data_4PGC
#
_model_server_result.job_id            J5-2ELN59ykgBvpcgQBOkA 
_model_server_result.datetime_utc      '2024-10-19 07:26:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    4PGC 
#
_exptl.entry_id    4PGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.58 
_cell.angle_gamma         90 
_cell.entry_id            4PGC 
_cell.length_a            66.179 
_cell.length_b            90.303 
_cell.length_c            89.37 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,H,I,J,K,N,O,P 1 1 
D,E,F,L,M,Q,R 2 1 
G,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 127 A CYS 101 1_555 A SG CYS 190 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 A SG CYS 229 A CYS 203 1_555 A SG CYS 285 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 D SG CYS 127 D CYS 101 1_555 D SG CYS 190 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf5 D SG CYS 229 D CYS 203 1_555 D SG CYS 285 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf6 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 C C ASN 5 C ASN 5 1_555 C N TYI 6 C TYI 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 C C TYI 6 C TYI 6 1_555 C N PRO 7 C PRO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 F C ASN 5 F ASN 5 1_555 F N TYI 6 F TYI 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 F C TYI 6 F TYI 6 1_555 F N PRO 7 F PRO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 G C UNK 1 H UNK 4 1_555 G N LYS 2 H LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 G C LYS 2 H LYS 5 1_555 G N UNK 3 H UNK 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale7 G C UNK 3 H UNK 6 1_555 G N UNK 4 H UNK 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 G C UNK 4 H UNK 7 1_555 G N SER 5 H SER 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale9 G C SER 5 H SER 8 1_555 G N UNK 6 H UNK 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale10 G C UNK 6 H UNK 9 1_555 G N UNK 7 H UNK 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 G C UNK 7 H UNK 10 1_555 G N UNK 8 H UNK 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale12 G C UNK 8 H UNK 11 1_555 G N LEU 9 H LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale13 G C LEU 9 H LEU 12 1_555 G N UNK 10 H UNK 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale14 G C UNK 10 H UNK 13 1_555 G N UNK 11 H UNK 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale15 G C UNK 11 H UNK 14 1_555 G N UNK 12 H UNK 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale16 G C UNK 12 H UNK 15 1_555 G N THR 13 H THR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4PGC 
_atom_sites.fract_transf_matrix[1][1]    0.015111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005975 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011074 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 5 GOL A 1 301 1 GOL GOL . 
I 5 GOL B 1 101 2 GOL GOL . 
J 5 GOL B 1 102 4 GOL GOL . 
K 5 GOL B 1 103 6 GOL GOL . 
L 5 GOL D 1 301 3 GOL GOL . 
M 5 GOL E 1 101 5 GOL GOL . 
N 6 HOH A 1 401 40 HOH HOH . 
N 6 HOH A 2 402 35 HOH HOH . 
N 6 HOH A 3 403 25 HOH HOH . 
N 6 HOH A 4 404 47 HOH HOH . 
N 6 HOH A 5 405 2 HOH HOH . 
N 6 HOH A 6 406 3 HOH HOH . 
N 6 HOH A 7 407 11 HOH HOH . 
N 6 HOH A 8 408 12 HOH HOH . 
N 6 HOH A 9 409 26 HOH HOH . 
N 6 HOH A 10 410 29 HOH HOH . 
N 6 HOH A 11 411 32 HOH HOH . 
N 6 HOH A 12 412 33 HOH HOH . 
N 6 HOH A 13 413 34 HOH HOH . 
N 6 HOH A 14 414 38 HOH HOH . 
N 6 HOH A 15 415 42 HOH HOH . 
N 6 HOH A 16 416 48 HOH HOH . 
N 6 HOH A 17 417 50 HOH HOH . 
N 6 HOH A 18 418 51 HOH HOH . 
N 6 HOH A 19 419 58 HOH HOH . 
O 6 HOH B 1 201 55 HOH HOH . 
O 6 HOH B 2 202 6 HOH HOH . 
O 6 HOH B 3 203 9 HOH HOH . 
O 6 HOH B 4 204 10 HOH HOH . 
O 6 HOH B 5 205 13 HOH HOH . 
O 6 HOH B 6 206 19 HOH HOH . 
O 6 HOH B 7 207 21 HOH HOH . 
O 6 HOH B 8 208 27 HOH HOH . 
O 6 HOH B 9 209 41 HOH HOH . 
O 6 HOH B 10 210 43 HOH HOH . 
O 6 HOH B 11 211 54 HOH HOH . 
O 6 HOH B 12 212 56 HOH HOH . 
P 6 HOH C 1 101 22 HOH HOH . 
Q 6 HOH D 1 401 7 HOH HOH . 
Q 6 HOH D 2 402 37 HOH HOH . 
Q 6 HOH D 3 403 30 HOH HOH . 
Q 6 HOH D 4 404 59 HOH HOH . 
Q 6 HOH D 5 405 23 HOH HOH . 
Q 6 HOH D 6 406 28 HOH HOH . 
Q 6 HOH D 7 407 1 HOH HOH . 
Q 6 HOH D 8 408 4 HOH HOH . 
Q 6 HOH D 9 409 15 HOH HOH . 
Q 6 HOH D 10 410 18 HOH HOH . 
Q 6 HOH D 11 411 20 HOH HOH . 
Q 6 HOH D 12 412 24 HOH HOH . 
Q 6 HOH D 13 413 31 HOH HOH . 
Q 6 HOH D 14 414 45 HOH HOH . 
Q 6 HOH D 15 415 46 HOH HOH . 
Q 6 HOH D 16 416 49 HOH HOH . 
Q 6 HOH D 17 417 52 HOH HOH . 
Q 6 HOH D 18 418 57 HOH HOH . 
R 6 HOH E 1 201 14 HOH HOH . 
R 6 HOH E 2 202 16 HOH HOH . 
R 6 HOH E 3 203 17 HOH HOH . 
R 6 HOH E 4 204 36 HOH HOH . 
R 6 HOH E 5 205 39 HOH HOH . 
R 6 HOH E 6 206 44 HOH HOH . 
S 6 HOH H 1 101 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 5 2.323 21.486 16.103 1 44.91 ? C1 GOL 301 D 1 
HETATM 2 O O1 GOL . . . L 5 2.542 22.693 16.852 1 37.27 ? O1 GOL 301 D 1 
HETATM 3 C C2 GOL . . . L 5 1.62 21.761 14.77 1 44.93 ? C2 GOL 301 D 1 
HETATM 4 O O2 GOL . . . L 5 0.715 22.858 14.923 1 57.83 ? O2 GOL 301 D 1 
HETATM 5 C C3 GOL . . . L 5 2.605 22.134 13.665 1 48.88 ? C3 GOL 301 D 1 
HETATM 6 O O3 GOL . . . L 5 2.325 21.441 12.441 1 46.78 ? O3 GOL 301 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#