data_4PGZ # _model_server_result.job_id CNoNZt041xSea3c8iNQrrQ _model_server_result.datetime_utc '2025-03-28 13:45:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":604}' # _entry.id 4PGZ # _exptl.entry_id 4PGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.46 _cell.angle_gamma 90 _cell.entry_id 4PGZ _cell.length_a 163.592 _cell.length_b 63.548 _cell.length_c 81.547 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PGZ _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,L 1 1,2 B,C,G,H,I,J,K,M,N 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -37.603707 0 72.359342 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 C CYS 428 1_555 A SG CYS 185 C CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 122 A CYS 428 1_555 B SG CYS 185 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 137 A CYS 443 1_555 B SG CYS 144 A CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 C SG CYS 122 B CYS 428 1_555 C SG CYS 185 B CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 137 B CYS 443 1_555 C SG CYS 144 B CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 16 C ASN 320 1_555 D C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 B ND2 ASN 16 A ASN 320 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 C ND2 ASN 16 B ASN 320 1_555 K C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A NE2 HIS 41 C HIS 345 1_555 H CO CO . A CO 602 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A OE2 GLU 56 C GLU 360 1_555 E CO CO . C CO 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 A OE2 GLU 129 C GLU 435 1_555 F CO CO . C CO 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 E CO CO . C CO 602 1_555 L O HOH . C HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc5 E CO CO . C CO 602 1_555 N O HOH . B HOH 703 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc6 F CO CO . C CO 603 1_555 L O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc7 F CO CO . C CO 603 1_554 B NE2 HIS 41 A HIS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 L O HOH . C HOH 708 1_554 H CO CO . A CO 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc9 L O HOH . C HOH 716 4_556 I CO CO . A CO 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc10 B OE2 GLU 56 A GLU 360 1_555 I CO CO . A CO 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc11 B OE1 GLU 72 A GLU 376 1_555 J CO CO . A CO 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc12 B OE1 GLU 129 A GLU 435 1_555 H CO CO . A CO 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc13 I CO CO . A CO 603 1_555 M O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PGZ _atom_sites.fract_transf_matrix[1][1] 0.006113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003177 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG C 1 601 1 NAG NAG . E 3 CO C 1 602 2 CO CO . F 3 CO C 1 603 4 CO CO . G 2 NAG A 1 601 1 NAG NAG . H 3 CO A 1 602 1 CO CO . I 3 CO A 1 603 3 CO CO . J 3 CO A 1 604 5 CO CO . K 2 NAG B 1 601 1 NAG NAG . L 4 HOH C 1 701 53 HOH HOH . L 4 HOH C 2 702 62 HOH HOH . L 4 HOH C 3 703 34 HOH HOH . L 4 HOH C 4 704 8 HOH HOH . L 4 HOH C 5 705 67 HOH HOH . L 4 HOH C 6 706 37 HOH HOH . L 4 HOH C 7 707 35 HOH HOH . L 4 HOH C 8 708 66 HOH HOH . L 4 HOH C 9 709 58 HOH HOH . L 4 HOH C 10 710 1 HOH HOH . L 4 HOH C 11 711 68 HOH HOH . L 4 HOH C 12 712 20 HOH HOH . L 4 HOH C 13 713 7 HOH HOH . L 4 HOH C 14 714 10 HOH HOH . L 4 HOH C 15 715 51 HOH HOH . L 4 HOH C 16 716 50 HOH HOH . L 4 HOH C 17 717 19 HOH HOH . L 4 HOH C 18 718 42 HOH HOH . L 4 HOH C 19 719 65 HOH HOH . L 4 HOH C 20 720 15 HOH HOH . L 4 HOH C 21 721 55 HOH HOH . L 4 HOH C 22 722 77 HOH HOH . L 4 HOH C 23 723 4 HOH HOH . L 4 HOH C 24 724 9 HOH HOH . L 4 HOH C 25 725 11 HOH HOH . L 4 HOH C 26 726 12 HOH HOH . L 4 HOH C 27 727 16 HOH HOH . L 4 HOH C 28 728 17 HOH HOH . L 4 HOH C 29 729 24 HOH HOH . L 4 HOH C 30 730 25 HOH HOH . L 4 HOH C 31 731 26 HOH HOH . L 4 HOH C 32 732 28 HOH HOH . L 4 HOH C 33 733 30 HOH HOH . L 4 HOH C 34 734 49 HOH HOH . L 4 HOH C 35 735 52 HOH HOH . L 4 HOH C 36 736 54 HOH HOH . L 4 HOH C 37 737 61 HOH HOH . L 4 HOH C 38 738 69 HOH HOH . M 4 HOH A 1 701 59 HOH HOH . M 4 HOH A 2 702 2 HOH HOH . M 4 HOH A 3 703 43 HOH HOH . M 4 HOH A 4 704 18 HOH HOH . M 4 HOH A 5 705 79 HOH HOH . M 4 HOH A 6 706 57 HOH HOH . M 4 HOH A 7 707 38 HOH HOH . M 4 HOH A 8 708 5 HOH HOH . M 4 HOH A 9 709 3 HOH HOH . M 4 HOH A 10 710 63 HOH HOH . M 4 HOH A 11 711 73 HOH HOH . M 4 HOH A 12 712 56 HOH HOH . M 4 HOH A 13 713 76 HOH HOH . M 4 HOH A 14 714 75 HOH HOH . M 4 HOH A 15 715 6 HOH HOH . M 4 HOH A 16 716 13 HOH HOH . M 4 HOH A 17 717 22 HOH HOH . M 4 HOH A 18 718 23 HOH HOH . M 4 HOH A 19 719 27 HOH HOH . M 4 HOH A 20 720 31 HOH HOH . M 4 HOH A 21 721 32 HOH HOH . M 4 HOH A 22 722 39 HOH HOH . M 4 HOH A 23 723 40 HOH HOH . M 4 HOH A 24 724 41 HOH HOH . M 4 HOH A 25 725 46 HOH HOH . M 4 HOH A 26 726 64 HOH HOH . M 4 HOH A 27 727 70 HOH HOH . M 4 HOH A 28 728 71 HOH HOH . M 4 HOH A 29 729 74 HOH HOH . M 4 HOH A 30 730 78 HOH HOH . M 4 HOH A 31 731 81 HOH HOH . M 4 HOH A 32 732 82 HOH HOH . N 4 HOH B 1 701 29 HOH HOH . N 4 HOH B 2 702 48 HOH HOH . N 4 HOH B 3 703 45 HOH HOH . N 4 HOH B 4 704 72 HOH HOH . N 4 HOH B 5 705 36 HOH HOH . N 4 HOH B 6 706 21 HOH HOH . N 4 HOH B 7 707 14 HOH HOH . N 4 HOH B 8 708 33 HOH HOH . N 4 HOH B 9 709 44 HOH HOH . N 4 HOH B 10 710 47 HOH HOH . N 4 HOH B 11 711 60 HOH HOH . N 4 HOH B 12 712 80 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 48.752 _atom_site.Cartn_y -1.566 _atom_site.Cartn_z -1.25 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 132.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 604 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #