data_4PFK # _model_server_result.job_id 0WS-sfv5keckSlHL4pi64w _model_server_result.datetime_utc '2025-07-03 20:07:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":325}' # _entry.id 4PFK # _exptl.entry_id 4PFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PFK _cell.length_a 122.5 _cell.length_b 84.1 _cell.length_c 61.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 185 A GLY 185 1_555 D MG MG . A MG 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 A OE1 GLU 187 A GLU 187 1_555 D MG MG . A MG 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 E O2A ADP . A ADP 324 1_555 C MG MG . A MG 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc4 E O2B ADP . A ADP 324 1_555 C MG MG . A MG 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc5 E O1A ADP . A ADP 324 1_555 C MG MG . A MG 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc6 E O1B ADP . A ADP 324 1_555 C MG MG . A MG 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc7 F O2B ADP . A ADP 326 1_555 D MG MG . A MG 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc8 F O2A ADP . A ADP 326 1_555 D MG MG . A MG 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc9 D MG MG . A MG 327 1_555 G O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc10 D MG MG . A MG 327 1_555 G O HOH . A HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PFK _atom_sites.fract_transf_matrix[1][1] 0.008163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 323 323 F6P F6P . C 3 MG A 1 325 325 MG MG . D 3 MG A 1 327 327 MG MG . E 4 ADP A 1 324 324 ADP ADP . F 4 ADP A 1 326 326 ADP ADP . G 5 HOH A 1 328 1 HOH HOH . G 5 HOH A 2 329 2 HOH HOH . G 5 HOH A 3 330 3 HOH HOH . G 5 HOH A 4 331 4 HOH HOH . G 5 HOH A 5 332 5 HOH HOH . G 5 HOH A 6 333 6 HOH HOH . G 5 HOH A 7 334 7 HOH HOH . G 5 HOH A 8 335 8 HOH HOH . G 5 HOH A 9 336 9 HOH HOH . G 5 HOH A 10 337 10 HOH HOH . G 5 HOH A 11 338 15 HOH HOH . G 5 HOH A 12 339 16 HOH HOH . G 5 HOH A 13 340 17 HOH HOH . G 5 HOH A 14 341 18 HOH HOH . G 5 HOH A 15 342 19 HOH HOH . G 5 HOH A 16 343 20 HOH HOH . G 5 HOH A 17 344 21 HOH HOH . G 5 HOH A 18 345 22 HOH HOH . G 5 HOH A 19 346 23 HOH HOH . G 5 HOH A 20 347 24 HOH HOH . G 5 HOH A 21 348 25 HOH HOH . G 5 HOH A 22 349 26 HOH HOH . G 5 HOH A 23 350 27 HOH HOH . G 5 HOH A 24 351 28 HOH HOH . G 5 HOH A 25 352 29 HOH HOH . G 5 HOH A 26 353 30 HOH HOH . G 5 HOH A 27 354 31 HOH HOH . G 5 HOH A 28 355 32 HOH HOH . G 5 HOH A 29 356 33 HOH HOH . G 5 HOH A 30 357 34 HOH HOH . G 5 HOH A 31 358 37 HOH HOH . G 5 HOH A 32 359 39 HOH HOH . G 5 HOH A 33 360 43 HOH HOH . G 5 HOH A 34 361 45 HOH HOH . G 5 HOH A 35 362 46 HOH HOH . G 5 HOH A 36 363 47 HOH HOH . G 5 HOH A 37 364 48 HOH HOH . G 5 HOH A 38 365 49 HOH HOH . G 5 HOH A 39 366 50 HOH HOH . G 5 HOH A 40 367 51 HOH HOH . G 5 HOH A 41 368 53 HOH HOH . G 5 HOH A 42 369 54 HOH HOH . G 5 HOH A 43 370 55 HOH HOH . G 5 HOH A 44 371 56 HOH HOH . G 5 HOH A 45 372 58 HOH HOH . G 5 HOH A 46 373 59 HOH HOH . G 5 HOH A 47 374 63 HOH HOH . G 5 HOH A 48 375 66 HOH HOH . G 5 HOH A 49 376 67 HOH HOH . G 5 HOH A 50 377 68 HOH HOH . G 5 HOH A 51 378 69 HOH HOH . G 5 HOH A 52 379 70 HOH HOH . G 5 HOH A 53 380 72 HOH HOH . G 5 HOH A 54 381 73 HOH HOH . G 5 HOH A 55 382 74 HOH HOH . G 5 HOH A 56 383 75 HOH HOH . G 5 HOH A 57 384 76 HOH HOH . G 5 HOH A 58 385 77 HOH HOH . G 5 HOH A 59 386 79 HOH HOH . G 5 HOH A 60 387 80 HOH HOH . G 5 HOH A 61 388 81 HOH HOH . G 5 HOH A 62 389 83 HOH HOH . G 5 HOH A 63 390 84 HOH HOH . G 5 HOH A 64 391 85 HOH HOH . G 5 HOH A 65 392 86 HOH HOH . G 5 HOH A 66 393 87 HOH HOH . G 5 HOH A 67 394 88 HOH HOH . G 5 HOH A 68 395 89 HOH HOH . G 5 HOH A 69 396 90 HOH HOH . G 5 HOH A 70 397 91 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.052 _atom_site.Cartn_y -14.223 _atom_site.Cartn_z 22.318 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 76.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 325 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #