5 DOD A 44 344 27 DOD DOD . 
F 5 DOD A 45 345 108 DOD DOD . 
F 5 DOD A 46 346 83 DOD DOD . 
F 5 DOD A 47 347 14 DOD DOD . 
F 5 DOD A 48 348 105 DOD DOD . 
F 5 DOD A 49 349 96 DOD DOD . 
F 5 DOD A 50 350 112 DOD DOD . 
F 5 DOD A 51 351 90 DOD DOD . 
F 5 DOD A 52 352 58 DOD DOD . 
F 5 DOD A 53 353 63 DOD DOD . 
F 5 DOD A 54 354 71 DOD DOD . 
F 5 DOD A 55 355 23 DOD DOD . 
F 5 DOD A 56 356 56 DOD DOD . 
F 5 DOD A 57 357 102 DOD DOD . 
F 5 DOD A 58 358 86 DOD DOD . 
F 5 DOD A 59 359 125 DOD DOD . 
F 5 DOD A 60 360 103 DOD DOD . 
F 5 DOD A 61 361 101 DOD DOD . 
F 5 DOD A 62 362 124 DOD DOD . 
F 5 DOD A 63 363 127 DOD DOD . 
F 5 DOD A 64 364 113 DOD DOD . 
F 5 DOD A 65 365 2 DOD DOD . 
F 5 DOD A 66 366 6 DOD DOD . 
F 5 DOD A 67 367 7 DOD DOD . 
F 5 DOD A 68 368 10 DOD DOD . 
F 5 DOD A 69 369 11 DOD DOD . 
F 5 DOD A 70 370 13 DOD DOD . 
F 5 DOD A 71 371 18 DOD DOD . 
F 5 DOD A 72 372 20 DOD DOD . 
F 5 DOD A 73 373 21 DOD DOD . 
F 5 DOD A 74 374 25 DOD DOD . 
F 5 DOD A 75 375 26 DOD DOD . 
F 5 DOD A 76 376 28 DOD DOD . 
F 5 DOD A 77 377 29 DOD DOD . 
F 5 DOD A 78 378 30 DOD DOD . 
F 5 DOD A 79 379 31 DOD DOD . 
F 5 DOD A 80 380 32 DOD DOD . 
F 5 DOD A 81 381 33 DOD DOD . 
F 5 DOD A 82 382 34 DOD DOD . 
F 5 DOD A 83 383 35 DOD DOD . 
F 5 DOD A 84 384 41 DOD DOD . 
F 5 DOD A 85 385 42 DOD DOD . 
F 5 DOD A 86 386 43 DOD DOD . 
F 5 DOD A 87 387 44 DOD DOD . 
F 5 DOD A 88 388 45 DOD DOD . 
F 5 DOD A 89 389 46 DOD DOD . 
F 5 DOD A 90 390 47 DOD DOD . 
F 5 DOD A 91 391 50 DOD DOD . 
F 5 DOD A 92 392 51 DOD DOD . 
F 5 DOD A 93 393 52 DOD DOD . 
F 5 DOD A 94 394 54 DOD DOD . 
F 5 DOD A 95 395 55 DOD DOD . 
F 5 DOD A 96 396 60 DOD DOD . 
F 5 DOD A 97 397 61 DOD DOD . 
F 5 DOD A 98 398 65 DOD DOD . 
F 5 DOD A 99 399 66 DOD DOD . 
F 5 DOD A 100 400 67 DOD DOD . 
F 5 DOD A 101 401 70 DOD DOD . 
F 5 DOD A 102 402 72 DOD DOD . 
F 5 DOD A 103 403 73 DOD DOD . 
F 5 DOD A 104 404 74 DOD DOD . 
F 5 DOD A 105 405 77 DOD DOD . 
F 5 DOD A 106 406 78 DOD DOD . 
F 5 DOD A 107 407 84 DOD DOD . 
F 5 DOD A 108 408 85 DOD DOD . 
F 5 DOD A 109 409 87 DOD DOD . 
F 5 DOD A 110 410 89 DOD DOD . 
F 5 DOD A 111 411 94 DOD DOD . 
F 5 DOD A 112 412 95 DOD DOD . 
F 5 DOD A 113 413 98 DOD DOD . 
F 5 DOD A 114 414 104 DOD DOD . 
F 5 DOD A 115 415 110 DOD DOD . 
F 5 DOD A 116 416 117 DOD DOD . 
F 5 DOD A 117 417 118 DOD DOD . 
F 5 DOD A 118 418 120 DOD DOD . 
F 5 DOD A 119 419 122 DOD DOD . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               43.122 
_atom_site.Cartn_y               33.219 
_atom_site.Cartn_z               21.365 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           47 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#