data_4PDR
#
_model_server_result.job_id            g276jd7wXk50Xg_fADs4kQ 
_model_server_result.datetime_utc      '2025-07-01 18:39:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    4PDR 
#
_exptl.entry_id    4PDR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              137.327 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BARIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PDR 
_cell.length_a            68.042 
_cell.length_b            68.042 
_cell.length_c            89.627 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1,2,3,4 
B,H,I,J,K,L,M,N,P 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 46 A THR 63 1_555 C BA BA . A BA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc2 A O THR 46 A THR 63 1_555 C BA BA . A BA 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc3 A OG1 THR 46 A THR 63 1_555 F NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc4 A OG1 THR 46 A THR 63 1_555 F NA NA . A NA 204 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc5 A O VAL 47 A VAL 64 1_555 C BA BA . A BA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc6 A O VAL 47 A VAL 64 1_555 C BA BA . A BA 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc7 A O GLY 48 A GLY 65 1_555 D BA BA . A BA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc8 A O GLY 48 A GLY 65 1_555 D BA BA . A BA 202 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc9 A O TYR 49 A TYR 66 1_555 D BA BA . A BA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? 
metalc ? metalc10 A O TYR 49 A TYR 66 1_555 D BA BA . A BA 202 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? 
metalc ? metalc11 A O TYR 49 A TYR 66 1_555 E BA BA . A BA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc12 A O TYR 49 A TYR 66 1_555 E BA BA . A BA 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc13 C BA BA . A BA 201 1_555 O O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc14 C BA BA . A BA 201 1_555 O O HOH . A HOH 312 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc15 D BA BA . A BA 202 1_555 O O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? 
metalc ? metalc16 D BA BA . A BA 202 1_555 O O HOH . A HOH 312 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? 
metalc ? metalc17 E BA BA . A BA 203 1_555 O O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc18 E BA BA . A BA 203 1_555 O O HOH . A HOH 311 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc19 F NA NA . A NA 204 1_555 O O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc20 F NA NA . A NA 204 1_555 O O HOH . A HOH 318 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc21 B O THR 46 B THR 63 1_555 H BA BA . B BA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc22 B O THR 46 B THR 63 1_555 H BA BA . B BA 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc23 B OG1 THR 46 B THR 63 1_555 K NA NA . B NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc24 B OG1 THR 46 B THR 63 1_555 K NA NA . B NA 204 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc25 B O VAL 47 B VAL 64 1_555 H BA BA . B BA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc26 B O VAL 47 B VAL 64 1_555 H BA BA . B BA 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc27 B O GLY 48 B GLY 65 1_555 J BA BA . B BA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? 
metalc ? metalc28 B O GLY 48 B GLY 65 1_555 J BA BA . B BA 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? 
metalc ? metalc29 B O TYR 49 B TYR 66 1_555 I BA BA . B BA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
metalc ? metalc30 B O TYR 49 B TYR 66 1_555 I BA BA . B BA 202 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
metalc ? metalc31 B O TYR 49 B TYR 66 1_555 J BA BA . B BA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? 
metalc ? metalc32 B O TYR 49 B TYR 66 1_555 J BA BA . B BA 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? 
metalc ? metalc33 K NA NA . B NA 204 1_555 P O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc34 K NA NA . B NA 204 1_555 P O HOH . B HOH 311 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
#
_chem_comp.formula           'Ba 2' 
_chem_comp.formula_weight    137.327 
_chem_comp.id                BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BARIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4PDR 
_atom_sites.fract_transf_matrix[1][1]    0.014697 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BA A 1 201 201 BA BA . 
D 2 BA A 1 202 202 BA BA . 
E 2 BA A 1 203 203 BA BA . 
F 3 NA A 1 204 204 NA NA . 
G 4 MPD A 1 205 205 MPD MPD . 
H 2 BA B 1 201 201 BA BA . 
I 2 BA B 1 202 202 BA BA . 
J 2 BA B 1 203 203 BA BA . 
K 3 NA B 1 204 204 NA NA . 
L 4 MPD B 1 205 205 MPD MPD . 
M 4 MPD B 1 206 206 MPD MPD . 
N 4 MPD B 1 207 207 MPD MPD . 
O 5 HOH A 1 301 301 HOH HOH . 
O 5 HOH A 2 302 302 HOH HOH . 
O 5 HOH A 3 303 303 HOH HOH . 
O 5 HOH A 4 304 304 HOH HOH . 
O 5 HOH A 5 305 305 HOH HOH . 
O 5 HOH A 6 306 306 HOH HOH . 
O 5 HOH A 7 307 307 HOH HOH . 
O 5 HOH A 8 308 308 HOH HOH . 
O 5 HOH A 9 309 310 HOH HOH . 
O 5 HOH A 10 310 311 HOH HOH . 
O 5 HOH A 11 311 312 HOH HOH . 
O 5 HOH A 12 312 313 HOH HOH . 
O 5 HOH A 13 313 314 HOH HOH . 
O 5 HOH A 14 314 315 HOH HOH . 
O 5 HOH A 15 315 316 HOH HOH . 
O 5 HOH A 16 316 317 HOH HOH . 
O 5 HOH A 17 317 318 HOH HOH . 
O 5 HOH A 18 318 319 HOH HOH . 
O 5 HOH A 19 319 320 HOH HOH . 
O 5 HOH A 20 320 321 HOH HOH . 
O 5 HOH A 21 321 322 HOH HOH . 
O 5 HOH A 22 322 323 HOH HOH . 
O 5 HOH A 23 323 324 HOH HOH . 
O 5 HOH A 24 324 325 HOH HOH . 
O 5 HOH A 25 325 326 HOH HOH . 
O 5 HOH A 26 326 327 HOH HOH . 
O 5 HOH A 27 327 328 HOH HOH . 
O 5 HOH A 28 328 329 HOH HOH . 
O 5 HOH A 29 329 330 HOH HOH . 
O 5 HOH A 30 330 331 HOH HOH . 
O 5 HOH A 31 331 332 HOH HOH . 
O 5 HOH A 32 332 333 HOH HOH . 
O 5 HOH A 33 333 334 HOH HOH . 
O 5 HOH A 34 334 335 HOH HOH . 
O 5 HOH A 35 335 336 HOH HOH . 
O 5 HOH A 36 336 337 HOH HOH . 
O 5 HOH A 37 337 338 HOH HOH . 
P 5 HOH B 1 301 301 HOH HOH . 
P 5 HOH B 2 302 302 HOH HOH . 
P 5 HOH B 3 303 303 HOH HOH . 
P 5 HOH B 4 304 304 HOH HOH . 
P 5 HOH B 5 305 305 HOH HOH . 
P 5 HOH B 6 306 306 HOH HOH . 
P 5 HOH B 7 307 307 HOH HOH . 
P 5 HOH B 8 308 308 HOH HOH . 
P 5 HOH B 9 309 309 HOH HOH . 
P 5 HOH B 10 310 310 HOH HOH . 
P 5 HOH B 11 311 311 HOH HOH . 
P 5 HOH B 12 312 312 HOH HOH . 
P 5 HOH B 13 313 313 HOH HOH . 
P 5 HOH B 14 314 314 HOH HOH . 
P 5 HOH B 15 315 315 HOH HOH . 
P 5 HOH B 16 316 316 HOH HOH . 
P 5 HOH B 17 317 317 HOH HOH . 
P 5 HOH B 18 318 318 HOH HOH . 
P 5 HOH B 19 319 319 HOH HOH . 
P 5 HOH B 20 320 320 HOH HOH . 
P 5 HOH B 21 321 321 HOH HOH . 
P 5 HOH B 22 322 322 HOH HOH . 
P 5 HOH B 23 323 323 HOH HOH . 
P 5 HOH B 24 324 324 HOH HOH . 
P 5 HOH B 25 325 325 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           BA 
_atom_site.label_atom_id         BA 
_atom_site.label_comp_id         BA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               0 
_atom_site.Cartn_y               0 
_atom_site.Cartn_z               -16.988 
_atom_site.occupancy             0.22 
_atom_site.B_iso_or_equiv        36.49 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          BA 
_atom_site.auth_comp_id          BA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#