data_4PG9
#
_model_server_result.job_id            UC4HVhOzelHVntof-JtYkQ 
_model_server_result.datetime_utc      '2024-11-25 03:27:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pg9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4PG9 
#
_exptl.entry_id    4PG9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PG9 
_cell.length_a            87.721 
_cell.length_b            136.533 
_cell.length_c            45.203 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PG9 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 127 A CYS 101 1_555 A SG CYS 190 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 A SG CYS 229 A CYS 203 1_555 A SG CYS 285 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4PG9 
_atom_sites.fract_transf_matrix[1][1]    0.0114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007324 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022122 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 301 2 GOL GOL . 
E 4 GOL A 1 302 3 GOL GOL . 
F 4 GOL A 1 303 4 GOL GOL . 
G 4 GOL A 1 304 5 GOL GOL . 
H 4 GOL A 1 305 1 GOL GOL . 
I 4 GOL B 1 101 1 GOL GOL . 
J 4 GOL B 1 102 6 GOL GOL . 
K 4 GOL B 1 103 1 GOL GOL . 
L 4 GOL B 1 104 1 GOL GOL . 
M 4 GOL C 1 101 1 GOL GOL . 
N 5 HOH A 1 401 9 HOH HOH . 
N 5 HOH A 2 402 8 HOH HOH . 
N 5 HOH A 3 403 10 HOH HOH . 
N 5 HOH A 4 404 38 HOH HOH . 
N 5 HOH A 5 405 48 HOH HOH . 
N 5 HOH A 6 406 13 HOH HOH . 
N 5 HOH A 7 407 1 HOH HOH . 
N 5 HOH A 8 408 3 HOH HOH . 
N 5 HOH A 9 409 4 HOH HOH . 
N 5 HOH A 10 410 5 HOH HOH . 
N 5 HOH A 11 411 6 HOH HOH . 
N 5 HOH A 12 412 7 HOH HOH . 
N 5 HOH A 13 413 15 HOH HOH . 
N 5 HOH A 14 414 16 HOH HOH . 
N 5 HOH A 15 415 17 HOH HOH . 
N 5 HOH A 16 416 18 HOH HOH . 
N 5 HOH A 17 417 19 HOH HOH . 
N 5 HOH A 18 418 23 HOH HOH . 
N 5 HOH A 19 419 25 HOH HOH . 
N 5 HOH A 20 420 27 HOH HOH . 
N 5 HOH A 21 421 28 HOH HOH . 
N 5 HOH A 22 422 30 HOH HOH . 
N 5 HOH A 23 423 33 HOH HOH . 
N 5 HOH A 24 424 34 HOH HOH . 
N 5 HOH A 25 425 35 HOH HOH . 
N 5 HOH A 26 426 36 HOH HOH . 
N 5 HOH A 27 427 37 HOH HOH . 
N 5 HOH A 28 428 39 HOH HOH . 
N 5 HOH A 29 429 40 HOH HOH . 
N 5 HOH A 30 430 41 HOH HOH . 
N 5 HOH A 31 431 42 HOH HOH . 
N 5 HOH A 32 432 43 HOH HOH . 
N 5 HOH A 33 433 44 HOH HOH . 
N 5 HOH A 34 434 45 HOH HOH . 
N 5 HOH A 35 435 46 HOH HOH . 
N 5 HOH A 36 436 49 HOH HOH . 
N 5 HOH A 37 437 50 HOH HOH . 
N 5 HOH A 38 438 51 HOH HOH . 
N 5 HOH A 39 439 52 HOH HOH . 
N 5 HOH A 40 440 53 HOH HOH . 
O 5 HOH B 1 201 31 HOH HOH . 
O 5 HOH B 2 202 11 HOH HOH . 
O 5 HOH B 3 203 14 HOH HOH . 
O 5 HOH B 4 204 20 HOH HOH . 
O 5 HOH B 5 205 21 HOH HOH . 
O 5 HOH B 6 206 22 HOH HOH . 
O 5 HOH B 7 207 24 HOH HOH . 
O 5 HOH B 8 208 32 HOH HOH . 
O 5 HOH B 9 209 47 HOH HOH . 
P 5 HOH C 1 201 54 HOH HOH . 
P 5 HOH C 2 202 2 HOH HOH . 
P 5 HOH C 3 203 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 63.774 13.471 10.271 1 43.78 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . D 4 64.719 14.478 10.646 1 45.11 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . D 4 63.587 13.489 8.759 1 40.87 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . D 4 64.702 12.865 8.116 1 41.25 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . D 4 62.313 12.744 8.394 1 38.08 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . D 4 62.386 12.311 7.033 1 39.74 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#