data_4PHU # _model_server_result.job_id QoW9hekUgfEzD_UiQBN74g _model_server_result.datetime_utc '2024-11-21 14:05:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4phu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 4PHU # _exptl.entry_id 4PHU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 524.625 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[(3S)-6-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy]biphenyl-3-yl}methoxy)-2,3-dihydro-1-benzofuran-3-yl]acetic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.9 _cell.angle_gamma 90 _cell.entry_id 4PHU _cell.length_a 101 _cell.length_b 61.74 _cell.length_c 105.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PHU _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 79 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 183 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 170 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.091 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H32 O7 S' _chem_comp.formula_weight 524.625 _chem_comp.id 2YB _chem_comp.mon_nstd_flag . _chem_comp.name "[(3S)-6-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy]biphenyl-3-yl}methoxy)-2,3-dihydro-1-benzofuran-3-yl]acetic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 2YB doub 38 n y C19 C18 2YB sing 39 n y C20 C21 2YB sing 40 n y C18 C17 2YB doub 41 n y C21 C22 2YB sing 42 n n C21 C38 2YB doub 43 n y C17 C38 2YB sing 44 n y C17 C16 2YB sing 45 n n C1 C2 2YB sing 46 n n C22 O23 2YB sing 47 n n C16 C2 2YB doub 48 n y C16 C14 2YB sing 49 n y C2 C3 2YB sing 50 n y O23 C24 2YB sing 51 n n C15 C14 2YB sing 52 n n C14 C13 2YB doub 53 n y C3 C4 2YB doub 54 n y C24 C25 2YB doub 55 n y C24 C37 2YB sing 56 n y C25 C26 2YB sing 57 n y O33 C31 2YB doub 58 n n C37 C36 2YB doub 59 n y C13 C4 2YB sing 60 n y C4 O5 2YB sing 61 n n C30 C31 2YB sing 62 n n C30 C28 2YB sing 63 n n C26 C27 2YB doub 64 n y C36 C27 2YB sing 65 n y C36 O35 2YB sing 66 n n C31 O32 2YB sing 67 n n C27 C28 2YB sing 68 n n O5 C6 2YB sing 69 n n O35 C34 2YB sing 70 n n C6 C7 2YB sing 71 n n C28 C34 2YB sing 72 n n C7 C8 2YB sing 73 n n C10 S9 2YB sing 74 n n C8 S9 2YB sing 75 n n O11 S9 2YB doub 76 n n S9 O12 2YB doub 77 n n C6 H1 2YB sing 78 n n C6 H2 2YB sing 79 n n C7 H3 2YB sing 80 n n C7 H4 2YB sing 81 n n C8 H5 2YB sing 82 n n C8 H6 2YB sing 83 n n C10 H7 2YB sing 84 n n C10 H8 2YB sing 85 n n C10 H9 2YB sing 86 n n C13 H10 2YB sing 87 n n C15 H11 2YB sing 88 n n C15 H12 2YB sing 89 n n C15 H13 2YB sing 90 n n C20 H14 2YB sing 91 n n C22 H15 2YB sing 92 n n C22 H16 2YB sing 93 n n C26 H17 2YB sing 94 n n C28 H18 2YB sing 95 n n C1 H19 2YB sing 96 n n C1 H20 2YB sing 97 n n C1 H21 2YB sing 98 n n C3 H22 2YB sing 99 n n C18 H23 2YB sing 100 n n C19 H24 2YB sing 101 n n C25 H25 2YB sing 102 n n C30 H26 2YB sing 103 n n C30 H27 2YB sing 104 n n O32 H28 2YB sing 105 n n C34 H29 2YB sing 106 n n C34 H30 2YB sing 107 n n C37 H31 2YB sing 108 n n C38 H32 2YB sing 109 n n # _atom_sites.entry_id 4PHU _atom_sites.fract_transf_matrix[1][1] 0.009901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00339 