data_4PE4 # _model_server_result.job_id z4gcGviryCA4arQgZC6AgA _model_server_result.datetime_utc '2024-11-24 06:56:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pe4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4PE4 # _exptl.entry_id 4PE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.338 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-dimethoxy-5-[(1S)-1-phenylpropyl]benzene-1,4-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.23 _cell.angle_gamma 90 _cell.entry_id 4PE4 _cell.length_a 35.015 _cell.length_b 58.087 _cell.length_c 47.891 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PE4 _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 85 X CYS 84 1_555 C C03 REV . X REV 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? covale ? covale2 B SG CYS 85 A CYS 84 1_555 F C03 REV . A REV 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc1 A O SER 19 X SER 18 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc2 A O GLU 22 X GLU 21 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc3 A O ASP 24 X ASP 23 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 A O LYS 27 X LYS 26 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 A OE1 GLU 32 X GLU 31 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc6 A OE2 GLU 32 X GLU 31 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 A OD1 ASP 62 X ASP 61 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 A OD1 ASP 64 X ASP 63 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc9 A OD1 ASP 66 X ASP 65 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc10 A O GLU 68 X GLU 67 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc11 A OE1 GLU 73 X GLU 72 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc12 A OE2 GLU 73 X GLU 72 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc13 D CA CA . X CA 102 1_555 I O HOH . X HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc14 E CA CA . X CA 103 1_555 I O HOH . X HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc15 B O SER 19 A SER 18 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc16 B O GLU 22 A GLU 21 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc17 B O ASP 24 A ASP 23 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc18 B O LYS 27 A LYS 26 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc19 B OE1 GLU 32 A GLU 31 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc20 B OE2 GLU 32 A GLU 31 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc21 B OD1 ASP 62 A ASP 61 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc22 B OD1 ASP 64 A ASP 63 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc23 B OD1 ASP 66 A ASP 65 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc24 B O GLU 68 A GLU 67 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc25 B OE1 GLU 73 A GLU 72 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc26 B OE2 GLU 73 A GLU 72 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc27 G CA CA . A CA 102 1_555 J O HOH . A HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc28 H CA CA . A CA 103 1_555 J O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C17 H20 O4' _chem_comp.formula_weight 288.338 _chem_comp.id REV _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-dimethoxy-5-[(1S)-1-phenylpropyl]benzene-1,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 C02 REV sing 260 n n O15 C16 REV sing 261 n n O15 C01 REV sing 262 n n C02 C01 REV doub 263 n y C02 C03 REV sing 264 n y C01 C06 REV sing 265 n y C03 C04 REV doub 266 n y C14 O13 REV sing 267 n n C06 O13 REV sing 268 n n C06 C05 REV doub 269 n y C21 C20 REV sing 270 n n C04 C05 REV sing 271 n y C04 C19 REV sing 272 n n C20 C19 REV sing 273 n n C05 O18 REV sing 274 n n C09 C10 REV doub 275 n y C09 C08 REV sing 276 n y C19 C08 REV sing 277 n n C10 C11 REV sing 278 n y C08 C07 REV doub 279 n y C11 C12 REV doub 280 n y C07 C12 REV sing 281 n y C03 H1 REV sing 282 n n C07 H2 REV sing 283 n n C09 H3 REV sing 284 n n C10 H4 REV sing 285 n n C11 H5 REV sing 286 n n C12 H6 REV sing 287 n n C14 H7 REV sing 288 n n C14 H8 REV sing 289 n n C14 H9 REV sing 290 n n C16 H10 REV sing 291 n n C16 H11 REV sing 292 n n C16 H12 REV sing 293 n n O17 H13 REV sing 294 n n O18 H14 REV sing 295 n n C19 H15 REV sing 296 n n C20 H16 REV sing 297 n n C20 H17 REV sing 298 n n C21 H18 REV sing 299 n n C21 H19 REV sing 300 n n C21 H20 REV sing 301 n n # _atom_sites.entry_id 4PE4 _atom_sites.fract_transf_matrix[1][1] 0.028559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011092 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 REV X 1 101 200 REV REV . D 3 CA X 1 102 1 CA CA . E 3 CA X 1 103 1 CA CA . F 2 REV A 1 101 200 REV REV . G 3 CA A 1 102 1 CA CA . H 3 CA A 1 103 1 CA CA . I 4 HOH X 1 201 13 HOH HOH . I 4 HOH X 2 202 2 HOH HOH . I 4 HOH X 3 203 4 HOH HOH . I 4 HOH X 4 204 5 HOH HOH . I 4 HOH X 5 205 6 HOH HOH . I 4 HOH X 6 206 7 HOH HOH . I 4 HOH X 7 207 9 HOH HOH . I 4 HOH X 8 208 10 HOH HOH . I 4 HOH X 9 209 15 HOH HOH . I 4 HOH X 10 210 16 HOH HOH . I 4 HOH X 11 211 17 HOH HOH . J 4 HOH A 1 201 14 HOH HOH . J 4 HOH A 2 202 12 HOH HOH . J 4 HOH A 3 203 1 HOH HOH . J 4 HOH A 4 204 8 HOH HOH . J 4 HOH A 5 205 11 HOH HOH . J 4 HOH A 6 206 18 HOH HOH . J 4 HOH A 7 207 3 HOH HOH . J 4 HOH A 8 208 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 REV . . . C 2 28.173 23.503 20.591 1 83.97 ? C01 REV 101 X 1 HETATM 2 C C02 REV . . . C 2 29.428 22.857 20.45 1 80.19 ? C02 REV 101 X 1 HETATM 3 C C03 REV . . . C 2 30.408 23.321 19.568 1 76.48 ? C03 REV 101 X 1 HETATM 4 C C04 REV . . . C 2 30.085 24.465 18.791 1 72.31 ? C04 REV 101 X 1 HETATM 5 C C05 REV . . . C 2 28.797 25.089 18.939 1 83.7 ? C05 REV 101 X 1 HETATM 6 C C06 REV . . . C 2 27.861 24.609 19.836 1 87.96 ? C06 REV 101 X 1 HETATM 7 C C07 REV . . . C 2 32.53 23.27 16.968 1 72.94 ? C07 REV 101 X 1 HETATM 8 C C08 REV . . . C 2 32.377 24.487 17.599 1 80.21 ? C08 REV 101 X 1 HETATM 9 C C09 REV . . . C 2 33.487 25.195 18.047 1 80.14 ? C09 REV 101 X 1 HETATM 10 C C10 REV . . . C 2 34.734 24.678 17.883 1 80.37 ? C10 REV 101 X 1 HETATM 11 C C11 REV . . . C 2 34.888 23.453 17.257 1 79.55 ? C11 REV 101 X 1 HETATM 12 C C12 REV . . . C 2 33.778 22.748 16.796 1 66.59 ? C12 REV 101 X 1 HETATM 13 O O13 REV . . . C 2 26.611 25.253 19.965 1 91.73 ? O13 REV 101 X 1 HETATM 14 C C14 REV . . . C 2 26.253 25.822 21.17 1 86.93 ? C14 REV 101 X 1 HETATM 15 O O15 REV . . . C 2 27.253 22.975 21.513 1 94.26 ? O15 REV 101 X 1 HETATM 16 C C16 REV . . . C 2 26.019 22.611 21.027 1 95.64 ? C16 REV 101 X 1 HETATM 17 O O17 REV . . . C 2 29.619 21.747 21.267 1 80.99 ? O17 REV 101 X 1 HETATM 18 O O18 REV . . . C 2 28.454 26.205 18.204 1 93.7 ? O18 REV 101 X 1 HETATM 19 C C19 REV . . . C 2 30.986 25.109 17.791 1 78.78 ? C19 REV 101 X 1 HETATM 20 C C20 REV . . . C 2 31.156 26.613 17.925 1 82.81 ? C20 REV 101 X 1 HETATM 21 C C21 REV . . . C 2 30.935 27.31 19.22 1 75.79 ? C21 REV 101 X 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 21 #