data_4PIS # _model_server_result.job_id VDclc8GNi-4TCCSjKbYhnA _model_server_result.datetime_utc '2024-12-19 15:34:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4PIS # _exptl.entry_id 4PIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(2R)-2-(3,5-dichlorophenyl)-2-(dimethylamino)acetyl]-N-({2-[(Z)-iminomethyl]pyrimidin-4-yl}methyl)-L-isoleucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PIS _cell.length_a 42.061 _cell.length_b 42.061 _cell.length_c 193.238 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 B SG CYS 10 B CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A SG CYS 122 A CYS 122 1_555 C C31 3FU . A 3FU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? # _chem_comp.formula 'C22 H28 Cl2 N6 O2' _chem_comp.formula_weight 479.403 _chem_comp.id 3FU _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(2R)-2-(3,5-dichlorophenyl)-2-(dimethylamino)acetyl]-N-({2-[(Z)-iminomethyl]pyrimidin-4-yl}methyl)-L-isoleucinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N32 C31 3FU doub 1 n n N28 C29 3FU doub 2 n y N28 C27 3FU sing 3 n y C29 C30 3FU sing 4 n y C31 C27 3FU sing 5 n n C27 N26 3FU doub 6 n y C30 C25 3FU doub 7 n y N26 C25 3FU sing 8 n y C25 C24 3FU sing 9 n n C19 C18 3FU sing 10 n n C24 N6 3FU sing 11 n n C18 C5 3FU sing 12 n n N6 C1 3FU sing 13 n n C5 C20 3FU sing 14 n n C5 C2 3FU sing 15 n n C1 C2 3FU sing 16 n n C1 O4 3FU doub 17 n n C2 N3 3FU sing 18 n n N3 C7 3FU sing 19 n n C7 O17 3FU doub 20 n n C7 C8 3FU sing 21 n n C22 N21 3FU sing 22 n n N21 C8 3FU sing 23 n n N21 C23 3FU sing 24 n n CL2 C13 3FU sing 25 n n C14 C13 3FU doub 26 n y C14 C9 3FU sing 27 n y C8 C9 3FU sing 28 n n C13 C12 3FU sing 29 n y C9 C10 3FU doub 30 n y C12 C11 3FU doub 31 n y C10 C11 3FU sing 32 n y C11 CL1 3FU sing 33 n n C2 H1 3FU sing 34 n n C12 H2 3FU sing 35 n n C14 H3 3FU sing 36 n n C18 H4 3FU sing 37 n n C18 H5 3FU sing 38 n n C19 H6 3FU sing 39 n n C19 H7 3FU sing 40 n n C19 H8 3FU sing 41 n n C20 H9 3FU sing 42 n n C20 H10 3FU sing 43 n n C20 H11 3FU sing 44 n n C22 H12 3FU sing 45 n n C22 H13 3FU sing 46 n n C22 H14 3FU sing 47 n n C23 H15 3FU sing 48 n n C23 H16 3FU sing 49 n n C23 H17 3FU sing 50 n n C24 H18 3FU sing 51 n n C24 H19 3FU sing 52 n n C29 H20 3FU sing 53 n n C30 H21 3FU sing 54 n n N3 H22 3FU sing 55 n n C5 H23 3FU sing 56 n n N6 H24 3FU sing 57 n n C8 H25 3FU sing 58 n n C10 H26 3FU sing 59 n n C31 H28 3FU sing 60 n n N32 H29 3FU sing 61 n n # _atom_sites.entry_id 4PIS _atom_sites.fract_transf_matrix[1][1] 0.023775 _atom_sites.fract_transf_matrix[1][2] 0.013726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3FU A 1 301 1 3FU LI1 . D 4 HOH A 1 401 29 HOH HOH . D 4 HOH A 2 402 8 HOH HOH . D 4 HOH A 3 403 6 HOH HOH . D 4 HOH A 4 404 30 HOH HOH . D 4 HOH A 5 405 1 HOH HOH . D 4 HOH A 6 406 2 HOH HOH . D 4 HOH A 7 407 3 HOH HOH . D 4 HOH A 8 408 4 HOH HOH . D 4 HOH A 9 409 5 HOH HOH . D 4 HOH A 10 410 9 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 16 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 21 HOH HOH . D 4 HOH A 21 421 22 HOH HOH . D 4 HOH A 22 422 23 HOH HOH . D 4 HOH A 23 423 24 HOH HOH . D 4 HOH A 24 424 25 HOH HOH . D 4 HOH A 25 425 26 HOH HOH . D 4 HOH A 26 426 27 HOH HOH . D 4 HOH A 27 427 28 HOH HOH . D 4 HOH A 28 428 31 HOH HOH . D 4 HOH A 29 429 32 HOH HOH . E 4 HOH B 1 401 7 HOH HOH . E 4 HOH B 2 402 10 HOH HOH . E 4 HOH B 3 403 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 3FU . . . C 3 -38.091 17.59 -12.492 1 62.59 ? C11 3FU 301 A 1 HETATM 2 C C12 3FU . . . C 3 -37.467 18.702 -13.096 1 60.78 ? C12 3FU 301 A 1 HETATM 3 C C13 3FU . . . C 3 -37.984 19.218 -14.302 1 60.1 ? C13 3FU 301 A 1 HETATM 4 C C14 3FU . . . C 3 -39.116 18.609 -14.897 1 62.12 ? C14 3FU 301 A 1 HETATM 5 C C22 3FU . . . C 3 -43.278 16.885 -15.729 1 67.43 ? C22 3FU 301 A 1 HETATM 6 C C23 3FU . . . C 3 -42.408 18.816 -14.547 1 66.65 ? C23 3FU 301 A 1 HETATM 7 C C7 3FU . . . C 3 -40.36 15.741 -15.771 1 61.42 ? C7 3FU 301 A 1 HETATM 8 C C8 3FU . . . C 3 -40.972 16.741 -14.803 1 64.58 ? C8 3FU 301 A 1 HETATM 9 C C9 3FU . . . C 3 -39.734 17.49 -14.279 1 63.33 ? C9 3FU 301 A 1 HETATM 10 C C10 3FU . . . C 3 -39.205 16.995 -13.083 1 63.27 ? C10 3FU 301 A 1 HETATM 11 CL CL1 3FU . . . C 3 -37.485 16.842 -11.037 1 63.43 ? CL1 3FU 301 A 1 HETATM 12 CL CL2 3FU . . . C 3 -37.241 20.635 -15.029 1 57.57 ? CL2 3FU 301 A 1 HETATM 13 O O17 3FU . . . C 3 -40.089 14.641 -15.298 1 59.18 ? O17 3FU 301 A 1 HETATM 14 N N21 3FU . . . C 3 -42.031 17.635 -15.386 1 67.07 ? N21 3FU 301 A 1 HETATM 15 N N3 3FU . . . C 3 -40.144 16.097 -17.073 1 62.49 ? N3 3FU 301 A 1 HETATM 16 C C2 3FU . . . C 3 -39.537 15.222 -18.104 1 61.89 ? C2 3FU 301 A 1 HETATM 17 C C1 3FU . . . C 3 -38.249 15.837 -18.661 1 61.4 ? C1 3FU 301 A 1 HETATM 18 O O4 3FU . . . C 3 -37.763 16.813 -18.094 1 62.38 ? O4 3FU 301 A 1 HETATM 19 C C5 3FU . . . C 3 -40.553 14.832 -19.245 1 59.63 ? C5 3FU 301 A 1 HETATM 20 C C18 3FU . . . C 3 -41.39 16.013 -19.841 1 59.88 ? C18 3FU 301 A 1 HETATM 21 C C20 3FU . . . C 3 -41.48 13.689 -18.748 1 58.45 ? C20 3FU 301 A 1 HETATM 22 C C19 3FU . . . C 3 -40.712 16.822 -20.982 1 59.28 ? C19 3FU 301 A 1 HETATM 23 C C24 3FU . . . C 3 -36.448 15.887 -20.307 1 55.65 ? C24 3FU 301 A 1 HETATM 24 C C25 3FU . . . C 3 -36.141 15.279 -21.677 1 55.03 ? C25 3FU 301 A 1 HETATM 25 C C27 3FU . . . C 3 -34.613 14.067 -23.034 1 52.78 ? C27 3FU 301 A 1 HETATM 26 C C29 3FU . . . C 3 -36.655 14.818 -23.988 1 54.15 ? C29 3FU 301 A 1 HETATM 27 C C30 3FU . . . C 3 -37.025 15.408 -22.765 1 55.13 ? C30 3FU 301 A 1 HETATM 28 N N6 3FU . . . C 3 -37.664 15.297 -19.762 1 57.5 ? N6 3FU 301 A 1 HETATM 29 N N26 3FU . . . C 3 -34.957 14.643 -21.843 1 53.99 ? N26 3FU 301 A 1 HETATM 30 N N28 3FU . . . C 3 -35.471 14.152 -24.093 1 53.14 ? N28 3FU 301 A 1 HETATM 31 C C31 3FU . . . C 3 -33.331 13.391 -23.18 1 46.41 ? C31 3FU 301 A 1 HETATM 32 N N32 3FU . . . C 3 -32.636 13.433 -24.288 1 42.93 ? N32 3FU 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 781 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 32 #