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2YB A 1 2401 1500 2YB LIG . C 3 OLC A 1 2402 1501 OLC OLC . D 3 OLC A 1 2403 1502 OLC OLC . E 3 OLC A 1 2404 1503 OLC OLC . F 3 OLC A 1 2405 1504 OLC OLC . G 3 OLC A 1 2406 1505 OLC OLC . H 4 1PE A 1 2407 1506 1PE 1PE . I 5 DMS A 1 2408 1507 DMS DMS . J 6 HOH A 1 2501 1 HOH HOH . J 6 HOH A 2 2502 73 HOH HOH . J 6 HOH A 3 2503 50 HOH HOH . J 6 HOH A 4 2504 34 HOH HOH . J 6 HOH A 5 2505 41 HOH HOH . J 6 HOH A 6 2506 52 HOH HOH . J 6 HOH A 7 2507 20 HOH HOH . J 6 HOH A 8 2508 35 HOH HOH . J 6 HOH A 9 2509 19 HOH HOH . J 6 HOH A 10 2510 59 HOH HOH . J 6 HOH A 11 2511 81 HOH HOH . J 6 HOH A 12 2512 38 HOH HOH . J 6 HOH A 13 2513 26 HOH HOH . J 6 HOH A 14 2514 16 HOH HOH . J 6 HOH A 15 2515 68 HOH HOH . J 6 HOH A 16 2516 88 HOH HOH . J 6 HOH A 17 2517 23 HOH HOH . J 6 HOH A 18 2518 79 HOH HOH . J 6 HOH A 19 2519 51 HOH HOH . J 6 HOH A 20 2520 22 HOH HOH . J 6 HOH A 21 2521 74 HOH HOH . J 6 HOH A 22 2522 66 HOH HOH . J 6 HOH A 23 2523 58 HOH HOH . J 6 HOH A 24 2524 80 HOH HOH . J 6 HOH A 25 2525 57 HOH HOH . J 6 HOH A 26 2526 2 HOH HOH . J 6 HOH A 27 2527 3 HOH HOH . J 6 HOH A 28 2528 4 HOH HOH . J 6 HOH A 29 2529 5 HOH HOH . J 6 HOH A 30 2530 6 HOH HOH . J 6 HOH A 31 2531 7 HOH HOH . J 6 HOH A 32 2532 8 HOH HOH . J 6 HOH A 33 2533 9 HOH HOH . J 6 HOH A 34 2534 10 HOH HOH . J 6 HOH A 35 2535 11 HOH HOH . J 6 HOH A 36 2536 12 HOH HOH . J 6 HOH A 37 2537 13 HOH HOH . J 6 HOH A 38 2538 14 HOH HOH . J 6 HOH A 39 2539 15 HOH HOH . J 6 HOH A 40 2540 17 HOH HOH . J 6 HOH A 41 2541 18 HOH HOH . J 6 HOH A 42 2542 21 HOH HOH . J 6 HOH A 43 2543 24 HOH HOH . J 6 HOH A 44 2544 25 HOH HOH . J 6 HOH A 45 2545 27 HOH HOH . J 6 HOH A 46 2546 28 HOH HOH . J 6 HOH A 47 2547 29 HOH HOH . J 6 HOH A 48 2548 30 HOH HOH . J 6 HOH A 49 2549 31 HOH HOH . J 6 HOH A 50 2550 32 HOH HOH . J 6 HOH A 51 2551 33 HOH HOH . J 6 HOH A 52 2552 36 HOH HOH . J 6 HOH A 53 2553 37 HOH HOH . J 6 HOH A 54 2554 39 HOH HOH . J 6 HOH A 55 2555 40 HOH HOH . J 6 HOH A 56 2556 42 HOH HOH . J 6 HOH A 57 2557 43 HOH HOH . J 6 HOH A 58 2558 44 HOH HOH . J 6 HOH A 59 2559 45 HOH HOH . J 6 HOH A 60 2560 46 HOH HOH . J 6 HOH A 61 2561 47 HOH HOH . J 6 HOH A 62 2562 48 HOH HOH . J 6 HOH A 63 2563 49 HOH HOH . J 6 HOH A 64 2564 53 HOH HOH . J 6 HOH A 65 2565 54 HOH HOH . J 6 HOH A 66 2566 55 HOH HOH . J 6 HOH A 67 2567 56 HOH HOH . J 6 HOH A 68 2568 60 HOH HOH . J 6 HOH A 69 2569 61 HOH HOH . J 6 HOH A 70 2570 62 HOH HOH . J 6 HOH A 71 2571 63 HOH HOH . J 6 HOH A 72 2572 64 HOH HOH . J 6 HOH A 73 2573 65 HOH HOH . J 6 HOH A 74 2574 67 HOH HOH . J 6 HOH A 75 2575 69 HOH HOH . J 6 HOH A 76 2576 70 HOH HOH . J 6 HOH A 77 2577 71 HOH HOH . J 6 HOH A 78 2578 72 HOH HOH . J 6 HOH A 79 2579 75 HOH HOH . J 6 HOH A 80 2580 76 HOH HOH . J 6 HOH A 81 2581 77 HOH HOH . J 6 HOH A 82 2582 78 HOH HOH . J 6 HOH A 83 2583 82 HOH HOH . J 6 HOH A 84 2584 83 HOH HOH . J 6 HOH A 85 2585 84 HOH HOH . J 6 HOH A 86 2586 85 HOH HOH . J 6 HOH A 87 2587 86 HOH HOH . J 6 HOH A 88 2588 87 HOH HOH . J 6 HOH A 89 2589 89 HOH HOH . J 6 HOH A 90 2590 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 2YB . . . B 2 -54.997 -0.871 59.686 1 45.2 ? C4 2YB 2401 A 1 HETATM 2 C C6 2YB . . . B 2 -56.344 0.857 60.702 1 59.39 ? C6 2YB 2401 A 1 HETATM 3 C C7 2YB . . . B 2 -57.779 1.002 61.205 1 66.22 ? C7 2YB 2401 A 1 HETATM 4 C C8 2YB . . . B 2 -57.736 1.058 62.732 1 77.82 ? C8 2YB 2401 A 1 HETATM 5 C C10 2YB . . . B 2 -60.581 1.275 62.705 1 79.82 ? C10 2YB 2401 A 1 HETATM 6 C C13 2YB . . . B 2 -54.633 -2.207 59.599 1 41.29 ? C13 2YB 2401 A 1 HETATM 7 C C15 2YB . . . B 2 -53.178 -4.055 58.816 1 35.64 ? C15 2YB 2401 A 1 HETATM 8 C C17 2YB . . . B 2 -51.576 -2.001 57.399 1 38.29 ? C17 2YB 2401 A 1 HETATM 9 C C20 2YB . . . B 2 -49.272 -2.714 56.014 1 36.05 ? C20 2YB 2401 A 1 HETATM 10 C C21 2YB . . . B 2 -49.155 -2.082 57.245 1 38.34 ? C21 2YB 2401 A 1 HETATM 11 C C22 2YB . . . B 2 -47.784 -1.791 57.818 1 38.39 ? C22 2YB 2401 A 1 HETATM 12 C C24 2YB . . . B 2 -46.108 -2.989 59.147 1 37.96 ? C24 2YB 2401 A 1 HETATM 13 C C26 2YB . . . B 2 -44.033 -1.985 59.809 1 38.27 ? C26 2YB 2401 A 1 HETATM 14 C C28 2YB . . . B 2 -42.246 -3.612 60.817 1 38.35 ? C28 2YB 2401 A 1 HETATM 15 C C1 2YB . . . B 2 -52.391 0.844 57.556 1 37.23 ? C1 2YB 2401 A 1 HETATM 16 C C2 2YB . . . B 2 -53.153 -0.256 58.262 1 40.87 ? C2 2YB 2401 A 1 HETATM 17 C C3 2YB . . . B 2 -54.253 0.097 59.014 1 43.81 ? C3 2YB 2401 A 1 HETATM 18 O O5 2YB . . . B 2 -56.09 -0.531 60.425 1 51.26 ? O5 2YB 2401 A 1 HETATM 19 S S9 2YB . . . B 2 -59.229 0.337 63.485 1 87.9 ? S9 2YB 2401 A 1 HETATM 20 O O11 2YB . . . B 2 -59.343 -1.034 63.108 1 79.67 -1 O11 2YB 2401 A 1 HETATM 21 O O12 2YB . . . B 2 -59.177 0.665 64.873 1 81.78 -1 O12 2YB 2401 A 1 HETATM 22 C C14 2YB . . . B 2 -53.53 -2.582 58.862 1 38.88 ? C14 2YB 2401 A 1 HETATM 23 C C16 2YB . . . B 2 -52.779 -1.608 58.184 1 38.27 ? C16 2YB 2401 A 1 HETATM 24 C C18 2YB . . . B 2 -51.686 -2.629 56.152 1 36.28 ? C18 2YB 2401 A 1 HETATM 25 C C19 2YB . . . B 2 -50.53 -2.979 55.476 1 36.91 ? C19 2YB 2401 A 1 HETATM 26 O O23 2YB . . . B 2 -47.36 -2.908 58.618 1 40.7 ? O23 2YB 2401 A 1 HETATM 27 C C25 2YB . . . B 2 -45.308 -1.855 59.273 1 38.75 ? C25 2YB 2401 A 1 HETATM 28 C C27 2YB . . . B 2 -43.569 -3.214 60.219 1 35.87 ? C27 2YB 2401 A 1 HETATM 29 C C30 2YB . . . B 2 -41.221 -3.391 59.709 1 39.16 ? C30 2YB 2401 A 1 HETATM 30 C C31 2YB . . . B 2 -39.802 -3.304 60.195 1 41.81 ? C31 2YB 2401 A 1 HETATM 31 O O32 2YB . . . B 2 -39.435 -3.002 61.467 1 35.89 ? O32 2YB 2401 A 1 HETATM 32 O O33 2YB . . . B 2 -38.974 -3.532 59.343 1 46.33 -1 O33 2YB 2401 A 1 HETATM 33 C C34 2YB . . . B 2 -42.431 -5.117 61.153 1 38.72 ? C34 2YB 2401 A 1 HETATM 34 O O35 2YB . . . B 2 -43.698 -5.466 60.548 1 38.54 ? O35 2YB 2401 A 1 HETATM 35 C C36 2YB . . . B 2 -44.348 -4.355 60.098 1 36.94 ? C36 2YB 2401 A 1 HETATM 36 C C37 2YB . . . B 2 -45.633 -4.231 59.564 1 38 ? C37 2YB 2401 A 1 HETATM 37 C C38 2YB . . . B 2 -50.304 -1.733 57.95 1 37.39 ? C38 2YB 2401 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 413 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #