data_4PDM # _model_server_result.job_id MTcgJip6UaemQCUE2JAD8w _model_server_result.datetime_utc '2024-11-12 20:41:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4PDM # _exptl.entry_id 4PDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 85.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUBIDIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PDM _cell.length_a 68.011 _cell.length_b 68.011 _cell.length_c 89.346 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1,2,3,4 B,G,H,I,J,K,M 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 46 A THR 63 1_555 D RB RB . A RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc2 A O THR 46 A THR 63 1_555 D RB RB . A RB 202 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc3 A O THR 46 A THR 63 1_555 E RB RB . A RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc4 A OG1 THR 46 A THR 63 1_555 E RB RB . A RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 A O THR 46 A THR 63 1_555 E RB RB . A RB 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc6 A OG1 THR 46 A THR 63 1_555 E RB RB . A RB 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc7 A O VAL 47 A VAL 64 1_555 D RB RB . A RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc8 A O VAL 47 A VAL 64 1_555 D RB RB . A RB 202 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc9 A O GLY 48 A GLY 65 1_555 C RB RB . A RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc10 A O GLY 48 A GLY 65 1_555 C RB RB . A RB 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc11 A O TYR 49 A TYR 66 1_555 C RB RB . A RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc12 A O TYR 49 A TYR 66 1_555 C RB RB . A RB 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc13 B O THR 46 B THR 63 1_555 G RB RB . B RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc14 B OG1 THR 46 B THR 63 1_555 G RB RB . B RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc15 B O THR 46 B THR 63 1_555 G RB RB . B RB 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc16 B OG1 THR 46 B THR 63 1_555 G RB RB . B RB 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc17 B O THR 46 B THR 63 1_555 H RB RB . B RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc18 B O THR 46 B THR 63 1_555 H RB RB . B RB 202 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc19 B O VAL 47 B VAL 64 1_555 H RB RB . B RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc20 B O VAL 47 B VAL 64 1_555 H RB RB . B RB 202 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc21 B O GLY 48 B GLY 65 1_555 I RB RB . B RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc22 B O GLY 48 B GLY 65 1_555 I RB RB . B RB 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc23 B O TYR 49 B TYR 66 1_555 I RB RB . B RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc24 B O TYR 49 B TYR 66 1_555 I RB RB . B RB 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? # _chem_comp.formula 'Rb 1' _chem_comp.formula_weight 85.468 _chem_comp.id RB _chem_comp.mon_nstd_flag . _chem_comp.name 'RUBIDIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PDM _atom_sites.fract_transf_matrix[1][1] 0.014704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RB A 1 201 1 RB RB . D 2 RB A 1 202 2 RB RB . E 2 RB A 1 203 3 RB RB . F 3 MPD A 1 204 4 MPD MPD . G 2 RB B 1 201 4 RB RB . H 2 RB B 1 202 5 RB RB . I 2 RB B 1 203 6 RB RB . J 3 MPD B 1 204 1 MPD MPD . K 3 MPD B 1 205 3 MPD MPD . L 4 HOH A 1 301 45 HOH HOH . L 4 HOH A 2 302 59 HOH HOH . L 4 HOH A 3 303 5 HOH HOH . L 4 HOH A 4 304 6 HOH HOH . L 4 HOH A 5 305 17 HOH HOH . L 4 HOH A 6 306 80 HOH HOH . L 4 HOH A 7 307 1 HOH HOH . L 4 HOH A 8 308 18 HOH HOH . L 4 HOH A 9 309 15 HOH HOH . L 4 HOH A 10 310 47 HOH HOH . L 4 HOH A 11 311 3 HOH HOH . L 4 HOH A 12 312 25 HOH HOH . L 4 HOH A 13 313 7 HOH HOH . L 4 HOH A 14 314 53 HOH HOH . L 4 HOH A 15 315 19 HOH HOH . L 4 HOH A 16 316 4 HOH HOH . L 4 HOH A 17 317 54 HOH HOH . L 4 HOH A 18 318 43 HOH HOH . L 4 HOH A 19 319 77 HOH HOH . L 4 HOH A 20 320 49 HOH HOH . L 4 HOH A 21 321 27 HOH HOH . L 4 HOH A 22 322 31 HOH HOH . L 4 HOH A 23 323 34 HOH HOH . L 4 HOH A 24 324 67 HOH HOH . L 4 HOH A 25 325 76 HOH HOH . L 4 HOH A 26 326 2 HOH HOH . L 4 HOH A 27 327 10 HOH HOH . L 4 HOH A 28 328 11 HOH HOH . L 4 HOH A 29 329 12 HOH HOH . L 4 HOH A 30 330 14 HOH HOH . L 4 HOH A 31 331 16 HOH HOH . L 4 HOH A 32 332 21 HOH HOH . L 4 HOH A 33 333 28 HOH HOH . L 4 HOH A 34 334 29 HOH HOH . L 4 HOH A 35 335 30 HOH HOH . L 4 HOH A 36 336 32 HOH HOH . L 4 HOH A 37 337 33 HOH HOH . L 4 HOH A 38 338 39 HOH HOH . L 4 HOH A 39 339 48 HOH HOH . L 4 HOH A 40 340 50 HOH HOH . L 4 HOH A 41 341 52 HOH HOH . L 4 HOH A 42 342 56 HOH HOH . L 4 HOH A 43 343 57 HOH HOH . L 4 HOH A 44 344 58 HOH HOH . L 4 HOH A 45 345 60 HOH HOH . L 4 HOH A 46 346 61 HOH HOH . L 4 HOH A 47 347 65 HOH HOH . L 4 HOH A 48 348 66 HOH HOH . L 4 HOH A 49 349 68 HOH HOH . L 4 HOH A 50 350 69 HOH HOH . L 4 HOH A 51 351 70 HOH HOH . L 4 HOH A 52 352 71 HOH HOH . L 4 HOH A 53 353 75 HOH HOH . L 4 HOH A 54 354 78 HOH HOH . L 4 HOH A 55 355 79 HOH HOH . M 4 HOH B 1 301 22 HOH HOH . M 4 HOH B 2 302 46 HOH HOH . M 4 HOH B 3 303 51 HOH HOH . M 4 HOH B 4 304 35 HOH HOH . M 4 HOH B 5 305 13 HOH HOH . M 4 HOH B 6 306 41 HOH HOH . M 4 HOH B 7 307 44 HOH HOH . M 4 HOH B 8 308 38 HOH HOH . M 4 HOH B 9 309 55 HOH HOH . M 4 HOH B 10 310 72 HOH HOH . M 4 HOH B 11 311 20 HOH HOH . M 4 HOH B 12 312 8 HOH HOH . M 4 HOH B 13 313 23 HOH HOH . M 4 HOH B 14 314 24 HOH HOH . M 4 HOH B 15 315 26 HOH HOH . M 4 HOH B 16 316 36 HOH HOH . M 4 HOH B 17 317 37 HOH HOH . M 4 HOH B 18 318 40 HOH HOH . M 4 HOH B 19 319 42 HOH HOH . M 4 HOH B 20 320 62 HOH HOH . M 4 HOH B 21 321 63 HOH HOH . M 4 HOH B 22 322 64 HOH HOH . M 4 HOH B 23 323 73 HOH HOH . M 4 HOH B 24 324 74 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RB _atom_site.label_atom_id RB _atom_site.label_comp_id RB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z 18.989 _atom_site.occupancy 0.19 _atom_site.B_iso_or_equiv 15.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RB _atom_site.auth_comp_id RB _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #