data_4PJ1 # _model_server_result.job_id Lbg7GF4mH5E_W-DaFtXp9Q _model_server_result.datetime_utc '2024-11-21 13:26:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CB","auth_seq_id":601}' # _entry.id 4PJ1 # _exptl.entry_id 4PJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PJ1 _cell.length_a 199.1 _cell.length_b 199.1 _cell.length_c 627.39 _cell.Z_PDB 112 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 CA N N ? 3 EA N N ? 3 GA N N ? 3 IA N N ? 3 KA N N ? 3 MA N N ? 3 OA N N ? 3 QA N N ? 3 SA N N ? 3 UA N N ? 3 WA N N ? 3 YA N N ? 3 AB N N ? 3 CB N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4PJ1 _atom_sites.fract_transf_matrix[1][1] 0.005023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 3 ADP A 1 601 1 ADP ADP . DA 4 MG A 1 602 1 MG MG . EA 3 ADP B 1 601 2 ADP ADP . FA 4 MG B 1 602 2 MG MG . GA 3 ADP C 1 601 3 ADP ADP . HA 4 MG C 1 602 3 MG MG . IA 3 ADP D 1 601 4 ADP ADP . JA 4 MG D 1 602 4 MG MG . KA 3 ADP E 1 601 5 ADP ADP . LA 4 MG E 1 602 5 MG MG . MA 3 ADP F 1 601 6 ADP ADP . NA 4 MG F 1 602 6 MG MG . OA 3 ADP G 1 601 7 ADP ADP . PA 4 MG G 1 602 7 MG MG . QA 3 ADP H 1 601 14 ADP ADP . RA 4 MG H 1 602 14 MG MG . SA 3 ADP I 1 601 8 ADP ADP . TA 4 MG I 1 602 8 MG MG . UA 3 ADP J 1 601 9 ADP ADP . VA 4 MG J 1 602 9 MG MG . WA 3 ADP K 1 601 10 ADP ADP . XA 4 MG K 1 602 10 MG MG . YA 3 ADP L 1 601 11 ADP ADP . ZA 4 MG L 1 602 11 MG MG . AB 3 ADP M 1 601 12 ADP ADP . BB 4 MG M 1 602 12 MG MG . CB 3 ADP N 1 601 13 ADP ADP . DB 4 MG N 1 602 13 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . CB 3 71.565 -7.717 20.604 1 94.66 ? PB ADP 601 N 1 HETATM 2 O O1B ADP . . . CB 3 71.956 -6.518 21.434 1 87.53 ? O1B ADP 601 N 1 HETATM 3 O O2B ADP . . . CB 3 70.751 -8.732 21.374 1 73.03 ? O2B ADP 601 N 1 HETATM 4 O O3B ADP . . . CB 3 72.675 -8.31 19.768 1 73.56 ? O3B ADP 601 N 1 HETATM 5 P PA ADP . . . CB 3 70.047 -5.608 19.461 1 87.29 ? PA ADP 601 N 1 HETATM 6 O O1A ADP . . . CB 3 69.342 -5.288 20.757 1 90.79 ? O1A ADP 601 N 1 HETATM 7 O O2A ADP . . . CB 3 69.338 -5.398 18.145 1 90.06 ? O2A ADP 601 N 1 HETATM 8 O O3A ADP . . . CB 3 70.505 -7.153 19.527 1 86.45 ? O3A ADP 601 N 1 HETATM 9 O O5' ADP . . . CB 3 71.409 -4.746 19.399 1 86.45 ? O5' ADP 601 N 1 HETATM 10 C C5' ADP . . . CB 3 72.387 -5.02 18.401 1 88.48 ? C5' ADP 601 N 1 HETATM 11 C C4' ADP . . . CB 3 73.188 -3.771 18.031 1 85.41 ? C4' ADP 601 N 1 HETATM 12 O O4' ADP . . . CB 3 72.364 -2.715 17.525 1 79.96 ? O4' ADP 601 N 1 HETATM 13 C C3' ADP . . . CB 3 74.001 -3.165 19.168 1 82.25 ? C3' ADP 601 N 1 HETATM 14 O O3' ADP . . . CB 3 75.381 -3.479 18.963 1 72.45 ? O3' ADP 601 N 1 HETATM 15 C C2' ADP . . . CB 3 73.801 -1.664 19.047 1 78.56 ? C2' ADP 601 N 1 HETATM 16 O O2' ADP . . . CB 3 75.055 -0.979 19.036 1 82.35 ? O2' ADP 601 N 1 HETATM 17 C C1' ADP . . . CB 3 73.1 -1.503 17.709 1 82.76 ? C1' ADP 601 N 1 HETATM 18 N N9 ADP . . . CB 3 72.265 -0.275 17.621 1 91.99 ? N9 ADP 601 N 1 HETATM 19 C C8 ADP . . . CB 3 71.156 0.016 18.326 1 97.97 ? C8 ADP 601 N 1 HETATM 20 N N7 ADP . . . CB 3 70.664 1.235 17.975 1 91.31 ? N7 ADP 601 N 1 HETATM 21 C C5 ADP . . . CB 3 71.471 1.744 17.025 1 88.28 ? C5 ADP 601 N 1 HETATM 22 C C6 ADP . . . CB 3 71.534 2.986 16.217 1 91.84 ? C6 ADP 601 N 1 HETATM 23 N N6 ADP . . . CB 3 70.606 3.964 16.357 1 93.45 ? N6 ADP 601 N 1 HETATM 24 N N1 ADP . . . CB 3 72.549 3.113 15.333 1 99.42 ? N1 ADP 601 N 1 HETATM 25 C C2 ADP . . . CB 3 73.48 2.152 15.18 1 98.83 ? C2 ADP 601 N 1 HETATM 26 N N3 ADP . . . CB 3 73.483 1.003 15.878 1 95.25 ? N3 ADP 601 N 1 HETATM 27 C C4 ADP . . . CB 3 72.524 0.744 16.799 1 92.92 ? C4 ADP 601 N 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 108 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #