data_4PE1 # _model_server_result.job_id cl9i66a3O3a_h0JvDvLfmA _model_server_result.datetime_utc '2024-11-24 07:48:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pe1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4PE1 # _exptl.entry_id 4PE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIETHYLCARBAMODITHIOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.1 _cell.angle_gamma 90 _cell.entry_id 4PE1 _cell.length_a 34.649 _cell.length_b 56.463 _cell.length_c 48.269 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PE1 _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 84 1_555 C S1 DCD . A DCD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf2 B SG CYS 85 B CYS 84 1_555 F S1 DCD . B DCD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc1 A O SER 19 A SER 18 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc10 A O GLU 68 A GLU 67 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc13 D CA CA . A CA 102 1_555 I O HOH . A HOH 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc14 E CA CA . A CA 103 1_555 I O HOH . A HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc15 B O SER 19 B SER 18 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc16 B O GLU 22 B GLU 21 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc17 B O ASP 24 B ASP 23 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc18 B O LYS 27 B LYS 26 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc19 B OE1 GLU 32 B GLU 31 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc20 B OE2 GLU 32 B GLU 31 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc21 B OD1 ASP 62 B ASP 61 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc22 B OD1 ASP 64 B ASP 63 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc23 B OD1 ASP 66 B ASP 65 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc24 B O GLU 68 B GLU 67 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc25 B OE1 GLU 73 B GLU 72 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc26 B OE2 GLU 73 B GLU 72 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc27 G CA CA . B CA 102 1_555 J O HOH . B HOH 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc28 H CA CA . B CA 103 1_555 J O HOH . B HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'C5 H11 N S2' _chem_comp.formula_weight 149.278 _chem_comp.id DCD _chem_comp.mon_nstd_flag . _chem_comp.name 'DIETHYLCARBAMODITHIOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C3 DCD sing 83 n n C5 H5C1 DCD sing 84 n n C5 H5C2 DCD sing 85 n n C5 H5C3 DCD sing 86 n n C3 N1 DCD sing 87 n n C3 H3C1 DCD sing 88 n n C3 H3C2 DCD sing 89 n n N1 C1 DCD sing 90 n n N1 C2 DCD sing 91 n n C1 S2 DCD doub 92 n n C1 S1 DCD sing 93 n n S1 HS DCD sing 94 n n C2 C4 DCD sing 95 n n C2 H2C1 DCD sing 96 n n C2 H2C2 DCD sing 97 n n C4 H4C1 DCD sing 98 n n C4 H4C2 DCD sing 99 n n C4 H4C3 DCD sing 100 n n # _atom_sites.entry_id 4PE1 _atom_sites.fract_transf_matrix[1][1] 0.028861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010563 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DCD A 1 101 200 DCD DCD . D 3 CA A 1 102 1 CA CA . E 3 CA A 1 103 1 CA CA . F 2 DCD B 1 101 200 DCD DCD . G 3 CA B 1 102 1 CA CA . H 3 CA B 1 103 1 CA CA . I 4 HOH A 1 201 128 HOH HOH . I 4 HOH A 2 202 2 HOH HOH . I 4 HOH A 3 203 115 HOH HOH . I 4 HOH A 4 204 77 HOH HOH . I 4 HOH A 5 205 120 HOH HOH . I 4 HOH A 6 206 116 HOH HOH . I 4 HOH A 7 207 142 HOH HOH . I 4 HOH A 8 208 139 HOH HOH . I 4 HOH A 9 209 111 HOH HOH . I 4 HOH A 10 210 122 HOH HOH . I 4 HOH A 11 211 4 HOH HOH . I 4 HOH A 12 212 159 HOH HOH . I 4 HOH A 13 213 60 HOH HOH . I 4 HOH A 14 214 71 HOH HOH . I 4 HOH A 15 215 30 HOH HOH . I 4 HOH A 16 216 43 HOH HOH . I 4 HOH A 17 217 49 HOH HOH . I 4 HOH A 18 218 172 HOH HOH . I 4 HOH A 19 219 36 HOH HOH . I 4 HOH A 20 220 21 HOH HOH . I 4 HOH A 21 221 123 HOH HOH . I 4 HOH A 22 222 110 HOH HOH . I 4 HOH A 23 223 67 HOH HOH . I 4 HOH A 24 224 33 HOH HOH . I 4 HOH A 25 225 83 HOH HOH . I 4 HOH A 26 226 65 HOH HOH . I 4 HOH A 27 227 98 HOH HOH . I 4 HOH A 28 228 137 HOH HOH . I 4 HOH A 29 229 29 HOH HOH . I 4 HOH A 30 230 144 HOH HOH . I 4 HOH A 31 231 124 HOH HOH . I 4 HOH A 32 232 63 HOH HOH . I 4 HOH A 33 233 35 HOH HOH . I 4 HOH A 34 234 27 HOH HOH . I 4 HOH A 35 235 68 HOH HOH . I 4 HOH A 36 236 80 HOH HOH . I 4 HOH A 37 237 130 HOH HOH . I 4 HOH A 38 238 89 HOH HOH . I 4 HOH A 39 239 134 HOH HOH . I 4 HOH A 40 240 152 HOH HOH . I 4 HOH A 41 241 78 HOH HOH . I 4 HOH A 42 242 95 HOH HOH . I 4 HOH A 43 243 170 HOH HOH . I 4 HOH A 44 244 119 HOH HOH . I 4 HOH A 45 245 85 HOH HOH . I 4 HOH A 46 246 153 HOH HOH . I 4 HOH A 47 247 1 HOH HOH . I 4 HOH A 48 248 7 HOH HOH . I 4 HOH A 49 249 8 HOH HOH . I 4 HOH A 50 250 9 HOH HOH . I 4 HOH A 51 251 11 HOH HOH . I 4 HOH A 52 252 13 HOH HOH . I 4 HOH A 53 253 14 HOH HOH . I 4 HOH A 54 254 15 HOH HOH . I 4 HOH A 55 255 17 HOH HOH . I 4 HOH A 56 256 19 HOH HOH . I 4 HOH A 57 257 24 HOH HOH . I 4 HOH A 58 258 26 HOH HOH . I 4 HOH A 59 259 31 HOH HOH . I 4 HOH A 60 260 37 HOH HOH . I 4 HOH A 61 261 40 HOH HOH . I 4 HOH A 62 262 47 HOH HOH . I 4 HOH A 63 263 48 HOH HOH . I 4 HOH A 64 264 52 HOH HOH . I 4 HOH A 65 265 56 HOH HOH . I 4 HOH A 66 266 58 HOH HOH . I 4 HOH A 67 267 59 HOH HOH . I 4 HOH A 68 268 61 HOH HOH . I 4 HOH A 69 269 72 HOH HOH . I 4 HOH A 70 270 74 HOH HOH . I 4 HOH A 71 271 75 HOH HOH . I 4 HOH A 72 272 82 HOH HOH . I 4 HOH A 73 273 91 HOH HOH . I 4 HOH A 74 274 101 HOH HOH . I 4 HOH A 75 275 103 HOH HOH . I 4 HOH A 76 276 104 HOH HOH . I 4 HOH A 77 277 107 HOH HOH . I 4 HOH A 78 278 112 HOH HOH . I 4 HOH A 79 279 114 HOH HOH . I 4 HOH A 80 280 117 HOH HOH . I 4 HOH A 81 281 121 HOH HOH . I 4 HOH A 82 282 126 HOH HOH . I 4 HOH A 83 283 129 HOH HOH . I 4 HOH A 84 284 138 HOH HOH . I 4 HOH A 85 285 150 HOH HOH . I 4 HOH A 86 286 157 HOH HOH . I 4 HOH A 87 287 161 HOH HOH . I 4 HOH A 88 288 163 HOH HOH . I 4 HOH A 89 289 166 HOH HOH . I 4 HOH A 90 290 169 HOH HOH . J 4 HOH B 1 201 105 HOH HOH . J 4 HOH B 2 202 109 HOH HOH . J 4 HOH B 3 203 155 HOH HOH . J 4 HOH B 4 204 69 HOH HOH . J 4 HOH B 5 205 145 HOH HOH . J 4 HOH B 6 206 42 HOH HOH . J 4 HOH B 7 207 160 HOH HOH . J 4 HOH B 8 208 88 HOH HOH . J 4 HOH B 9 209 16 HOH HOH . J 4 HOH B 10 210 28 HOH HOH . J 4 HOH B 11 211 127 HOH HOH . J 4 HOH B 12 212 86 HOH HOH . J 4 HOH B 13 213 12 HOH HOH . J 4 HOH B 14 214 51 HOH HOH . J 4 HOH B 15 215 102 HOH HOH . J 4 HOH B 16 216 66 HOH HOH . J 4 HOH B 17 217 162 HOH HOH . J 4 HOH B 18 218 135 HOH HOH . J 4 HOH B 19 219 55 HOH HOH . J 4 HOH B 20 220 136 HOH HOH . J 4 HOH B 21 221 90 HOH HOH . J 4 HOH B 22 222 64 HOH HOH . J 4 HOH B 23 223 97 HOH HOH . J 4 HOH B 24 224 154 HOH HOH . J 4 HOH B 25 225 171 HOH HOH . J 4 HOH B 26 226 32 HOH HOH . J 4 HOH B 27 227 50 HOH HOH . J 4 HOH B 28 228 125 HOH HOH . J 4 HOH B 29 229 38 HOH HOH . J 4 HOH B 30 230 173 HOH HOH . J 4 HOH B 31 231 141 HOH HOH . J 4 HOH B 32 232 20 HOH HOH . J 4 HOH B 33 233 41 HOH HOH . J 4 HOH B 34 234 143 HOH HOH . J 4 HOH B 35 235 146 HOH HOH . J 4 HOH B 36 236 54 HOH HOH . J 4 HOH B 37 237 165 HOH HOH . J 4 HOH B 38 238 158 HOH HOH . J 4 HOH B 39 239 131 HOH HOH . J 4 HOH B 40 240 118 HOH HOH . J 4 HOH B 41 241 99 HOH HOH . J 4 HOH B 42 242 94 HOH HOH . J 4 HOH B 43 243 62 HOH HOH . J 4 HOH B 44 244 92 HOH HOH . J 4 HOH B 45 245 147 HOH HOH . J 4 HOH B 46 246 167 HOH HOH . J 4 HOH B 47 247 100 HOH HOH . J 4 HOH B 48 248 148 HOH HOH . J 4 HOH B 49 249 3 HOH HOH . J 4 HOH B 50 250 5 HOH HOH . J 4 HOH B 51 251 6 HOH HOH . J 4 HOH B 52 252 10 HOH HOH . J 4 HOH B 53 253 18 HOH HOH . J 4 HOH B 54 254 22 HOH HOH . J 4 HOH B 55 255 23 HOH HOH . J 4 HOH B 56 256 25 HOH HOH . J 4 HOH B 57 257 34 HOH HOH . J 4 HOH B 58 258 39 HOH HOH . J 4 HOH B 59 259 44 HOH HOH . J 4 HOH B 60 260 45 HOH HOH . J 4 HOH B 61 261 46 HOH HOH . J 4 HOH B 62 262 53 HOH HOH . J 4 HOH B 63 263 57 HOH HOH . J 4 HOH B 64 264 70 HOH HOH . J 4 HOH B 65 265 73 HOH HOH . J 4 HOH B 66 266 76 HOH HOH . J 4 HOH B 67 267 79 HOH HOH . J 4 HOH B 68 268 81 HOH HOH . J 4 HOH B 69 269 84 HOH HOH . J 4 HOH B 70 270 87 HOH HOH . J 4 HOH B 71 271 93 HOH HOH . J 4 HOH B 72 272 96 HOH HOH . J 4 HOH B 73 273 106 HOH HOH . J 4 HOH B 74 274 108 HOH HOH . J 4 HOH B 75 275 113 HOH HOH . J 4 HOH B 76 276 132 HOH HOH . J 4 HOH B 77 277 133 HOH HOH . J 4 HOH B 78 278 140 HOH HOH . J 4 HOH B 79 279 149 HOH HOH . J 4 HOH B 80 280 151 HOH HOH . J 4 HOH B 81 281 156 HOH HOH . J 4 HOH B 82 282 164 HOH HOH . J 4 HOH B 83 283 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 DCD . . . C 2 25.901 -3.754 50.857 1 54.98 ? C5 DCD 101 A 1 HETATM 2 C C3 DCD . . . C 2 24.834 -2.881 50.228 1 57.23 ? C3 DCD 101 A 1 HETATM 3 N N1 DCD . . . C 2 23.748 -3.708 49.711 1 59 ? N1 DCD 101 A 1 HETATM 4 C C1 DCD . . . C 2 22.742 -2.887 49.108 1 51.54 ? C1 DCD 101 A 1 HETATM 5 S S2 DCD . . . C 2 21.154 -3.132 49.543 1 70.1 ? S2 DCD 101 A 1 HETATM 6 S S1 DCD . . . C 2 23.063 -2.108 47.535 1 52.79 ? S1 DCD 101 A 1 HETATM 7 C C2 DCD . . . C 2 23.152 -4.463 50.843 1 56.15 ? C2 DCD 101 A 1 HETATM 8 C C4 DCD . . . C 2 23.136 -5.918 50.53 1 57.27 ? C4 DCD 101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #