data_4PDZ # _model_server_result.job_id bqQ-Q-BLTGZnHJtd3wlAlQ _model_server_result.datetime_utc '2024-10-11 02:16:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 4PDZ # _exptl.entry_id 4PDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.97 _cell.angle_gamma 90 _cell.entry_id 4PDZ _cell.length_a 34.988 _cell.length_b 57.119 _cell.length_c 47.998 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PDZ _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 85 B CYS 84 1_555 E C12 CTI . B CTI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc1 A O SER 19 A SER 18 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc7 A OD2 ASP 62 A ASP 61 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc10 A O GLU 68 A GLU 67 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc13 C CA CA . A CA 101 1_555 H O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc14 D CA CA . A CA 102 1_555 H O HOH . A HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc15 B O SER 19 B SER 18 1_555 F CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc16 B O GLU 22 B GLU 21 1_555 F CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc17 B O ASP 24 B ASP 23 1_555 F CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc18 B O LYS 27 B LYS 26 1_555 F CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc19 B OE1 GLU 32 B GLU 31 1_555 F CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc20 B OE2 GLU 32 B GLU 31 1_555 F CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc21 B OD1 ASP 62 B ASP 61 1_555 G CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc22 B OD1 ASP 64 B ASP 63 1_555 G CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc23 B OD2 ASP 64 B ASP 63 1_555 G CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc24 B OD1 ASP 66 B ASP 65 1_555 G CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc25 B O GLU 68 B GLU 67 1_555 G CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc26 B OE1 GLU 73 B GLU 72 1_555 G CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc27 B OE2 GLU 73 B GLU 72 1_555 G CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc28 F CA CA . B CA 102 1_555 I O HOH . B HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc29 G CA CA . B CA 103 1_555 I O HOH . B HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PDZ _atom_sites.fract_transf_matrix[1][1] 0.028581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010955 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 101 1 CA CA . D 2 CA A 1 102 1 CA CA . E 3 CTI B 1 101 200 CTI CTI . F 2 CA B 1 102 1 CA CA . G 2 CA B 1 103 1 CA CA . H 4 HOH A 1 201 59 HOH HOH . H 4 HOH A 2 202 57 HOH HOH . H 4 HOH A 3 203 66 HOH HOH . H 4 HOH A 4 204 15 HOH HOH . H 4 HOH A 5 205 64 HOH HOH . H 4 HOH A 6 206 58 HOH HOH . H 4 HOH A 7 207 32 HOH HOH . H 4 HOH A 8 208 54 HOH HOH . H 4 HOH A 9 209 42 HOH HOH . H 4 HOH A 10 210 48 HOH HOH . H 4 HOH A 11 211 45 HOH HOH . H 4 HOH A 12 212 61 HOH HOH . H 4 HOH A 13 213 50 HOH HOH . H 4 HOH A 14 214 47 HOH HOH . H 4 HOH A 15 215 72 HOH HOH . H 4 HOH A 16 216 53 HOH HOH . H 4 HOH A 17 217 3 HOH HOH . H 4 HOH A 18 218 4 HOH HOH . H 4 HOH A 19 219 5 HOH HOH . H 4 HOH A 20 220 9 HOH HOH . H 4 HOH A 21 221 12 HOH HOH . H 4 HOH A 22 222 13 HOH HOH . H 4 HOH A 23 223 14 HOH HOH . H 4 HOH A 24 224 18 HOH HOH . H 4 HOH A 25 225 23 HOH HOH . H 4 HOH A 26 226 24 HOH HOH . H 4 HOH A 27 227 25 HOH HOH . H 4 HOH A 28 228 26 HOH HOH . H 4 HOH A 29 229 28 HOH HOH . H 4 HOH A 30 230 29 HOH HOH . H 4 HOH A 31 231 36 HOH HOH . H 4 HOH A 32 232 37 HOH HOH . H 4 HOH A 33 233 40 HOH HOH . H 4 HOH A 34 234 43 HOH HOH . H 4 HOH A 35 235 49 HOH HOH . H 4 HOH A 36 236 60 HOH HOH . H 4 HOH A 37 237 73 HOH HOH . I 4 HOH B 1 201 55 HOH HOH . I 4 HOH B 2 202 63 HOH HOH . I 4 HOH B 3 203 7 HOH HOH . I 4 HOH B 4 204 41 HOH HOH . I 4 HOH B 5 205 68 HOH HOH . I 4 HOH B 6 206 56 HOH HOH . I 4 HOH B 7 207 33 HOH HOH . I 4 HOH B 8 208 35 HOH HOH . I 4 HOH B 9 209 1 HOH HOH . I 4 HOH B 10 210 30 HOH HOH . I 4 HOH B 11 211 44 HOH HOH . I 4 HOH B 12 212 21 HOH HOH . I 4 HOH B 13 213 46 HOH HOH . I 4 HOH B 14 214 70 HOH HOH . I 4 HOH B 15 215 11 HOH HOH . I 4 HOH B 16 216 67 HOH HOH . I 4 HOH B 17 217 75 HOH HOH . I 4 HOH B 18 218 76 HOH HOH . I 4 HOH B 19 219 38 HOH HOH . I 4 HOH B 20 220 2 HOH HOH . I 4 HOH B 21 221 6 HOH HOH . I 4 HOH B 22 222 8 HOH HOH . I 4 HOH B 23 223 10 HOH HOH . I 4 HOH B 24 224 16 HOH HOH . I 4 HOH B 25 225 17 HOH HOH . I 4 HOH B 26 226 19 HOH HOH . I 4 HOH B 27 227 20 HOH HOH . I 4 HOH B 28 228 22 HOH HOH . I 4 HOH B 29 229 27 HOH HOH . I 4 HOH B 30 230 31 HOH HOH . I 4 HOH B 31 231 34 HOH HOH . I 4 HOH B 32 232 39 HOH HOH . I 4 HOH B 33 233 51 HOH HOH . I 4 HOH B 34 234 52 HOH HOH . I 4 HOH B 35 235 62 HOH HOH . I 4 HOH B 36 236 65 HOH HOH . I 4 HOH B 37 237 69 HOH HOH . I 4 HOH B 38 238 71 HOH HOH . I 4 HOH B 39 239 74 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.114 _atom_site.Cartn_y -1.076 _atom_site.Cartn_z 25.508 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #