data_4PFB # _model_server_result.job_id NPoguvMdT6xhOH5doFRcpw _model_server_result.datetime_utc '2024-10-28 02:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4PFB # _exptl.entry_id 4PFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PFB _cell.length_a 113.574 _cell.length_b 113.574 _cell.length_c 79.937 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PFB _symmetry.cell_setting . _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 36 A ASP 35 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc2 A OD1 ASP 37 A ASP 36 1_555 B ZN ZN . A ZN 401 6_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 A OE1 GLU 49 A GLU 48 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 A OE2 GLU 49 A GLU 48 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 A OE1 GLU 114 A GLU 113 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 A OE2 GLU 114 A GLU 113 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc7 A OE2 GLU 258 A GLU 257 1_555 C ZN ZN . A ZN 402 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc8 A ND1 HIS 290 A HIS 289 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc9 A OD1 ASP 306 A ASP 305 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc10 A OD2 ASP 306 A ASP 305 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc11 A OD2 ASP 317 A ASP 316 1_555 D ZN ZN . A ZN 403 8_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc12 B ZN ZN . A ZN 401 1_555 F N3 IMD . A IMD 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc13 B ZN ZN . A ZN 401 1_555 G N3 IMD . A IMD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc14 D ZN ZN . A ZN 403 1_555 J O HOH . A HOH 507 8_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PFB _atom_sites.fract_transf_matrix[1][1] 0.008805 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 2 ZN A 1 402 2 ZN ZN . D 2 ZN A 1 403 3 ZN ZN . E 2 ZN A 1 404 4 ZN ZN . F 3 IMD A 1 405 1 IMD IMD . G 3 IMD A 1 406 2 IMD IMD . H 4 G3P A 1 407 1 G3P G3P . I 2 ZN A 1 408 1 ZN ZN . J 5 HOH A 1 501 15 HOH HOH . J 5 HOH A 2 502 1 HOH HOH . J 5 HOH A 3 503 66 HOH HOH . J 5 HOH A 4 504 12 HOH HOH . J 5 HOH A 5 505 54 HOH HOH . J 5 HOH A 6 506 42 HOH HOH . J 5 HOH A 7 507 103 HOH HOH . J 5 HOH A 8 508 38 HOH HOH . J 5 HOH A 9 509 34 HOH HOH . J 5 HOH A 10 510 97 HOH HOH . J 5 HOH A 11 511 64 HOH HOH . J 5 HOH A 12 512 94 HOH HOH . J 5 HOH A 13 513 95 HOH HOH . J 5 HOH A 14 514 82 HOH HOH . J 5 HOH A 15 515 102 HOH HOH . J 5 HOH A 16 516 2 HOH HOH . J 5 HOH A 17 517 3 HOH HOH . J 5 HOH A 18 518 4 HOH HOH . J 5 HOH A 19 519 5 HOH HOH . J 5 HOH A 20 520 8 HOH HOH . J 5 HOH A 21 521 9 HOH HOH . J 5 HOH A 22 522 10 HOH HOH . J 5 HOH A 23 523 11 HOH HOH . J 5 HOH A 24 524 13 HOH HOH . J 5 HOH A 25 525 14 HOH HOH . J 5 HOH A 26 526 16 HOH HOH . J 5 HOH A 27 527 17 HOH HOH . J 5 HOH A 28 528 18 HOH HOH . J 5 HOH A 29 529 20 HOH HOH . J 5 HOH A 30 530 22 HOH HOH . J 5 HOH A 31 531 23 HOH HOH . J 5 HOH A 32 532 24 HOH HOH . J 5 HOH A 33 533 26 HOH HOH . J 5 HOH A 34 534 27 HOH HOH . J 5 HOH A 35 535 28 HOH HOH . J 5 HOH A 36 536 29 HOH HOH . J 5 HOH A 37 537 30 HOH HOH . J 5 HOH A 38 538 31 HOH HOH . J 5 HOH A 39 539 33 HOH HOH . J 5 HOH A 40 540 35 HOH HOH . J 5 HOH A 41 541 36 HOH HOH . J 5 HOH A 42 542 37 HOH HOH . J 5 HOH A 43 543 40 HOH HOH . J 5 HOH A 44 544 41 HOH HOH . J 5 HOH A 45 545 43 HOH HOH . J 5 HOH A 46 546 44 HOH HOH . J 5 HOH A 47 547 45 HOH HOH . J 5 HOH A 48 548 46 HOH HOH . J 5 HOH A 49 549 48 HOH HOH . J 5 HOH A 50 550 51 HOH HOH . J 5 HOH A 51 551 52 HOH HOH . J 5 HOH A 52 552 55 HOH HOH . J 5 HOH A 53 553 57 HOH HOH . J 5 HOH A 54 554 58 HOH HOH . J 5 HOH A 55 555 59 HOH HOH . J 5 HOH A 56 556 60 HOH HOH . J 5 HOH A 57 557 61 HOH HOH . J 5 HOH A 58 558 62 HOH HOH . J 5 HOH A 59 559 69 HOH HOH . J 5 HOH A 60 560 71 HOH HOH . J 5 HOH A 61 561 72 HOH HOH . J 5 HOH A 62 562 74 HOH HOH . J 5 HOH A 63 563 75 HOH HOH . J 5 HOH A 64 564 76 HOH HOH . J 5 HOH A 65 565 77 HOH HOH . J 5 HOH A 66 566 78 HOH HOH . J 5 HOH A 67 567 80 HOH HOH . J 5 HOH A 68 568 83 HOH HOH . J 5 HOH A 69 569 84 HOH HOH . J 5 HOH A 70 570 85 HOH HOH . J 5 HOH A 71 571 86 HOH HOH . J 5 HOH A 72 572 88 HOH HOH . J 5 HOH A 73 573 91 HOH HOH . J 5 HOH A 74 574 92 HOH HOH . J 5 HOH A 75 575 93 HOH HOH . J 5 HOH A 76 576 96 HOH HOH . J 5 HOH A 77 577 98 HOH HOH . J 5 HOH A 78 578 99 HOH HOH . J 5 HOH A 79 579 100 HOH HOH . J 5 HOH A 80 580 101 HOH HOH . J 5 HOH A 81 581 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.713 _atom_site.Cartn_y 51.806 _atom_site.Cartn_z 49.479 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #