data_4PGK # _model_server_result.job_id ZinZe7wGWxHWJ7wyI_Vb4w _model_server_result.datetime_utc '2024-10-21 05:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4PGK # _exptl.entry_id 4PGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.449 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 11-[2-(2-ethoxyethoxy)ethoxy]undecanal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PGK _cell.length_a 77.34 _cell.length_b 77.34 _cell.length_c 116.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PGK _symmetry.cell_setting . _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 46 A GLU 45 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 A OE2 GLU 46 A GLU 45 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc3 A OH TYR 53 A TYR 52 1_555 C FE FE . A FE 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc4 A OE1 GLU 74 A GLU 73 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc5 A OE2 GLU 74 A GLU 73 1_555 C FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc6 A OE1 GLU 129 A GLU 128 1_555 C FE FE . A FE 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc7 A OE2 GLU 129 A GLU 128 1_555 C FE FE . A FE 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 A OE2 GLU 158 A GLU 157 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc9 A ND1 HIS 161 A HIS 160 1_555 C FE FE . A FE 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 C FE FE . A FE 302 1_555 D OAB Y69 . A Y69 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.989 ? metalc ? metalc11 C FE FE . A FE 302 1_555 D OAB Y69 . A Y69 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C17 H34 O4' _chem_comp.formula_weight 302.449 _chem_comp.id Y69 _chem_comp.mon_nstd_flag . _chem_comp.name 11-[2-(2-ethoxyethoxy)ethoxy]undecanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAD Y69 sing 376 n n CAD OAS Y69 sing 377 n n OAS CAO Y69 sing 378 n n CAO CAQ Y69 sing 379 n n CAQ OAU Y69 sing 380 n n OAU CAR Y69 sing 381 n n CAR CAP Y69 sing 382 n n OAB CAC Y69 doub 383 n n CAP OAT Y69 sing 384 n n CAE CAC Y69 sing 385 n n CAE CAF Y69 sing 386 n n OAT CAN Y69 sing 387 n n CAG CAF Y69 sing 388 n n CAG CAH Y69 sing 389 n n CAI CAH Y69 sing 390 n n CAI CAJ Y69 sing 391 n n CAN CAM Y69 sing 392 n n CAK CAJ Y69 sing 393 n n CAK CAL Y69 sing 394 n n CAM CAL Y69 sing 395 n n CAC H1 Y69 sing 396 n n CAE H2 Y69 sing 397 n n CAE H3 Y69 sing 398 n n CAF H4 Y69 sing 399 n n CAF H5 Y69 sing 400 n n CAG H6 Y69 sing 401 n n CAG H7 Y69 sing 402 n n CAH H8 Y69 sing 403 n n CAH H9 Y69 sing 404 n n CAI H10 Y69 sing 405 n n CAI H11 Y69 sing 406 n n CAJ H12 Y69 sing 407 n n CAJ H13 Y69 sing 408 n n CAK H14 Y69 sing 409 n n CAK H15 Y69 sing 410 n n CAL H16 Y69 sing 411 n n CAL H17 Y69 sing 412 n n CAM H18 Y69 sing 413 n n CAM H19 Y69 sing 414 n n CAN H20 Y69 sing 415 n n CAN H21 Y69 sing 416 n n CAP H22 Y69 sing 417 n n CAP H23 Y69 sing 418 n n CAR H24 Y69 sing 419 n n CAR H25 Y69 sing 420 n n CAQ H26 Y69 sing 421 n n CAQ H27 Y69 sing 422 n n CAO H28 Y69 sing 423 n n CAO H29 Y69 sing 424 n n CAD H30 Y69 sing 425 n n CAD H31 Y69 sing 426 n n CAA H32 Y69 sing 427 n n CAA H33 Y69 sing 428 n n CAA H34 Y69 sing 429 n n # _atom_sites.entry_id 4PGK _atom_sites.fract_transf_matrix[1][1] 0.01293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 1 FE FE . C 2 FE A 1 302 2 FE FE . D 3 Y69 A 1 303 1 Y69 Y69 . E 4 HOH A 1 401 5 HOH HOH . E 4 HOH A 2 402 66 HOH HOH . E 4 HOH A 3 403 16 HOH HOH . E 4 HOH A 4 404 3 HOH HOH . E 4 HOH A 5 405 4 HOH HOH . E 4 HOH A 6 406 25 HOH HOH . E 4 HOH A 7 407 32 HOH HOH . E 4 HOH A 8 408 17 HOH HOH . E 4 HOH A 9 409 70 HOH HOH . E 4 HOH A 10 410 61 HOH HOH . E 4 HOH A 11 411 13 HOH HOH . E 4 HOH A 12 412 53 HOH HOH . E 4 HOH A 13 413 22 HOH HOH . E 4 HOH A 14 414 54 HOH HOH . E 4 HOH A 15 415 28 HOH HOH . E 4 HOH A 16 416 15 HOH HOH . E 4 HOH A 17 417 86 HOH HOH . E 4 HOH A 18 418 71 HOH HOH . E 4 HOH A 19 419 10 HOH HOH . E 4 HOH A 20 420 80 HOH HOH . E 4 HOH A 21 421 26 HOH HOH . E 4 HOH A 22 422 62 HOH HOH . E 4 HOH A 23 423 52 HOH HOH . E 4 HOH A 24 424 56 HOH HOH . E 4 HOH A 25 425 33 HOH HOH . E 4 HOH A 26 426 45 HOH HOH . E 4 HOH A 27 427 57 HOH HOH . E 4 HOH A 28 428 48 HOH HOH . E 4 HOH A 29 429 1 HOH HOH . E 4 HOH A 30 430 2 HOH HOH . E 4 HOH A 31 431 6 HOH HOH . E 4 HOH A 32 432 7 HOH HOH . E 4 HOH A 33 433 8 HOH HOH . E 4 HOH A 34 434 9 HOH HOH . E 4 HOH A 35 435 11 HOH HOH . E 4 HOH A 36 436 12 HOH HOH . E 4 HOH A 37 437 14 HOH HOH . E 4 HOH A 38 438 18 HOH HOH . E 4 HOH A 39 439 19 HOH HOH . E 4 HOH A 40 440 20 HOH HOH . E 4 HOH A 41 441 21 HOH HOH . E 4 HOH A 42 442 23 HOH HOH . E 4 HOH A 43 443 24 HOH HOH . E 4 HOH A 44 444 27 HOH HOH . E 4 HOH A 45 445 29 HOH HOH . E 4 HOH A 46 446 30 HOH HOH . E 4 HOH A 47 447 31 HOH HOH . E 4 HOH A 48 448 34 HOH HOH . E 4 HOH A 49 449 35 HOH HOH . E 4 HOH A 50 450 36 HOH HOH . E 4 HOH A 51 451 37 HOH HOH . E 4 HOH A 52 452 38 HOH HOH . E 4 HOH A 53 453 39 HOH HOH . E 4 HOH A 54 454 40 HOH HOH . E 4 HOH A 55 455 41 HOH HOH . E 4 HOH A 56 456 42 HOH HOH . E 4 HOH A 57 457 43 HOH HOH . E 4 HOH A 58 458 44 HOH HOH . E 4 HOH A 59 459 46 HOH HOH . E 4 HOH A 60 460 47 HOH HOH . E 4 HOH A 61 461 49 HOH HOH . E 4 HOH A 62 462 50 HOH HOH . E 4 HOH A 63 463 51 HOH HOH . E 4 HOH A 64 464 55 HOH HOH . E 4 HOH A 65 465 58 HOH HOH . E 4 HOH A 66 466 59 HOH HOH . E 4 HOH A 67 467 60 HOH HOH . E 4 HOH A 68 468 63 HOH HOH . E 4 HOH A 69 469 64 HOH HOH . E 4 HOH A 70 470 65 HOH HOH . E 4 HOH A 71 471 67 HOH HOH . E 4 HOH A 72 472 68 HOH HOH . E 4 HOH A 73 473 69 HOH HOH . E 4 HOH A 74 474 72 HOH HOH . E 4 HOH A 75 475 73 HOH HOH . E 4 HOH A 76 476 74 HOH HOH . E 4 HOH A 77 477 75 HOH HOH . E 4 HOH A 78 478 76 HOH HOH . E 4 HOH A 79 479 77 HOH HOH . E 4 HOH A 80 480 78 HOH HOH . E 4 HOH A 81 481 79 HOH HOH . E 4 HOH A 82 482 81 HOH HOH . E 4 HOH A 83 483 82 HOH HOH . E 4 HOH A 84 484 83 HOH HOH . E 4 HOH A 85 485 84 HOH HOH . E 4 HOH A 86 486 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB Y69 . A . D 3 -22.048 5.931 -11.562 0.5 41.99 ? OAB Y69 303 A 1 HETATM 2 O OAB Y69 . B . D 3 -20.164 6.28 -11.968 0.5 45.82 ? OAB Y69 303 A 1 HETATM 3 C CAC Y69 . A . D 3 -22.262 5.237 -12.555 0.5 43.56 ? CAC Y69 303 A 1 HETATM 4 C CAC Y69 . B . D 3 -21.294 5.904 -11.659 0.5 45.05 ? CAC Y69 303 A 1 HETATM 5 C CAE Y69 . A . D 3 -23.053 3.931 -12.446 0.5 45 ? CAE Y69 303 A 1 HETATM 6 C CAE Y69 . B . D 3 -22.278 5.42 -12.723 0.5 44.61 ? CAE Y69 303 A 1 HETATM 7 C CAF Y69 . A . D 3 -22.606 2.969 -13.548 0.5 46.57 ? CAF Y69 303 A 1 HETATM 8 C CAF Y69 . B . D 3 -22.934 4.118 -12.254 0.5 44.33 ? CAF Y69 303 A 1 HETATM 9 C CAG Y69 . A . D 3 -22.654 1.529 -13.027 0.5 47.65 ? CAG Y69 303 A 1 HETATM 10 C CAG Y69 . B . D 3 -22.854 3.075 -13.368 0.5 44.04 ? CAG Y69 303 A 1 HETATM 11 C CAH Y69 . A . D 3 -22.179 0.577 -14.128 0.5 48.64 ? CAH Y69 303 A 1 HETATM 12 C CAH Y69 . B . D 3 -22.716 1.676 -12.762 0.5 43.44 ? CAH Y69 303 A 1 HETATM 13 C CAI Y69 . A . D 3 -21.946 -0.814 -13.535 0.5 49.86 ? CAI Y69 303 A 1 HETATM 14 C CAI Y69 . B . D 3 -22.563 0.656 -13.894 0.5 43.03 ? CAI Y69 303 A 1 HETATM 15 C CAJ Y69 . A . D 3 -21.114 -1.657 -14.506 0.5 50.94 ? CAJ Y69 303 A 1 HETATM 16 C CAJ Y69 . B . D 3 -22.272 -0.728 -13.31 0.5 42.84 ? CAJ Y69 303 A 1 HETATM 17 C CAK Y69 . A . D 3 -21.593 -3.113 -14.452 0.5 51.82 ? CAK Y69 303 A 1 HETATM 18 C CAK Y69 . B . D 3 -21.165 -1.408 -14.123 0.5 42.51 ? CAK Y69 303 A 1 HETATM 19 C CAL Y69 . A . D 3 -20.568 -4.04 -15.113 0.5 52.15 ? CAL Y69 303 A 1 HETATM 20 C CAL Y69 . B . D 3 -21.676 -2.744 -14.675 0.5 41.9 ? CAL Y69 303 A 1 HETATM 21 C CAM Y69 . A . D 3 -20.38 -5.297 -14.256 0.5 51.69 ? CAM Y69 303 A 1 HETATM 22 C CAM Y69 . B . D 3 -20.633 -3.846 -14.447 0.5 40.41 ? CAM Y69 303 A 1 HETATM 23 C CAN Y69 . A . D 3 -18.891 -5.51 -13.977 0.5 50.93 ? CAN Y69 303 A 1 HETATM 24 C CAN Y69 . B . D 3 -20.865 -5.003 -15.432 0.5 37.88 ? CAN Y69 303 A 1 HETATM 25 O OAT Y69 . A . D 3 -18.526 -4.836 -12.766 0.5 50.32 ? OAT Y69 303 A 1 HETATM 26 O OAT Y69 . B . D 3 -19.873 -4.975 -16.467 0.5 35.07 ? OAT Y69 303 A 1 HETATM 27 C CAP Y69 . A . D 3 -17.447 -5.542 -12.147 0.5 48.93 ? CAP Y69 303 A 1 HETATM 28 C CAP Y69 . B . D 3 -20.304 -4.051 -17.466 0.5 33.34 ? CAP Y69 303 A 1 HETATM 29 C CAR Y69 . A . D 3 -16.68 -4.619 -11.198 0.5 47.72 ? CAR Y69 303 A 1 HETATM 30 C CAR Y69 . B . D 3 -19.176 -3.776 -18.455 0.5 31.94 ? CAR Y69 303 A 1 HETATM 31 O OAU Y69 . A . D 3 -15.842 -5.407 -10.348 0.5 47.09 ? OAU Y69 303 A 1 HETATM 32 O OAU Y69 . B . D 3 -19.262 -2.411 -18.871 0.5 31.12 ? OAU Y69 303 A 1 HETATM 33 C CAQ Y69 . A . D 3 -16.455 -5.609 -9.068 0.5 45.91 ? CAQ Y69 303 A 1 HETATM 34 C CAQ Y69 . B . D 3 -19.298 -2.337 -20.291 0.5 28.83 ? CAQ Y69 303 A 1 HETATM 35 C CAO Y69 . A . D 3 -15.4 -6.103 -8.074 0.5 44.79 ? CAO Y69 303 A 1 HETATM 36 C CAO Y69 . B . D 3 -20.707 -2.031 -20.783 0.5 28.14 ? CAO Y69 303 A 1 HETATM 37 O OAS Y69 . A . D 3 -16.02 -6.515 -6.855 0.5 43.81 ? OAS Y69 303 A 1 HETATM 38 O OAS Y69 . B . D 3 -20.679 -0.838 -21.579 0.5 28.26 ? OAS Y69 303 A 1 HETATM 39 C CAD Y69 . A . D 3 -15.183 -7.481 -6.211 0.5 43.07 ? CAD Y69 303 A 1 HETATM 40 C CAD Y69 . B . D 3 -21.552 -0.966 -22.707 0.5 26.25 ? CAD Y69 303 A 1 HETATM 41 C CAA Y69 . A . D 3 -14.869 -7.026 -4.785 0.5 42.46 ? CAA Y69 303 A 1 HETATM 42 C CAA Y69 . B . D 3 -23.009 -0.865 -22.256 0.5 24.09 ? CAA Y69 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #