data_4PG1 # _model_server_result.job_id 0CLFS-n9YCSlYGb-2LYMdA _model_server_result.datetime_utc '2024-12-19 04:38:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4PG1 # _exptl.entry_id 4PG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.328 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-nonylcyclopropanecarboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PG1 _cell.length_a 77.122 _cell.length_b 77.122 _cell.length_c 116.197 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PG1 _symmetry.cell_setting . _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 46 A GLU 45 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc2 A OE2 GLU 74 A GLU 73 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc3 A OE1 GLU 74 A GLU 73 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 A ND1 HIS 77 A HIS 76 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc5 A OE1 GLU 129 A GLU 128 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc6 A OE2 GLU 129 A GLU 128 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc7 A ND1 HIS 161 A HIS 160 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 B FE FE . A FE 301 1_555 D OAC Y39 . A Y39 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc9 B FE FE . A FE 301 1_555 G O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc10 C FE FE . A FE 302 1_555 D OAB Y39 . A Y39 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc11 C FE FE . A FE 302 1_555 G O HOH . A HOH 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc12 C FE FE . A FE 302 1_555 G O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? # _chem_comp.formula 'C13 H24 O2' _chem_comp.formula_weight 212.328 _chem_comp.id Y39 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-nonylcyclopropanecarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAM Y39 doub 385 n n CAO CAL Y39 sing 386 n n CAO CAM Y39 sing 387 n n CAO CAN Y39 sing 388 n n CAL CAN Y39 sing 389 n n CAM OAB Y39 sing 390 n n CAK CAN Y39 sing 391 n n CAK CAJ Y39 sing 392 n n CAI CAJ Y39 sing 393 n n CAI CAH Y39 sing 394 n n CAG CAH Y39 sing 395 n n CAG CAF Y39 sing 396 n n CAF CAE Y39 sing 397 n n CAD CAE Y39 sing 398 n n CAD CAA Y39 sing 399 n n OAB H1 Y39 sing 400 n n CAO H2 Y39 sing 401 n n CAL H3 Y39 sing 402 n n CAL H4 Y39 sing 403 n n CAN H5 Y39 sing 404 n n CAK H6 Y39 sing 405 n n CAK H7 Y39 sing 406 n n CAJ H8 Y39 sing 407 n n CAJ H9 Y39 sing 408 n n CAI H10 Y39 sing 409 n n CAI H11 Y39 sing 410 n n CAH H12 Y39 sing 411 n n CAH H13 Y39 sing 412 n n CAG H14 Y39 sing 413 n n CAG H15 Y39 sing 414 n n CAF H16 Y39 sing 415 n n CAF H17 Y39 sing 416 n n CAE H18 Y39 sing 417 n n CAE H19 Y39 sing 418 n n CAD H20 Y39 sing 419 n n CAD H21 Y39 sing 420 n n CAA H22 Y39 sing 421 n n CAA H23 Y39 sing 422 n n CAA H24 Y39 sing 423 n n # _atom_sites.entry_id 4PG1 _atom_sites.fract_transf_matrix[1][1] 0.012966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 1 FE FE . C 2 FE A 1 302 2 FE FE . D 3 Y39 A 1 303 1 Y39 Y39 . E 3 Y39 A 1 304 2 Y39 Y39 . F 4 DMS A 1 305 1 DMS DMS . G 5 HOH A 1 401 109 HOH HOH . G 5 HOH A 2 402 141 HOH HOH . G 5 HOH A 3 403 173 HOH HOH . G 5 HOH A 4 404 189 HOH HOH . G 5 HOH A 5 405 164 HOH HOH . G 5 HOH A 6 406 25 HOH HOH . G 5 HOH A 7 407 6 HOH HOH . G 5 HOH A 8 408 121 HOH HOH . G 5 HOH A 9 409 166 HOH HOH . G 5 HOH A 10 410 37 HOH HOH . G 5 HOH A 11 411 161 HOH HOH . G 5 HOH A 12 412 107 HOH HOH . G 5 HOH A 13 413 62 HOH HOH . G 5 HOH A 14 414 159 HOH HOH . G 5 HOH A 15 415 81 HOH HOH . G 5 HOH A 16 416 28 HOH HOH . G 5 HOH A 17 417 187 HOH HOH . G 5 HOH A 18 418 1 HOH HOH . G 5 HOH A 19 419 40 HOH HOH . G 5 HOH A 20 420 34 HOH HOH . G 5 HOH A 21 421 101 HOH HOH . G 5 HOH A 22 422 103 HOH HOH . G 5 HOH A 23 423 123 HOH HOH . G 5 HOH A 24 424 5 HOH HOH . G 5 HOH A 25 425 145 HOH HOH . G 5 HOH A 26 426 116 HOH HOH . G 5 HOH A 27 427 99 HOH HOH . G 5 HOH A 28 428 46 HOH HOH . G 5 HOH A 29 429 162 HOH HOH . G 5 HOH A 30 430 138 HOH HOH . G 5 HOH A 31 431 13 HOH HOH . G 5 HOH A 32 432 44 HOH HOH . G 5 HOH A 33 433 131 HOH HOH . G 5 HOH A 34 434 169 HOH HOH . G 5 HOH A 35 435 15 HOH HOH . G 5 HOH A 36 436 179 HOH HOH . G 5 HOH A 37 437 14 HOH HOH . G 5 HOH A 38 438 125 HOH HOH . G 5 HOH A 39 439 24 HOH HOH . G 5 HOH A 40 440 149 HOH HOH . G 5 HOH A 41 441 39 HOH HOH . G 5 HOH A 42 442 74 HOH HOH . G 5 HOH A 43 443 122 HOH HOH . G 5 HOH A 44 444 12 HOH HOH . G 5 HOH A 45 445 158 HOH HOH . G 5 HOH A 46 446 11 HOH HOH . G 5 HOH A 47 447 88 HOH HOH . G 5 HOH A 48 448 47 HOH HOH . G 5 HOH A 49 449 182 HOH HOH . G 5 HOH A 50 450 50 HOH HOH . G 5 HOH A 51 451 87 HOH HOH . G 5 HOH A 52 452 120 HOH HOH . G 5 HOH A 53 453 148 HOH HOH . G 5 HOH A 54 454 102 HOH HOH . G 5 HOH A 55 455 93 HOH HOH . G 5 HOH A 56 456 49 HOH HOH . G 5 HOH A 57 457 106 HOH HOH . G 5 HOH A 58 458 130 HOH HOH . G 5 HOH A 59 459 171 HOH HOH . G 5 HOH A 60 460 2 HOH HOH . G 5 HOH A 61 461 3 HOH HOH . G 5 HOH A 62 462 4 HOH HOH . G 5 HOH A 63 463 7 HOH HOH . G 5 HOH A 64 464 8 HOH HOH . G 5 HOH A 65 465 9 HOH HOH . G 5 HOH A 66 466 10 HOH HOH . G 5 HOH A 67 467 16 HOH HOH . G 5 HOH A 68 468 17 HOH HOH . G 5 HOH A 69 469 18 HOH HOH . G 5 HOH A 70 470 19 HOH HOH . G 5 HOH A 71 471 20 HOH HOH . G 5 HOH A 72 472 21 HOH HOH . G 5 HOH A 73 473 22 HOH HOH . G 5 HOH A 74 474 23 HOH HOH . G 5 HOH A 75 475 26 HOH HOH . G 5 HOH A 76 476 27 HOH HOH . G 5 HOH A 77 477 29 HOH HOH . G 5 HOH A 78 478 30 HOH HOH . G 5 HOH A 79 479 31 HOH HOH . G 5 HOH A 80 480 32 HOH HOH . G 5 HOH A 81 481 33 HOH HOH . G 5 HOH A 82 482 35 HOH HOH . G 5 HOH A 83 483 36 HOH HOH . G 5 HOH A 84 484 38 HOH HOH . G 5 HOH A 85 485 41 HOH HOH . G 5 HOH A 86 486 42 HOH HOH . G 5 HOH A 87 487 43 HOH HOH . G 5 HOH A 88 488 45 HOH HOH . G 5 HOH A 89 489 48 HOH HOH . G 5 HOH A 90 490 51 HOH HOH . G 5 HOH A 91 491 52 HOH HOH . G 5 HOH A 92 492 53 HOH HOH . G 5 HOH A 93 493 54 HOH HOH . G 5 HOH A 94 494 55 HOH HOH . G 5 HOH A 95 495 56 HOH HOH . G 5 HOH A 96 496 57 HOH HOH . G 5 HOH A 97 497 58 HOH HOH . G 5 HOH A 98 498 59 HOH HOH . G 5 HOH A 99 499 60 HOH HOH . G 5 HOH A 100 500 61 HOH HOH . G 5 HOH A 101 501 63 HOH HOH . G 5 HOH A 102 502 64 HOH HOH . G 5 HOH A 103 503 65 HOH HOH . G 5 HOH A 104 504 66 HOH HOH . G 5 HOH A 105 505 67 HOH HOH . G 5 HOH A 106 506 68 HOH HOH . G 5 HOH A 107 507 69 HOH HOH . G 5 HOH A 108 508 70 HOH HOH . G 5 HOH A 109 509 71 HOH HOH . G 5 HOH A 110 510 72 HOH HOH . G 5 HOH A 111 511 73 HOH HOH . G 5 HOH A 112 512 75 HOH HOH . G 5 HOH A 113 513 76 HOH HOH . G 5 HOH A 114 514 77 HOH HOH . G 5 HOH A 115 515 78 HOH HOH . G 5 HOH A 116 516 79 HOH HOH . G 5 HOH A 117 517 80 HOH HOH . G 5 HOH A 118 518 82 HOH HOH . G 5 HOH A 119 519 83 HOH HOH . G 5 HOH A 120 520 84 HOH HOH . G 5 HOH A 121 521 85 HOH HOH . G 5 HOH A 122 522 86 HOH HOH . G 5 HOH A 123 523 89 HOH HOH . G 5 HOH A 124 524 90 HOH HOH . G 5 HOH A 125 525 91 HOH HOH . G 5 HOH A 126 526 92 HOH HOH . G 5 HOH A 127 527 94 HOH HOH . G 5 HOH A 128 528 95 HOH HOH . G 5 HOH A 129 529 96 HOH HOH . G 5 HOH A 130 530 97 HOH HOH . G 5 HOH A 131 531 98 HOH HOH . G 5 HOH A 132 532 100 HOH HOH . G 5 HOH A 133 533 104 HOH HOH . G 5 HOH A 134 534 105 HOH HOH . G 5 HOH A 135 535 108 HOH HOH . G 5 HOH A 136 536 110 HOH HOH . G 5 HOH A 137 537 111 HOH HOH . G 5 HOH A 138 538 112 HOH HOH . G 5 HOH A 139 539 113 HOH HOH . G 5 HOH A 140 540 114 HOH HOH . G 5 HOH A 141 541 115 HOH HOH . G 5 HOH A 142 542 117 HOH HOH . G 5 HOH A 143 543 118 HOH HOH . G 5 HOH A 144 544 119 HOH HOH . G 5 HOH A 145 545 124 HOH HOH . G 5 HOH A 146 546 126 HOH HOH . G 5 HOH A 147 547 127 HOH HOH . G 5 HOH A 148 548 128 HOH HOH . G 5 HOH A 149 549 129 HOH HOH . G 5 HOH A 150 550 132 HOH HOH . G 5 HOH A 151 551 133 HOH HOH . G 5 HOH A 152 552 134 HOH HOH . G 5 HOH A 153 553 135 HOH HOH . G 5 HOH A 154 554 136 HOH HOH . G 5 HOH A 155 555 137 HOH HOH . G 5 HOH A 156 556 139 HOH HOH . G 5 HOH A 157 557 140 HOH HOH . G 5 HOH A 158 558 142 HOH HOH . G 5 HOH A 159 559 143 HOH HOH . G 5 HOH A 160 560 144 HOH HOH . G 5 HOH A 161 561 146 HOH HOH . G 5 HOH A 162 562 147 HOH HOH . G 5 HOH A 163 563 150 HOH HOH . G 5 HOH A 164 564 151 HOH HOH . G 5 HOH A 165 565 152 HOH HOH . G 5 HOH A 166 566 153 HOH HOH . G 5 HOH A 167 567 154 HOH HOH . G 5 HOH A 168 568 155 HOH HOH . G 5 HOH A 169 569 156 HOH HOH . G 5 HOH A 170 570 157 HOH HOH . G 5 HOH A 171 571 160 HOH HOH . G 5 HOH A 172 572 163 HOH HOH . G 5 HOH A 173 573 165 HOH HOH . G 5 HOH A 174 574 167 HOH HOH . G 5 HOH A 175 575 168 HOH HOH . G 5 HOH A 176 576 170 HOH HOH . G 5 HOH A 177 577 172 HOH HOH . G 5 HOH A 178 578 174 HOH HOH . G 5 HOH A 179 579 175 HOH HOH . G 5 HOH A 180 580 176 HOH HOH . G 5 HOH A 181 581 177 HOH HOH . G 5 HOH A 182 582 178 HOH HOH . G 5 HOH A 183 583 180 HOH HOH . G 5 HOH A 184 584 181 HOH HOH . G 5 HOH A 185 585 183 HOH HOH . G 5 HOH A 186 586 184 HOH HOH . G 5 HOH A 187 587 185 HOH HOH . G 5 HOH A 188 588 186 HOH HOH . G 5 HOH A 189 589 188 HOH HOH . G 5 HOH A 190 590 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB Y39 . . . D 3 5.911 -22.347 13.4 1 28.89 ? OAB Y39 303 A 1 HETATM 2 C CAM Y39 . . . D 3 5.495 -21.923 12.311 1 28.02 ? CAM Y39 303 A 1 HETATM 3 O OAC Y39 . . . D 3 6.181 -21.382 11.436 1 28.35 ? OAC Y39 303 A 1 HETATM 4 C CAO Y39 . . . D 3 4.022 -22.118 11.999 1 24.62 ? CAO Y39 303 A 1 HETATM 5 C CAL Y39 . . . D 3 3.59 -23.551 12.117 1 27.52 ? CAL Y39 303 A 1 HETATM 6 C CAN Y39 . . . D 3 3.105 -22.536 13.129 1 25.8 ? CAN Y39 303 A 1 HETATM 7 C CAK Y39 . . . D 3 1.69 -21.985 12.95 1 31.59 ? CAK Y39 303 A 1 HETATM 8 C CAJ Y39 . . . D 3 0.687 -22.821 13.708 1 33.72 ? CAJ Y39 303 A 1 HETATM 9 C CAI Y39 . . . D 3 -0.707 -22.35 13.301 1 38.37 ? CAI Y39 303 A 1 HETATM 10 C CAH Y39 . . . D 3 -1.389 -21.741 14.512 1 41.02 ? CAH Y39 303 A 1 HETATM 11 C CAG Y39 . . . D 3 -2.873 -21.547 14.198 1 43.11 ? CAG Y39 303 A 1 HETATM 12 C CAF Y39 . . . D 3 -3.593 -21.226 15.494 1 46.13 ? CAF Y39 303 A 1 HETATM 13 C CAE Y39 . . . D 3 -5.094 -21.113 15.22 1 46.66 ? CAE Y39 303 A 1 HETATM 14 C CAD Y39 . . . D 3 -5.612 -19.812 15.832 1 47.79 ? CAD Y39 303 A 1 HETATM 15 C CAA Y39 . . . D 3 -6.952 -19.456 15.187 1 45.76 ? CAA Y39 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 15 #