data_4PFA # _model_server_result.job_id JHVAxgERn7FKJmD8HZM6Ng _model_server_result.datetime_utc '2024-10-19 16:39:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4PFA # _exptl.entry_id 4PFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.77 _cell.angle_gamma 90 _cell.entry_id 4PFA _cell.length_a 72.856 _cell.length_b 82.013 _cell.length_c 81.148 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 406 A CYS 387 1_555 D N3 N77 . A N77 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale2 B SG CYS 406 B CYS 387 1_555 F N3 N77 . B N77 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 4PFA _atom_sites.fract_transf_matrix[1][1] 0.013726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002611 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 N77 A 1 502 550 N77 N77 . E 2 FAD B 1 501 501 FAD FAD . F 3 N77 B 1 502 550 N77 N77 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 42.143 -22.34 43.461 1 53.68 ? PA FAD 501 B 1 HETATM 2 O O1A FAD . . . E 2 43.283 -23.326 43.362 1 53.64 ? O1A FAD 501 B 1 HETATM 3 O O2A FAD . . . E 2 40.736 -22.862 43.615 1 54.1 ? O2A FAD 501 B 1 HETATM 4 O O5B FAD . . . E 2 42.433 -21.321 44.675 1 53.51 ? O5B FAD 501 B 1 HETATM 5 C C5B FAD . . . E 2 43.721 -20.731 44.848 1 54.66 ? C5B FAD 501 B 1 HETATM 6 C C4B FAD . . . E 2 43.62 -19.451 45.669 1 55.47 ? C4B FAD 501 B 1 HETATM 7 O O4B FAD . . . E 2 42.849 -18.488 44.953 1 55.61 ? O4B FAD 501 B 1 HETATM 8 C C3B FAD . . . E 2 42.931 -19.678 47.006 1 56.58 ? C3B FAD 501 B 1 HETATM 9 O O3B FAD . . . E 2 43.74 -19.13 48.051 1 57.31 ? O3B FAD 501 B 1 HETATM 10 C C2B FAD . . . E 2 41.61 -18.938 46.915 1 56.97 ? C2B FAD 501 B 1 HETATM 11 O O2B FAD . . . E 2 41.287 -18.276 48.142 1 58 ? O2B FAD 501 B 1 HETATM 12 C C1B FAD . . . E 2 41.837 -17.934 45.798 1 56.3 ? C1B FAD 501 B 1 HETATM 13 N N9A FAD . . . E 2 40.611 -17.644 45.009 1 56.18 ? N9A FAD 501 B 1 HETATM 14 C C8A FAD . . . E 2 40.017 -18.462 44.119 1 56.27 ? C8A FAD 501 B 1 HETATM 15 N N7A FAD . . . E 2 38.921 -17.875 43.572 1 56.4 ? N7A FAD 501 B 1 HETATM 16 C C5A FAD . . . E 2 38.806 -16.648 44.112 1 56.31 ? C5A FAD 501 B 1 HETATM 17 C C6A FAD . . . E 2 37.877 -15.495 43.984 1 56.22 ? C6A FAD 501 B 1 HETATM 18 N N6A FAD . . . E 2 36.817 -15.534 43.141 1 57.68 ? N6A FAD 501 B 1 HETATM 19 N N1A FAD . . . E 2 38.12 -14.398 44.737 1 56 ? N1A FAD 501 B 1 HETATM 20 C C2A FAD . . . E 2 39.166 -14.334 45.583 1 56.16 ? C2A FAD 501 B 1 HETATM 21 N N3A FAD . . . E 2 40.047 -15.337 45.746 1 56.83 ? N3A FAD 501 B 1 HETATM 22 C C4A FAD . . . E 2 39.925 -16.501 45.056 1 56.44 ? C4A FAD 501 B 1 HETATM 23 N N1 FAD . . . E 2 50.966 -21.184 38.335 1 52.71 ? N1 FAD 501 B 1 HETATM 24 C C2 FAD . . . E 2 51.832 -20.302 37.767 1 53.22 ? C2 FAD 501 B 1 HETATM 25 O O2 FAD . . . E 2 51.956 -19.167 38.274 1 52.63 ? O2 FAD 501 B 1 HETATM 26 N N3 FAD . . . E 2 52.562 -20.604 36.677 1 53.64 ? N3 FAD 501 B 1 HETATM 27 C C4 FAD . . . E 2 52.485 -21.802 36.077 1 53.65 ? C4 FAD 501 B 1 HETATM 28 O O4 FAD . . . E 2 53.174 -22.056 35.065 1 55.2 ? O4 FAD 501 B 1 HETATM 29 C C4X FAD . . . E 2 51.562 -22.82 36.636 1 53.01 ? C4X FAD 501 B 1 HETATM 30 N N5 FAD . . . E 2 51.431 -24.045 36.082 1 53.03 ? N5 FAD 501 B 1 HETATM 31 C C5X FAD . . . E 2 50.584 -24.96 36.602 1 53.12 ? C5X FAD 501 B 1 HETATM 32 C C6 FAD . . . E 2 50.483 -26.211 35.996 1 53.65 ? C6 FAD 501 B 1 HETATM 33 C C7 FAD . . . E 2 49.619 -27.176 36.508 1 53.88 ? C7 FAD 501 B 1 HETATM 34 C C7M FAD . . . E 2 49.535 -28.52 35.824 1 53.17 ? C7M FAD 501 B 1 HETATM 35 C C8 FAD . . . E 2 48.798 -26.86 37.718 1 54.2 ? C8 FAD 501 B 1 HETATM 36 C C8M FAD . . . E 2 47.849 -27.874 38.299 1 54.97 ? C8M FAD 501 B 1 HETATM 37 C C9 FAD . . . E 2 48.897 -25.606 38.323 1 54.1 ? C9 FAD 501 B 1 HETATM 38 C C9A FAD . . . E 2 49.763 -24.638 37.812 1 53.04 ? C9A FAD 501 B 1 HETATM 39 N N10 FAD . . . E 2 49.877 -23.357 38.408 1 52.64 ? N10 FAD 501 B 1 HETATM 40 C C10 FAD . . . E 2 50.784 -22.431 37.837 1 52.76 ? C10 FAD 501 B 1 HETATM 41 C C1' FAD . . . E 2 49.095 -23 39.604 1 52.86 ? C1' FAD 501 B 1 HETATM 42 C C2' FAD . . . E 2 47.864 -22.141 39.295 1 52.24 ? C2' FAD 501 B 1 HETATM 43 O O2' FAD . . . E 2 48.21 -21.061 38.418 1 51.67 ? O2' FAD 501 B 1 HETATM 44 C C3' FAD . . . E 2 47.267 -21.565 40.58 1 51.13 ? C3' FAD 501 B 1 HETATM 45 O O3' FAD . . . E 2 47.059 -22.628 41.52 1 51.32 ? O3' FAD 501 B 1 HETATM 46 C C4' FAD . . . E 2 45.951 -20.821 40.345 1 50.29 ? C4' FAD 501 B 1 HETATM 47 O O4' FAD . . . E 2 45.727 -19.889 41.407 1 48.39 ? O4' FAD 501 B 1 HETATM 48 C C5' FAD . . . E 2 44.776 -21.789 40.285 1 51.14 ? C5' FAD 501 B 1 HETATM 49 O O5' FAD . . . E 2 43.542 -21.09 40.135 1 50.68 ? O5' FAD 501 B 1 HETATM 50 P P FAD . . . E 2 42.193 -21.788 40.669 1 51.04 ? P FAD 501 B 1 HETATM 51 O O1P FAD . . . E 2 41.034 -21.114 39.974 1 49.59 ? O1P FAD 501 B 1 HETATM 52 O O2P FAD . . . E 2 42.356 -23.294 40.605 1 48.99 ? O2P FAD 501 B 1 HETATM 53 O O3P FAD . . . E 2 42.188 -21.321 42.211 1 52.4 ? O3P FAD 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #