data_4PE4 # _model_server_result.job_id UZTJOxJLDS5seJF56INSpg _model_server_result.datetime_utc '2024-10-15 10:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pe4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 4PE4 # _exptl.entry_id 4PE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.23 _cell.angle_gamma 90 _cell.entry_id 4PE4 _cell.length_a 35.015 _cell.length_b 58.087 _cell.length_c 47.891 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PE4 _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 85 X CYS 84 1_555 C C03 REV . X REV 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? covale ? covale2 B SG CYS 85 A CYS 84 1_555 F C03 REV . A REV 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc1 A O SER 19 X SER 18 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc2 A O GLU 22 X GLU 21 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc3 A O ASP 24 X ASP 23 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 A O LYS 27 X LYS 26 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 A OE1 GLU 32 X GLU 31 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc6 A OE2 GLU 32 X GLU 31 1_555 D CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 A OD1 ASP 62 X ASP 61 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 A OD1 ASP 64 X ASP 63 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc9 A OD1 ASP 66 X ASP 65 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc10 A O GLU 68 X GLU 67 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc11 A OE1 GLU 73 X GLU 72 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc12 A OE2 GLU 73 X GLU 72 1_555 E CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc13 D CA CA . X CA 102 1_555 I O HOH . X HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc14 E CA CA . X CA 103 1_555 I O HOH . X HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc15 B O SER 19 A SER 18 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc16 B O GLU 22 A GLU 21 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc17 B O ASP 24 A ASP 23 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc18 B O LYS 27 A LYS 26 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc19 B OE1 GLU 32 A GLU 31 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc20 B OE2 GLU 32 A GLU 31 1_555 H CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc21 B OD1 ASP 62 A ASP 61 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc22 B OD1 ASP 64 A ASP 63 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc23 B OD1 ASP 66 A ASP 65 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc24 B O GLU 68 A GLU 67 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc25 B OE1 GLU 73 A GLU 72 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc26 B OE2 GLU 73 A GLU 72 1_555 G CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc27 G CA CA . A CA 102 1_555 J O HOH . A HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc28 H CA CA . A CA 103 1_555 J O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PE4 _atom_sites.fract_transf_matrix[1][1] 0.028559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011092 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 REV X 1 101 200 REV REV . D 3 CA X 1 102 1 CA CA . E 3 CA X 1 103 1 CA CA . F 2 REV A 1 101 200 REV REV . G 3 CA A 1 102 1 CA CA . H 3 CA A 1 103 1 CA CA . I 4 HOH X 1 201 13 HOH HOH . I 4 HOH X 2 202 2 HOH HOH . I 4 HOH X 3 203 4 HOH HOH . I 4 HOH X 4 204 5 HOH HOH . I 4 HOH X 5 205 6 HOH HOH . I 4 HOH X 6 206 7 HOH HOH . I 4 HOH X 7 207 9 HOH HOH . I 4 HOH X 8 208 10 HOH HOH . I 4 HOH X 9 209 15 HOH HOH . I 4 HOH X 10 210 16 HOH HOH . I 4 HOH X 11 211 17 HOH HOH . J 4 HOH A 1 201 14 HOH HOH . J 4 HOH A 2 202 12 HOH HOH . J 4 HOH A 3 203 1 HOH HOH . J 4 HOH A 4 204 8 HOH HOH . J 4 HOH A 5 205 11 HOH HOH . J 4 HOH A 6 206 18 HOH HOH . J 4 HOH A 7 207 3 HOH HOH . J 4 HOH A 8 208 19 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 34.884 _atom_site.Cartn_y 1.46 _atom_site.Cartn_z 7.244 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 65 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #