data_4PE7 # _model_server_result.job_id 3mO0qlsGt4YPffurFq1P-Q _model_server_result.datetime_utc '2024-10-15 10:25:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pe7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 4PE7 # _exptl.entry_id 4PE7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PE7 _cell.length_a 34.638 _cell.length_b 90.018 _cell.length_c 60.796 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PE7 _symmetry.cell_setting . _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 85 A CYS 84 1_555 B C14 ODN . A ODN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc1 A O SER 19 A SER 18 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc9 A OD2 ASP 64 A ASP 63 1_555 E CA CA . A CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc10 A OD1 ASP 66 A ASP 65 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc11 A O GLU 68 A GLU 67 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc12 A OD2 ASP 70 A ASP 69 1_555 E CA CA . A CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc13 A OE1 GLU 73 A GLU 72 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc14 A OE2 GLU 73 A GLU 72 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc15 C CA CA . A CA 102 1_555 F O HOH . A HOH 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc16 D CA CA . A CA 103 1_555 F O HOH . A HOH 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc17 E CA CA . A CA 104 1_555 F O HOH . A HOH 208 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc18 E CA CA . A CA 104 1_555 F O HOH . A HOH 214 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc19 E CA CA . A CA 104 1_555 F O HOH . A HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc20 E CA CA . A CA 104 1_555 F O HOH . A HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc21 E CA CA . A CA 104 1_555 F O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc22 E CA CA . A CA 104 1_555 F O HOH . A HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PE7 _atom_sites.fract_transf_matrix[1][1] 0.02887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ODN A 1 101 200 ODN ODN . C 3 CA A 1 102 1 CA CA . D 3 CA A 1 103 1 CA CA . E 3 CA A 1 104 1 CA CA . F 4 HOH A 1 201 130 HOH HOH . F 4 HOH A 2 202 110 HOH HOH . F 4 HOH A 3 203 133 HOH HOH . F 4 HOH A 4 204 98 HOH HOH . F 4 HOH A 5 205 74 HOH HOH . F 4 HOH A 6 206 95 HOH HOH . F 4 HOH A 7 207 91 HOH HOH . F 4 HOH A 8 208 65 HOH HOH . F 4 HOH A 9 209 47 HOH HOH . F 4 HOH A 10 210 105 HOH HOH . F 4 HOH A 11 211 2 HOH HOH . F 4 HOH A 12 212 118 HOH HOH . F 4 HOH A 13 213 129 HOH HOH . F 4 HOH A 14 214 73 HOH HOH . F 4 HOH A 15 215 48 HOH HOH . F 4 HOH A 16 216 135 HOH HOH . F 4 HOH A 17 217 24 HOH HOH . F 4 HOH A 18 218 32 HOH HOH . F 4 HOH A 19 219 23 HOH HOH . F 4 HOH A 20 220 101 HOH HOH . F 4 HOH A 21 221 27 HOH HOH . F 4 HOH A 22 222 12 HOH HOH . F 4 HOH A 23 223 7 HOH HOH . F 4 HOH A 24 224 16 HOH HOH . F 4 HOH A 25 225 112 HOH HOH . F 4 HOH A 26 226 6 HOH HOH . F 4 HOH A 27 227 87 HOH HOH . F 4 HOH A 28 228 66 HOH HOH . F 4 HOH A 29 229 29 HOH HOH . F 4 HOH A 30 230 69 HOH HOH . F 4 HOH A 31 231 35 HOH HOH . F 4 HOH A 32 232 120 HOH HOH . F 4 HOH A 33 233 17 HOH HOH . F 4 HOH A 34 234 13 HOH HOH . F 4 HOH A 35 235 5 HOH HOH . F 4 HOH A 36 236 108 HOH HOH . F 4 HOH A 37 237 99 HOH HOH . F 4 HOH A 38 238 54 HOH HOH . F 4 HOH A 39 239 51 HOH HOH . F 4 HOH A 40 240 55 HOH HOH . F 4 HOH A 41 241 39 HOH HOH . F 4 HOH A 42 242 21 HOH HOH . F 4 HOH A 43 243 33 HOH HOH . F 4 HOH A 44 244 38 HOH HOH . F 4 HOH A 45 245 25 HOH HOH . F 4 HOH A 46 246 114 HOH HOH . F 4 HOH A 47 247 76 HOH HOH . F 4 HOH A 48 248 53 HOH HOH . F 4 HOH A 49 249 28 HOH HOH . F 4 HOH A 50 250 113 HOH HOH . F 4 HOH A 51 251 123 HOH HOH . F 4 HOH A 52 252 77 HOH HOH . F 4 HOH A 53 253 78 HOH HOH . F 4 HOH A 54 254 63 HOH HOH . F 4 HOH A 55 255 45 HOH HOH . F 4 HOH A 56 256 72 HOH HOH . F 4 HOH A 57 257 67 HOH HOH . F 4 HOH A 58 258 94 HOH HOH . F 4 HOH A 59 259 111 HOH HOH . F 4 HOH A 60 260 89 HOH HOH . F 4 HOH A 61 261 134 HOH HOH . F 4 HOH A 62 262 70 HOH HOH . F 4 HOH A 63 263 19 HOH HOH . F 4 HOH A 64 264 22 HOH HOH . F 4 HOH A 65 265 88 HOH HOH . F 4 HOH A 66 266 60 HOH HOH . F 4 HOH A 67 267 90 HOH HOH . F 4 HOH A 68 268 68 HOH HOH . F 4 HOH A 69 269 115 HOH HOH . F 4 HOH A 70 270 71 HOH HOH . F 4 HOH A 71 271 30 HOH HOH . F 4 HOH A 72 272 61 HOH HOH . F 4 HOH A 73 273 36 HOH HOH . F 4 HOH A 74 274 122 HOH HOH . F 4 HOH A 75 275 49 HOH HOH . F 4 HOH A 76 276 52 HOH HOH . F 4 HOH A 77 277 50 HOH HOH . F 4 HOH A 78 278 41 HOH HOH . F 4 HOH A 79 279 79 HOH HOH . F 4 HOH A 80 280 44 HOH HOH . F 4 HOH A 81 281 97 HOH HOH . F 4 HOH A 82 282 102 HOH HOH . F 4 HOH A 83 283 136 HOH HOH . F 4 HOH A 84 284 109 HOH HOH . F 4 HOH A 85 285 81 HOH HOH . F 4 HOH A 86 286 59 HOH HOH . F 4 HOH A 87 287 82 HOH HOH . F 4 HOH A 88 288 56 HOH HOH . F 4 HOH A 89 289 125 HOH HOH . F 4 HOH A 90 290 57 HOH HOH . F 4 HOH A 91 291 34 HOH HOH . F 4 HOH A 92 292 117 HOH HOH . F 4 HOH A 93 293 137 HOH HOH . F 4 HOH A 94 294 116 HOH HOH . F 4 HOH A 95 295 121 HOH HOH . F 4 HOH A 96 296 1 HOH HOH . F 4 HOH A 97 297 3 HOH HOH . F 4 HOH A 98 298 4 HOH HOH . F 4 HOH A 99 299 8 HOH HOH . F 4 HOH A 100 300 9 HOH HOH . F 4 HOH A 101 301 10 HOH HOH . F 4 HOH A 102 302 11 HOH HOH . F 4 HOH A 103 303 14 HOH HOH . F 4 HOH A 104 304 15 HOH HOH . F 4 HOH A 105 305 18 HOH HOH . F 4 HOH A 106 306 20 HOH HOH . F 4 HOH A 107 307 26 HOH HOH . F 4 HOH A 108 308 31 HOH HOH . F 4 HOH A 109 309 37 HOH HOH . F 4 HOH A 110 310 40 HOH HOH . F 4 HOH A 111 311 42 HOH HOH . F 4 HOH A 112 312 43 HOH HOH . F 4 HOH A 113 313 46 HOH HOH . F 4 HOH A 114 314 58 HOH HOH . F 4 HOH A 115 315 62 HOH HOH . F 4 HOH A 116 316 64 HOH HOH . F 4 HOH A 117 317 75 HOH HOH . F 4 HOH A 118 318 80 HOH HOH . F 4 HOH A 119 319 83 HOH HOH . F 4 HOH A 120 320 84 HOH HOH . F 4 HOH A 121 321 85 HOH HOH . F 4 HOH A 122 322 86 HOH HOH . F 4 HOH A 123 323 92 HOH HOH . F 4 HOH A 124 324 93 HOH HOH . F 4 HOH A 125 325 96 HOH HOH . F 4 HOH A 126 326 100 HOH HOH . F 4 HOH A 127 327 103 HOH HOH . F 4 HOH A 128 328 104 HOH HOH . F 4 HOH A 129 329 106 HOH HOH . F 4 HOH A 130 330 107 HOH HOH . F 4 HOH A 131 331 119 HOH HOH . F 4 HOH A 132 332 124 HOH HOH . F 4 HOH A 133 333 126 HOH HOH . F 4 HOH A 134 334 127 HOH HOH . F 4 HOH A 135 335 128 HOH HOH . F 4 HOH A 136 336 131 HOH HOH . F 4 HOH A 137 337 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -20.736 _atom_site.Cartn_y -7.907 _atom_site.Cartn_z -8.889 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 104 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #