data_4PG2 # _model_server_result.job_id y2feaNJlr7cfFNuW_JrKmw _model_server_result.datetime_utc '2024-11-09 02:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 4PG2 # _exptl.entry_id 4PG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PG2 _cell.length_a 75.699 _cell.length_b 79.099 _cell.length_c 85.933 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PG2 _symmetry.cell_setting . _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 F SG2 GSH . A GSH 303 1_555 C SG CYS 1 D CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 26 C CYS 25 1_555 B SG CYS 81 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 4PG2 _atom_sites.fract_transf_matrix[1][1] 0.01321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 A 1 301 1 SO4 SO4 . E 4 SO4 A 1 302 1 SO4 SO4 . F 5 GSH A 1 303 1 GSH GTT . G 4 SO4 C 1 101 1 SO4 SO4 . H 4 SO4 D 1 101 1 SO4 SO4 . I 6 HOH A 1 401 40 HOH HOH . I 6 HOH A 2 402 36 HOH HOH . I 6 HOH A 3 403 1 HOH HOH . I 6 HOH A 4 404 3 HOH HOH . I 6 HOH A 5 405 12 HOH HOH . I 6 HOH A 6 406 22 HOH HOH . I 6 HOH A 7 407 24 HOH HOH . I 6 HOH A 8 408 29 HOH HOH . I 6 HOH A 9 409 30 HOH HOH . I 6 HOH A 10 410 37 HOH HOH . I 6 HOH A 11 411 47 HOH HOH . J 6 HOH C 1 201 42 HOH HOH . J 6 HOH C 2 202 7 HOH HOH . J 6 HOH C 3 203 35 HOH HOH . J 6 HOH C 4 204 43 HOH HOH . J 6 HOH C 5 205 45 HOH HOH . J 6 HOH C 6 206 48 HOH HOH . K 6 HOH D 1 201 2 HOH HOH . K 6 HOH D 2 202 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . F 5 -32.117 -18.035 -31.48 1 81.85 ? N1 GSH 303 A 1 HETATM 2 C CA1 GSH . . . F 5 -32.594 -18.764 -30.311 1 79.55 ? CA1 GSH 303 A 1 HETATM 3 C C1 GSH . . . F 5 -33.768 -18.033 -29.69 1 80.77 ? C1 GSH 303 A 1 HETATM 4 O O11 GSH . . . F 5 -34.714 -17.638 -30.42 1 82.6 ? O11 GSH 303 A 1 HETATM 5 O O12 GSH . . . F 5 -33.825 -17.814 -28.451 1 79.33 ? O12 GSH 303 A 1 HETATM 6 C CB1 GSH . . . F 5 -31.455 -19.016 -29.312 1 76.69 ? CB1 GSH 303 A 1 HETATM 7 C CG1 GSH . . . F 5 -30.074 -18.573 -29.81 1 75.98 ? CG1 GSH 303 A 1 HETATM 8 C CD1 GSH . . . F 5 -29.305 -17.849 -28.723 1 74.22 ? CD1 GSH 303 A 1 HETATM 9 O OE1 GSH . . . F 5 -29.514 -18.168 -27.365 1 71.99 ? OE1 GSH 303 A 1 HETATM 10 N N2 GSH . . . F 5 -28.431 -16.916 -29.116 1 74.84 ? N2 GSH 303 A 1 HETATM 11 C CA2 GSH . . . F 5 -28.573 -15.507 -28.771 1 75.35 ? CA2 GSH 303 A 1 HETATM 12 C C2 GSH . . . F 5 -28.052 -14.584 -29.847 1 78.17 ? C2 GSH 303 A 1 HETATM 13 O O2 GSH . . . F 5 -27.413 -13.373 -29.497 1 78.84 ? O2 GSH 303 A 1 HETATM 14 C CB2 GSH . . . F 5 -27.894 -15.227 -27.433 1 73.69 ? CB2 GSH 303 A 1 HETATM 15 S SG2 GSH . . . F 5 -26.116 -15.57 -27.464 1 71.84 ? SG2 GSH 303 A 1 HETATM 16 N N3 GSH . . . F 5 -28.244 -14.969 -31.121 1 80.13 ? N3 GSH 303 A 1 HETATM 17 C CA3 GSH . . . F 5 -27.248 -14.848 -32.18 1 81.76 ? CA3 GSH 303 A 1 HETATM 18 C C3 GSH . . . F 5 -25.982 -15.632 -31.886 1 80.62 ? C3 GSH 303 A 1 HETATM 19 O O31 GSH . . . F 5 -25.966 -16.881 -31.958 1 79.32 ? O31 GSH 303 A 1 HETATM 20 O O32 GSH . . . F 5 -24.925 -15.047 -31.56 1 80.8 ? O32 GSH 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #