data_4PHU # _model_server_result.job_id uW-45w5_nGcbToaysz_6VA _model_server_result.datetime_utc '2024-11-21 13:57:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4phu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2402}' # _entry.id 4PHU # _exptl.entry_id 4PHU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.9 _cell.angle_gamma 90 _cell.entry_id 4PHU _cell.length_a 101 _cell.length_b 61.74 _cell.length_c 105.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PHU _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 79 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 183 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 170 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.091 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 355 n n C10 C9 OLC doub 356 n n C10 C11 OLC sing 357 n n C9 C8 OLC sing 358 n n C17 C16 OLC sing 359 z n C11 C12 OLC sing 360 n n C8 C7 OLC sing 361 n n C24 C22 OLC sing 362 n n C24 O25 OLC sing 363 n n C16 C15 OLC sing 364 n n C12 C13 OLC sing 365 n n C7 C6 OLC sing 366 n n C15 C14 OLC sing 367 n n C13 C14 OLC sing 368 n n C6 C5 OLC sing 369 n n C5 C4 OLC sing 370 n n C4 C3 OLC sing 371 n n C3 C2 OLC sing 372 n n C2 C1 OLC sing 373 n n C21 C22 OLC sing 374 n n C21 O20 OLC sing 375 n n C1 O19 OLC doub 376 n n C1 O20 OLC sing 377 n n C22 O23 OLC sing 378 n n C18 H18 OLC sing 379 n n C18 H18A OLC sing 380 n n C18 H18B OLC sing 381 n n C10 H10 OLC sing 382 n n C9 H9 OLC sing 383 n n C17 H17 OLC sing 384 n n C17 H17A OLC sing 385 n n C11 H11 OLC sing 386 n n C11 H11A OLC sing 387 n n C8 H8 OLC sing 388 n n C8 H8A OLC sing 389 n n C24 H24 OLC sing 390 n n C24 H24A OLC sing 391 n n C16 H16 OLC sing 392 n n C16 H16A OLC sing 393 n n C12 H12 OLC sing 394 n n C12 H12A OLC sing 395 n n C7 H7 OLC sing 396 n n C7 H7A OLC sing 397 n n C15 H15 OLC sing 398 n n C15 H15A OLC sing 399 n n C13 H13 OLC sing 400 n n C13 H13A OLC sing 401 n n C6 H6 OLC sing 402 n n C6 H6A OLC sing 403 n n C14 H14 OLC sing 404 n n C14 H14A OLC sing 405 n n C5 H5 OLC sing 406 n n C5 H5A OLC sing 407 n n C4 H4 OLC sing 408 n n C4 H4A OLC sing 409 n n C3 H3 OLC sing 410 n n C3 H3A OLC sing 411 n n C2 H2 OLC sing 412 n n C2 H2A OLC sing 413 n n C21 H21 OLC sing 414 n n C21 H21A OLC sing 415 n n C22 H22 OLC sing 416 n n O25 HO25 OLC sing 417 n n O23 HO23 OLC sing 418 n n # _atom_sites.entry_id 4PHU _atom_sites.fract_transf_matrix[1][1] 0.009901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00339 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2YB A 1 2401 1500 2YB LIG . C 3 OLC A 1 2402 1501 OLC OLC . D 3 OLC A 1 2403 1502 OLC OLC . E 3 OLC A 1 2404 1503 OLC OLC . F 3 OLC A 1 2405 1504 OLC OLC . G 3 OLC A 1 2406 1505 OLC OLC . H 4 1PE A 1 2407 1506 1PE 1PE . I 5 DMS A 1 2408 1507 DMS DMS . J 6 HOH A 1 2501 1 HOH HOH . J 6 HOH A 2 2502 73 HOH HOH . J 6 HOH A 3 2503 50 HOH HOH . J 6 HOH A 4 2504 34 HOH HOH . J 6 HOH A 5 2505 41 HOH HOH . J 6 HOH A 6 2506 52 HOH HOH . J 6 HOH A 7 2507 20 HOH HOH . J 6 HOH A 8 2508 35 HOH HOH . J 6 HOH A 9 2509 19 HOH HOH . J 6 HOH A 10 2510 59 HOH HOH . J 6 HOH A 11 2511 81 HOH HOH . J 6 HOH A 12 2512 38 HOH HOH . J 6 HOH A 13 2513 26 HOH HOH . J 6 HOH A 14 2514 16 HOH HOH . J 6 HOH A 15 2515 68 HOH HOH . J 6 HOH A 16 2516 88 HOH HOH . J 6 HOH A 17 2517 23 HOH HOH . J 6 HOH A 18 2518 79 HOH HOH . J 6 HOH A 19 2519 51 HOH HOH . J 6 HOH A 20 2520 22 HOH HOH . J 6 HOH A 21 2521 74 HOH HOH . J 6 HOH A 22 2522 66 HOH HOH . J 6 HOH A 23 2523 58 HOH HOH . J 6 HOH A 24 2524 80 HOH HOH . J 6 HOH A 25 2525 57 HOH HOH . J 6 HOH A 26 2526 2 HOH HOH . J 6 HOH A 27 2527 3 HOH HOH . J 6 HOH A 28 2528 4 HOH HOH . J 6 HOH A 29 2529 5 HOH HOH . J 6 HOH A 30 2530 6 HOH HOH . J 6 HOH A 31 2531 7 HOH HOH . J 6 HOH A 32 2532 8 HOH HOH . J 6 HOH A 33 2533 9 HOH HOH . J 6 HOH A 34 2534 10 HOH HOH . J 6 HOH A 35 2535 11 HOH HOH . J 6 HOH A 36 2536 12 HOH HOH . J 6 HOH A 37 2537 13 HOH HOH . J 6 HOH A 38 2538 14 HOH HOH . J 6 HOH A 39 2539 15 HOH HOH . J 6 HOH A 40 2540 17 HOH HOH . J 6 HOH A 41 2541 18 HOH HOH . J 6 HOH A 42 2542 21 HOH HOH . J 6 HOH A 43 2543 24 HOH HOH . J 6 HOH A 44 2544 25 HOH HOH . J 6 HOH A 45 2545 27 HOH HOH . J 6 HOH A 46 2546 28 HOH HOH . J 6 HOH A 47 2547 29 HOH HOH . J 6 HOH A 48 2548 30 HOH HOH . J 6 HOH A 49 2549 31 HOH HOH . J 6 HOH A 50 2550 32 HOH HOH . J 6 HOH A 51 2551 33 HOH HOH . J 6 HOH A 52 2552 36 HOH HOH . J 6 HOH A 53 2553 37 HOH HOH . J 6 HOH A 54 2554 39 HOH HOH . J 6 HOH A 55 2555 40 HOH HOH . J 6 HOH A 56 2556 42 HOH HOH . J 6 HOH A 57 2557 43 HOH HOH . J 6 HOH A 58 2558 44 HOH HOH . J 6 HOH A 59 2559 45 HOH HOH . J 6 HOH A 60 2560 46 HOH HOH . J 6 HOH A 61 2561 47 HOH HOH . J 6 HOH A 62 2562 48 HOH HOH . J 6 HOH A 63 2563 49 HOH HOH . J 6 HOH A 64 2564 53 HOH HOH . J 6 HOH A 65 2565 54 HOH HOH . J 6 HOH A 66 2566 55 HOH HOH . J 6 HOH A 67 2567 56 HOH HOH . J 6 HOH A 68 2568 60 HOH HOH . J 6 HOH A 69 2569 61 HOH HOH . J 6 HOH A 70 2570 62 HOH HOH . J 6 HOH A 71 2571 63 HOH HOH . J 6 HOH A 72 2572 64 HOH HOH . J 6 HOH A 73 2573 65 HOH HOH . J 6 HOH A 74 2574 67 HOH HOH . J 6 HOH A 75 2575 69 HOH HOH . J 6 HOH A 76 2576 70 HOH HOH . J 6 HOH A 77 2577 71 HOH HOH . J 6 HOH A 78 2578 72 HOH HOH . J 6 HOH A 79 2579 75 HOH HOH . J 6 HOH A 80 2580 76 HOH HOH . J 6 HOH A 81 2581 77 HOH HOH . J 6 HOH A 82 2582 78 HOH HOH . J 6 HOH A 83 2583 82 HOH HOH . J 6 HOH A 84 2584 83 HOH HOH . J 6 HOH A 85 2585 84 HOH HOH . J 6 HOH A 86 2586 85 HOH HOH . J 6 HOH A 87 2587 86 HOH HOH . J 6 HOH A 88 2588 87 HOH HOH . J 6 HOH A 89 2589 89 HOH HOH . J 6 HOH A 90 2590 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . C 3 -34.654 -16.893 49.169 1 51.81 ? C18 OLC 2402 A 1 HETATM 2 C C10 OLC . . . C 3 -37.737 -17.16 58.39 1 53.47 ? C10 OLC 2402 A 1 HETATM 3 C C9 OLC . . . C 3 -38.343 -17.843 59.363 1 56.28 ? C9 OLC 2402 A 1 HETATM 4 C C17 OLC . . . C 3 -35.146 -16.213 50.434 1 50.88 ? C17 OLC 2402 A 1 HETATM 5 C C11 OLC . . . C 3 -37.374 -17.85 57.1 1 51.72 ? C11 OLC 2402 A 1 HETATM 6 C C8 OLC . . . C 3 -38.703 -17.148 60.657 1 57.02 ? C8 OLC 2402 A 1 HETATM 7 C C16 OLC . . . C 3 -36.024 -17.125 51.286 1 49.96 ? C16 OLC 2402 A 1 HETATM 8 C C12 OLC . . . C 3 -37.46 -16.898 55.916 1 49.95 ? C12 OLC 2402 A 1 HETATM 9 C C7 OLC . . . C 3 -38.898 -18.151 61.799 1 58.53 ? C7 OLC 2402 A 1 HETATM 10 C C15 OLC . . . C 3 -36.702 -16.334 52.4 1 48.9 ? C15 OLC 2402 A 1 HETATM 11 C C13 OLC . . . C 3 -36.739 -17.475 54.696 1 48.74 ? C13 OLC 2402 A 1 HETATM 12 C C6 OLC . . . C 3 -37.969 -17.872 62.98 1 58.73 ? C6 OLC 2402 A 1 HETATM 13 C C14 OLC . . . C 3 -37.473 -17.227 53.371 1 48.49 ? C14 OLC 2402 A 1 HETATM 14 C C5 OLC . . . C 3 -38.567 -18.266 64.325 1 58.07 ? C5 OLC 2402 A 1 HETATM 15 C C4 OLC . . . C 3 -37.534 -18.13 65.44 1 58.65 ? C4 OLC 2402 A 1 HETATM 16 C C3 OLC . . . C 3 -38.146 -17.525 66.696 1 60.49 ? C3 OLC 2402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #