data_4PG0
#
_model_server_result.job_id            U2ZEC0vAf1BH1qH-NwY9qg 
_model_server_result.datetime_utc      '2024-12-19 02:05:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pg0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4PG0 
#
_exptl.entry_id    4PG0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              212.328 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,2S)-2-nonylcyclopropanecarboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PG0 
_cell.length_a            77.354 
_cell.length_b            77.354 
_cell.length_c            115.955 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PG0 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 46 A GLU 45 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc2 A OE1 GLU 74 A GLU 73 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc3 A OE2 GLU 74 A GLU 73 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc4 A ND1 HIS 77 A HIS 76 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc5 A OE1 GLU 129 A GLU 128 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc6 A OE2 GLU 129 A GLU 128 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc7 A ND1 HIS 161 A HIS 160 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc8 B FE FE . A FE 301 1_555 D OAB Y39 . A Y39 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc9 B FE FE . A FE 301 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc10 B FE FE . A FE 301 1_555 F O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc11 C FE FE . A FE 302 1_555 D OAC Y39 . A Y39 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc12 C FE FE . A FE 302 1_555 F O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
#
_chem_comp.formula           'C13 H24 O2' 
_chem_comp.formula_weight    212.328 
_chem_comp.id                Y39 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,2S)-2-nonylcyclopropanecarboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAC CAM Y39 doub 385 n n 
CAO CAL Y39 sing 386 n n 
CAO CAM Y39 sing 387 n n 
CAO CAN Y39 sing 388 n n 
CAL CAN Y39 sing 389 n n 
CAM OAB Y39 sing 390 n n 
CAK CAN Y39 sing 391 n n 
CAK CAJ Y39 sing 392 n n 
CAI CAJ Y39 sing 393 n n 
CAI CAH Y39 sing 394 n n 
CAG CAH Y39 sing 395 n n 
CAG CAF Y39 sing 396 n n 
CAF CAE Y39 sing 397 n n 
CAD CAE Y39 sing 398 n n 
CAD CAA Y39 sing 399 n n 
OAB H1 Y39 sing 400 n n 
CAO H2 Y39 sing 401 n n 
CAL H3 Y39 sing 402 n n 
CAL H4 Y39 sing 403 n n 
CAN H5 Y39 sing 404 n n 
CAK H6 Y39 sing 405 n n 
CAK H7 Y39 sing 406 n n 
CAJ H8 Y39 sing 407 n n 
CAJ H9 Y39 sing 408 n n 
CAI H10 Y39 sing 409 n n 
CAI H11 Y39 sing 410 n n 
CAH H12 Y39 sing 411 n n 
CAH H13 Y39 sing 412 n n 
CAG H14 Y39 sing 413 n n 
CAG H15 Y39 sing 414 n n 
CAF H16 Y39 sing 415 n n 
CAF H17 Y39 sing 416 n n 
CAE H18 Y39 sing 417 n n 
CAE H19 Y39 sing 418 n n 
CAD H20 Y39 sing 419 n n 
CAD H21 Y39 sing 420 n n 
CAA H22 Y39 sing 421 n n 
CAA H23 Y39 sing 422 n n 
CAA H24 Y39 sing 423 n n 
#
_atom_sites.entry_id                     4PG0 
_atom_sites.fract_transf_matrix[1][1]    0.012928 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008624 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 301 1 FE FE . 
C 2 FE A 1 302 2 FE FE . 
D 3 Y39 A 1 303 1 Y39 Y39 . 
E 4 DMS A 1 304 1 DMS DMS . 
F 5 HOH A 1 401 119 HOH HOH . 
F 5 HOH A 2 402 6 HOH HOH . 
F 5 HOH A 3 403 117 HOH HOH . 
F 5 HOH A 4 404 4 HOH HOH . 
F 5 HOH A 5 405 12 HOH HOH . 
F 5 HOH A 6 406 2 HOH HOH . 
F 5 HOH A 7 407 30 HOH HOH . 
F 5 HOH A 8 408 31 HOH HOH . 
F 5 HOH A 9 409 18 HOH HOH . 
F 5 HOH A 10 410 51 HOH HOH . 
F 5 HOH A 11 411 45 HOH HOH . 
F 5 HOH A 12 412 93 HOH HOH . 
F 5 HOH A 13 413 73 HOH HOH . 
F 5 HOH A 14 414 67 HOH HOH . 
F 5 HOH A 15 415 69 HOH HOH . 
F 5 HOH A 16 416 110 HOH HOH . 
F 5 HOH A 17 417 82 HOH HOH . 
F 5 HOH A 18 418 121 HOH HOH . 
F 5 HOH A 19 419 52 HOH HOH . 
F 5 HOH A 20 420 25 HOH HOH . 
F 5 HOH A 21 421 26 HOH HOH . 
F 5 HOH A 22 422 16 HOH HOH . 
F 5 HOH A 23 423 22 HOH HOH . 
F 5 HOH A 24 424 42 HOH HOH . 
F 5 HOH A 25 425 123 HOH HOH . 
F 5 HOH A 26 426 41 HOH HOH . 
F 5 HOH A 27 427 81 HOH HOH . 
F 5 HOH A 28 428 15 HOH HOH . 
F 5 HOH A 29 429 96 HOH HOH . 
F 5 HOH A 30 430 100 HOH HOH . 
F 5 HOH A 31 431 48 HOH HOH . 
F 5 HOH A 32 432 11 HOH HOH . 
F 5 HOH A 33 433 9 HOH HOH . 
F 5 HOH A 34 434 55 HOH HOH . 
F 5 HOH A 35 435 58 HOH HOH . 
F 5 HOH A 36 436 57 HOH HOH . 
F 5 HOH A 37 437 103 HOH HOH . 
F 5 HOH A 38 438 65 HOH HOH . 
F 5 HOH A 39 439 91 HOH HOH . 
F 5 HOH A 40 440 116 HOH HOH . 
F 5 HOH A 41 441 76 HOH HOH . 
F 5 HOH A 42 442 122 HOH HOH . 
F 5 HOH A 43 443 1 HOH HOH . 
F 5 HOH A 44 444 3 HOH HOH . 
F 5 HOH A 45 445 5 HOH HOH . 
F 5 HOH A 46 446 7 HOH HOH . 
F 5 HOH A 47 447 8 HOH HOH . 
F 5 HOH A 48 448 10 HOH HOH . 
F 5 HOH A 49 449 13 HOH HOH . 
F 5 HOH A 50 450 14 HOH HOH . 
F 5 HOH A 51 451 17 HOH HOH . 
F 5 HOH A 52 452 19 HOH HOH . 
F 5 HOH A 53 453 20 HOH HOH . 
F 5 HOH A 54 454 21 HOH HOH . 
F 5 HOH A 55 455 23 HOH HOH . 
F 5 HOH A 56 456 24 HOH HOH . 
F 5 HOH A 57 457 27 HOH HOH . 
F 5 HOH A 58 458 28 HOH HOH . 
F 5 HOH A 59 459 29 HOH HOH . 
F 5 HOH A 60 460 32 HOH HOH . 
F 5 HOH A 61 461 33 HOH HOH . 
F 5 HOH A 62 462 34 HOH HOH . 
F 5 HOH A 63 463 35 HOH HOH . 
F 5 HOH A 64 464 36 HOH HOH . 
F 5 HOH A 65 465 37 HOH HOH . 
F 5 HOH A 66 466 38 HOH HOH . 
F 5 HOH A 67 467 39 HOH HOH . 
F 5 HOH A 68 468 40 HOH HOH . 
F 5 HOH A 69 469 43 HOH HOH . 
F 5 HOH A 70 470 44 HOH HOH . 
F 5 HOH A 71 471 46 HOH HOH . 
F 5 HOH A 72 472 47 HOH HOH . 
F 5 HOH A 73 473 49 HOH HOH . 
F 5 HOH A 74 474 50 HOH HOH . 
F 5 HOH A 75 475 53 HOH HOH . 
F 5 HOH A 76 476 54 HOH HOH . 
F 5 HOH A 77 477 56 HOH HOH . 
F 5 HOH A 78 478 59 HOH HOH . 
F 5 HOH A 79 479 60 HOH HOH . 
F 5 HOH A 80 480 61 HOH HOH . 
F 5 HOH A 81 481 62 HOH HOH . 
F 5 HOH A 82 482 63 HOH HOH . 
F 5 HOH A 83 483 64 HOH HOH . 
F 5 HOH A 84 484 66 HOH HOH . 
F 5 HOH A 85 485 68 HOH HOH . 
F 5 HOH A 86 486 70 HOH HOH . 
F 5 HOH A 87 487 71 HOH HOH . 
F 5 HOH A 88 488 72 HOH HOH . 
F 5 HOH A 89 489 74 HOH HOH . 
F 5 HOH A 90 490 75 HOH HOH . 
F 5 HOH A 91 491 77 HOH HOH . 
F 5 HOH A 92 492 78 HOH HOH . 
F 5 HOH A 93 493 79 HOH HOH . 
F 5 HOH A 94 494 80 HOH HOH . 
F 5 HOH A 95 495 83 HOH HOH . 
F 5 HOH A 96 496 84 HOH HOH . 
F 5 HOH A 97 497 85 HOH HOH . 
F 5 HOH A 98 498 86 HOH HOH . 
F 5 HOH A 99 499 87 HOH HOH . 
F 5 HOH A 100 500 88 HOH HOH . 
F 5 HOH A 101 501 89 HOH HOH . 
F 5 HOH A 102 502 90 HOH HOH . 
F 5 HOH A 103 503 92 HOH HOH . 
F 5 HOH A 104 504 94 HOH HOH . 
F 5 HOH A 105 505 95 HOH HOH . 
F 5 HOH A 106 506 97 HOH HOH . 
F 5 HOH A 107 507 98 HOH HOH . 
F 5 HOH A 108 508 99 HOH HOH . 
F 5 HOH A 109 509 101 HOH HOH . 
F 5 HOH A 110 510 102 HOH HOH . 
F 5 HOH A 111 511 104 HOH HOH . 
F 5 HOH A 112 512 105 HOH HOH . 
F 5 HOH A 113 513 106 HOH HOH . 
F 5 HOH A 114 514 107 HOH HOH . 
F 5 HOH A 115 515 108 HOH HOH . 
F 5 HOH A 116 516 109 HOH HOH . 
F 5 HOH A 117 517 111 HOH HOH . 
F 5 HOH A 118 518 112 HOH HOH . 
F 5 HOH A 119 519 113 HOH HOH . 
F 5 HOH A 120 520 114 HOH HOH . 
F 5 HOH A 121 521 115 HOH HOH . 
F 5 HOH A 122 522 118 HOH HOH . 
F 5 HOH A 123 523 120 HOH HOH . 
F 5 HOH A 124 524 124 HOH HOH . 
F 5 HOH A 125 525 125 HOH HOH . 
F 5 HOH A 126 526 126 HOH HOH . 
F 5 HOH A 127 527 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAB Y39 . . . D 3 5.83 -22.434 13.375 1 36.36 ? OAB Y39 303 A 1 
HETATM 2 C CAM Y39 . . . D 3 5.43 -22.06 12.268 1 34.37 ? CAM Y39 303 A 1 
HETATM 3 O OAC Y39 . . . D 3 6.127 -21.56 11.379 1 34.49 ? OAC Y39 303 A 1 
HETATM 4 C CAO Y39 . . . D 3 3.956 -22.286 11.94 1 30.12 ? CAO Y39 303 A 1 
HETATM 5 C CAL Y39 . . . D 3 3.557 -23.702 12.132 1 31.33 ? CAL Y39 303 A 1 
HETATM 6 C CAN Y39 . . . D 3 2.998 -22.651 13.071 1 30.22 ? CAN Y39 303 A 1 
HETATM 7 C CAK Y39 . . . D 3 1.547 -22.276 12.742 1 37.69 ? CAK Y39 303 A 1 
HETATM 8 C CAJ Y39 . . . D 3 0.582 -22.666 13.859 1 41.75 ? CAJ Y39 303 A 1 
HETATM 9 C CAI Y39 . . . D 3 -0.831 -22.229 13.444 1 43.76 ? CAI Y39 303 A 1 
HETATM 10 C CAH Y39 . . . D 3 -1.652 -21.827 14.669 1 47.48 ? CAH Y39 303 A 1 
HETATM 11 C CAG Y39 . . . D 3 -3.022 -21.31 14.214 1 50 ? CAG Y39 303 A 1 
HETATM 12 C CAF Y39 . . . D 3 -4.128 -21.819 15.138 1 52.4 ? CAF Y39 303 A 1 
HETATM 13 C CAE Y39 . . . D 3 -4.485 -20.742 16.168 1 54.63 ? CAE Y39 303 A 1 
HETATM 14 C CAD Y39 . . . D 3 -5.378 -19.704 15.499 1 56.41 ? CAD Y39 303 A 1 
HETATM 15 C CAA Y39 . . . D 3 -6.406 -19.187 16.499 1 56.6 ? CAA Y39 303 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           452 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           15 
#