data_4PIY # _model_server_result.job_id 9FXw_BbcFfM6HuzR_PjltA _model_server_result.datetime_utc '2024-11-02 03:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4piy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4PIY # _exptl.entry_id 4PIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.185 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-AMINO-4-MERCAPTO-BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PIY _cell.length_a 57.6 _cell.length_b 57.6 _cell.length_c 122.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PIY _symmetry.cell_setting . _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc2 A NE2 HIS 88 A HIS 88 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 A NE2 HIS 140 A HIS 140 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 B FE FE . A FE 501 1_555 C SD HCS . A HCS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'C4 H9 N O2 S' _chem_comp.formula_weight 135.185 _chem_comp.id HCS _chem_comp.mon_nstd_flag . _chem_comp.name '2-AMINO-4-MERCAPTO-BUTYRIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms L-Homocysteine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HCS sing 129 n n N H HCS sing 130 n n N H2 HCS sing 131 n n CA CB HCS sing 132 n n CA C HCS sing 133 n n CA HA HCS sing 134 n n CB CG HCS sing 135 n n CB HB2 HCS sing 136 n n CB HB3 HCS sing 137 n n CG SD HCS sing 138 n n CG HG2 HCS sing 139 n n CG HG3 HCS sing 140 n n SD HD HCS sing 141 n n C OXT HCS sing 142 n n C O HCS doub 143 n n OXT HXT HCS sing 144 n n # _atom_sites.entry_id 4PIY _atom_sites.fract_transf_matrix[1][1] 0.017361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 501 501 FE FE . C 3 HCS A 1 502 1 HCS HCS . D 4 HOH A 1 601 216 HOH HOH . D 4 HOH A 2 602 52 HOH HOH . D 4 HOH A 3 603 221 HOH HOH . D 4 HOH A 4 604 93 HOH HOH . D 4 HOH A 5 605 231 HOH HOH . D 4 HOH A 6 606 56 HOH HOH . D 4 HOH A 7 607 226 HOH HOH . D 4 HOH A 8 608 136 HOH HOH . D 4 HOH A 9 609 55 HOH HOH . D 4 HOH A 10 610 69 HOH HOH . D 4 HOH A 11 611 16 HOH HOH . D 4 HOH A 12 612 23 HOH HOH . D 4 HOH A 13 613 184 HOH HOH . D 4 HOH A 14 614 34 HOH HOH . D 4 HOH A 15 615 36 HOH HOH . D 4 HOH A 16 616 99 HOH HOH . D 4 HOH A 17 617 46 HOH HOH . D 4 HOH A 18 618 104 HOH HOH . D 4 HOH A 19 619 235 HOH HOH . D 4 HOH A 20 620 60 HOH HOH . D 4 HOH A 21 621 237 HOH HOH . D 4 HOH A 22 622 178 HOH HOH . D 4 HOH A 23 623 248 HOH HOH . D 4 HOH A 24 624 22 HOH HOH . D 4 HOH A 25 625 78 HOH HOH . D 4 HOH A 26 626 31 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 225 HOH HOH . D 4 HOH A 29 629 91 HOH HOH . D 4 HOH A 30 630 259 HOH HOH . D 4 HOH A 31 631 238 HOH HOH . D 4 HOH A 32 632 204 HOH HOH . D 4 HOH A 33 633 90 HOH HOH . D 4 HOH A 34 634 17 HOH HOH . D 4 HOH A 35 635 114 HOH HOH . D 4 HOH A 36 636 115 HOH HOH . D 4 HOH A 37 637 5 HOH HOH . D 4 HOH A 38 638 186 HOH HOH . D 4 HOH A 39 639 173 HOH HOH . D 4 HOH A 40 640 101 HOH HOH . D 4 HOH A 41 641 265 HOH HOH . D 4 HOH A 42 642 161 HOH HOH . D 4 HOH A 43 643 254 HOH HOH . D 4 HOH A 44 644 72 HOH HOH . D 4 HOH A 45 645 62 HOH HOH . D 4 HOH A 46 646 125 HOH HOH . D 4 HOH A 47 647 2 HOH HOH . D 4 HOH A 48 648 38 HOH HOH . D 4 HOH A 49 649 273 HOH HOH . D 4 HOH A 50 650 276 HOH HOH . D 4 HOH A 51 651 177 HOH HOH . D 4 HOH A 52 652 106 HOH HOH . D 4 HOH A 53 653 86 HOH HOH . D 4 HOH A 54 654 6 HOH HOH . D 4 HOH A 55 655 153 HOH HOH . D 4 HOH A 56 656 10 HOH HOH . D 4 HOH A 57 657 8 HOH HOH . D 4 HOH A 58 658 267 HOH HOH . D 4 HOH A 59 659 112 HOH HOH . D 4 HOH A 60 660 111 HOH HOH . D 4 HOH A 61 661 71 HOH HOH . D 4 HOH A 62 662 162 HOH HOH . D 4 HOH A 63 663 203 HOH HOH . D 4 HOH A 64 664 65 HOH HOH . D 4 HOH A 65 665 200 HOH HOH . D 4 HOH A 66 666 257 HOH HOH . D 4 HOH A 67 667 120 HOH HOH . D 4 HOH A 68 668 94 HOH HOH . D 4 HOH A 69 669 202 HOH HOH . D 4 HOH A 70 670 171 HOH HOH . D 4 HOH A 71 671 82 HOH HOH . D 4 HOH A 72 672 234 HOH HOH . D 4 HOH A 73 673 158 HOH HOH . D 4 HOH A 74 674 256 HOH HOH . D 4 HOH A 75 675 70 HOH HOH . D 4 HOH A 76 676 47 HOH HOH . D 4 HOH A 77 677 80 HOH HOH . D 4 HOH A 78 678 228 HOH HOH . D 4 HOH A 79 679 264 HOH HOH . D 4 HOH A 80 680 261 HOH HOH . D 4 HOH A 81 681 89 HOH HOH . D 4 HOH A 82 682 109 HOH HOH . D 4 HOH A 83 683 149 HOH HOH . D 4 HOH A 84 684 227 HOH HOH . D 4 HOH A 85 685 79 HOH HOH . D 4 HOH A 86 686 118 HOH HOH . D 4 HOH A 87 687 252 HOH HOH . D 4 HOH A 88 688 188 HOH HOH . D 4 HOH A 89 689 224 HOH HOH . D 4 HOH A 90 690 271 HOH HOH . D 4 HOH A 91 691 243 HOH HOH . D 4 HOH A 92 692 182 HOH HOH . D 4 HOH A 93 693 87 HOH HOH . D 4 HOH A 94 694 145 HOH HOH . D 4 HOH A 95 695 233 HOH HOH . D 4 HOH A 96 696 266 HOH HOH . D 4 HOH A 97 697 41 HOH HOH . D 4 HOH A 98 698 135 HOH HOH . D 4 HOH A 99 699 156 HOH HOH . D 4 HOH A 100 700 258 HOH HOH . D 4 HOH A 101 701 196 HOH HOH . D 4 HOH A 102 702 272 HOH HOH . D 4 HOH A 103 703 219 HOH HOH . D 4 HOH A 104 704 160 HOH HOH . D 4 HOH A 105 705 102 HOH HOH . D 4 HOH A 106 706 230 HOH HOH . D 4 HOH A 107 707 283 HOH HOH . D 4 HOH A 108 708 190 HOH HOH . D 4 HOH A 109 709 1 HOH HOH . D 4 HOH A 110 710 3 HOH HOH . D 4 HOH A 111 711 4 HOH HOH . D 4 HOH A 112 712 7 HOH HOH . D 4 HOH A 113 713 9 HOH HOH . D 4 HOH A 114 714 11 HOH HOH . D 4 HOH A 115 715 12 HOH HOH . D 4 HOH A 116 716 13 HOH HOH . D 4 HOH A 117 717 14 HOH HOH . D 4 HOH A 118 718 15 HOH HOH . D 4 HOH A 119 719 18 HOH HOH . D 4 HOH A 120 720 19 HOH HOH . D 4 HOH A 121 721 20 HOH HOH . D 4 HOH A 122 722 21 HOH HOH . D 4 HOH A 123 723 24 HOH HOH . D 4 HOH A 124 724 25 HOH HOH . D 4 HOH A 125 725 26 HOH HOH . D 4 HOH A 126 726 28 HOH HOH . D 4 HOH A 127 727 29 HOH HOH . D 4 HOH A 128 728 30 HOH HOH . D 4 HOH A 129 729 32 HOH HOH . D 4 HOH A 130 730 33 HOH HOH . D 4 HOH A 131 731 35 HOH HOH . D 4 HOH A 132 732 37 HOH HOH . D 4 HOH A 133 733 39 HOH HOH . D 4 HOH A 134 734 40 HOH HOH . D 4 HOH A 135 735 42 HOH HOH . D 4 HOH A 136 736 43 HOH HOH . D 4 HOH A 137 737 44 HOH HOH . D 4 HOH A 138 738 45 HOH HOH . D 4 HOH A 139 739 48 HOH HOH . D 4 HOH A 140 740 49 HOH HOH . D 4 HOH A 141 741 50 HOH HOH . D 4 HOH A 142 742 51 HOH HOH . D 4 HOH A 143 743 53 HOH HOH . D 4 HOH A 144 744 54 HOH HOH . D 4 HOH A 145 745 57 HOH HOH . D 4 HOH A 146 746 58 HOH HOH . D 4 HOH A 147 747 59 HOH HOH . D 4 HOH A 148 748 61 HOH HOH . D 4 HOH A 149 749 63 HOH HOH . D 4 HOH A 150 750 64 HOH HOH . D 4 HOH A 151 751 66 HOH HOH . D 4 HOH A 152 752 67 HOH HOH . D 4 HOH A 153 753 68 HOH HOH . D 4 HOH A 154 754 73 HOH HOH . D 4 HOH A 155 755 74 HOH HOH . D 4 HOH A 156 756 75 HOH HOH . D 4 HOH A 157 757 76 HOH HOH . D 4 HOH A 158 758 77 HOH HOH . D 4 HOH A 159 759 81 HOH HOH . D 4 HOH A 160 760 83 HOH HOH . D 4 HOH A 161 761 84 HOH HOH . D 4 HOH A 162 762 85 HOH HOH . D 4 HOH A 163 763 88 HOH HOH . D 4 HOH A 164 764 92 HOH HOH . D 4 HOH A 165 765 95 HOH HOH . D 4 HOH A 166 766 96 HOH HOH . D 4 HOH A 167 767 97 HOH HOH . D 4 HOH A 168 768 98 HOH HOH . D 4 HOH A 169 769 100 HOH HOH . D 4 HOH A 170 770 103 HOH HOH . D 4 HOH A 171 771 105 HOH HOH . D 4 HOH A 172 772 107 HOH HOH . D 4 HOH A 173 773 108 HOH HOH . D 4 HOH A 174 774 110 HOH HOH . D 4 HOH A 175 775 113 HOH HOH . D 4 HOH A 176 776 116 HOH HOH . D 4 HOH A 177 777 117 HOH HOH . D 4 HOH A 178 778 119 HOH HOH . D 4 HOH A 179 779 121 HOH HOH . D 4 HOH A 180 780 122 HOH HOH . D 4 HOH A 181 781 123 HOH HOH . D 4 HOH A 182 782 124 HOH HOH . D 4 HOH A 183 783 126 HOH HOH . D 4 HOH A 184 784 127 HOH HOH . D 4 HOH A 185 785 128 HOH HOH . D 4 HOH A 186 786 129 HOH HOH . D 4 HOH A 187 787 130 HOH HOH . D 4 HOH A 188 788 131 HOH HOH . D 4 HOH A 189 789 132 HOH HOH . D 4 HOH A 190 790 133 HOH HOH . D 4 HOH A 191 791 134 HOH HOH . D 4 HOH A 192 792 137 HOH HOH . D 4 HOH A 193 793 138 HOH HOH . D 4 HOH A 194 794 139 HOH HOH . D 4 HOH A 195 795 140 HOH HOH . D 4 HOH A 196 796 141 HOH HOH . D 4 HOH A 197 797 142 HOH HOH . D 4 HOH A 198 798 143 HOH HOH . D 4 HOH A 199 799 144 HOH HOH . D 4 HOH A 200 800 146 HOH HOH . D 4 HOH A 201 801 147 HOH HOH . D 4 HOH A 202 802 148 HOH HOH . D 4 HOH A 203 803 150 HOH HOH . D 4 HOH A 204 804 151 HOH HOH . D 4 HOH A 205 805 152 HOH HOH . D 4 HOH A 206 806 154 HOH HOH . D 4 HOH A 207 807 155 HOH HOH . D 4 HOH A 208 808 157 HOH HOH . D 4 HOH A 209 809 159 HOH HOH . D 4 HOH A 210 810 163 HOH HOH . D 4 HOH A 211 811 164 HOH HOH . D 4 HOH A 212 812 165 HOH HOH . D 4 HOH A 213 813 166 HOH HOH . D 4 HOH A 214 814 167 HOH HOH . D 4 HOH A 215 815 168 HOH HOH . D 4 HOH A 216 816 169 HOH HOH . D 4 HOH A 217 817 170 HOH HOH . D 4 HOH A 218 818 172 HOH HOH . D 4 HOH A 219 819 174 HOH HOH . D 4 HOH A 220 820 175 HOH HOH . D 4 HOH A 221 821 176 HOH HOH . D 4 HOH A 222 822 179 HOH HOH . D 4 HOH A 223 823 180 HOH HOH . D 4 HOH A 224 824 181 HOH HOH . D 4 HOH A 225 825 183 HOH HOH . D 4 HOH A 226 826 187 HOH HOH . D 4 HOH A 227 827 189 HOH HOH . D 4 HOH A 228 828 191 HOH HOH . D 4 HOH A 229 829 192 HOH HOH . D 4 HOH A 230 830 193 HOH HOH . D 4 HOH A 231 831 194 HOH HOH . D 4 HOH A 232 832 195 HOH HOH . D 4 HOH A 233 833 197 HOH HOH . D 4 HOH A 234 834 198 HOH HOH . D 4 HOH A 235 835 199 HOH HOH . D 4 HOH A 236 836 201 HOH HOH . D 4 HOH A 237 837 205 HOH HOH . D 4 HOH A 238 838 207 HOH HOH . D 4 HOH A 239 839 208 HOH HOH . D 4 HOH A 240 840 209 HOH HOH . D 4 HOH A 241 841 210 HOH HOH . D 4 HOH A 242 842 211 HOH HOH . D 4 HOH A 243 843 212 HOH HOH . D 4 HOH A 244 844 213 HOH HOH . D 4 HOH A 245 845 214 HOH HOH . D 4 HOH A 246 846 215 HOH HOH . D 4 HOH A 247 847 222 HOH HOH . D 4 HOH A 248 848 229 HOH HOH . D 4 HOH A 249 849 236 HOH HOH . D 4 HOH A 250 850 239 HOH HOH . D 4 HOH A 251 851 240 HOH HOH . D 4 HOH A 252 852 241 HOH HOH . D 4 HOH A 253 853 242 HOH HOH . D 4 HOH A 254 854 244 HOH HOH . D 4 HOH A 255 855 245 HOH HOH . D 4 HOH A 256 856 246 HOH HOH . D 4 HOH A 257 857 247 HOH HOH . D 4 HOH A 258 858 249 HOH HOH . D 4 HOH A 259 859 250 HOH HOH . D 4 HOH A 260 860 251 HOH HOH . D 4 HOH A 261 861 253 HOH HOH . D 4 HOH A 262 862 255 HOH HOH . D 4 HOH A 263 863 260 HOH HOH . D 4 HOH A 264 864 262 HOH HOH . D 4 HOH A 265 865 263 HOH HOH . D 4 HOH A 266 866 268 HOH HOH . D 4 HOH A 267 867 269 HOH HOH . D 4 HOH A 268 868 270 HOH HOH . D 4 HOH A 269 869 274 HOH HOH . D 4 HOH A 270 870 275 HOH HOH . D 4 HOH A 271 871 277 HOH HOH . D 4 HOH A 272 872 278 HOH HOH . D 4 HOH A 273 873 279 HOH HOH . D 4 HOH A 274 874 280 HOH HOH . D 4 HOH A 275 875 281 HOH HOH . D 4 HOH A 276 876 282 HOH HOH . D 4 HOH A 277 877 284 HOH HOH . D 4 HOH A 278 878 285 HOH HOH . D 4 HOH A 279 879 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HCS . . . C 3 -16.099 -1.709 -49 1 52.76 ? N HCS 502 A 1 HETATM 2 C CA HCS . . . C 3 -15.449 -1.797 -50.289 1 37.77 ? CA HCS 502 A 1 HETATM 3 C CB HCS . . . C 3 -15.926 -0.801 -51.37 1 37.06 ? CB HCS 502 A 1 HETATM 4 C CG HCS . . . C 3 -17.421 -0.586 -51.499 1 48.69 ? CG HCS 502 A 1 HETATM 5 S SD HCS . . . C 3 -18.135 0.069 -50.011 1 27.94 ? SD HCS 502 A 1 HETATM 6 C C HCS . . . C 3 -13.949 -1.538 -50.134 1 37.37 ? C HCS 502 A 1 HETATM 7 O OXT HCS . . . C 3 -13.184 -2.123 -51.097 1 30.48 ? OXT HCS 502 A 1 HETATM 8 O O HCS . . . C 3 -13.348 -0.857 -49.288 1 30.3 ? O HCS 502 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #