data_4PJ1
#
_model_server_result.job_id            9aKIUEq2TgGROQoVJdRPYg 
_model_server_result.datetime_utc      '2024-11-21 13:21:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pj1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":601}' 
#
_entry.id    4PJ1 
#
_exptl.entry_id    4PJ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PJ1 
_cell.length_a            199.1 
_cell.length_b            199.1 
_cell.length_c            627.39 
_cell.Z_PDB               112 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PJ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 CA N N 
? 3 EA N N 
? 3 GA N N 
? 3 IA N N 
? 3 KA N N 
? 3 MA N N 
? 3 OA N N 
? 3 QA N N 
? 3 SA N N 
? 3 UA N N 
? 3 WA N N 
? 3 YA N N 
? 3 AB N N 
? 3 CB N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4PJ1 
_atom_sites.fract_transf_matrix[1][1]    0.005023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005023 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001594 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 3 ADP A 1 601 1 ADP ADP . 
DA 4 MG A 1 602 1 MG MG . 
EA 3 ADP B 1 601 2 ADP ADP . 
FA 4 MG B 1 602 2 MG MG . 
GA 3 ADP C 1 601 3 ADP ADP . 
HA 4 MG C 1 602 3 MG MG . 
IA 3 ADP D 1 601 4 ADP ADP . 
JA 4 MG D 1 602 4 MG MG . 
KA 3 ADP E 1 601 5 ADP ADP . 
LA 4 MG E 1 602 5 MG MG . 
MA 3 ADP F 1 601 6 ADP ADP . 
NA 4 MG F 1 602 6 MG MG . 
OA 3 ADP G 1 601 7 ADP ADP . 
PA 4 MG G 1 602 7 MG MG . 
QA 3 ADP H 1 601 14 ADP ADP . 
RA 4 MG H 1 602 14 MG MG . 
SA 3 ADP I 1 601 8 ADP ADP . 
TA 4 MG I 1 602 8 MG MG . 
UA 3 ADP J 1 601 9 ADP ADP . 
VA 4 MG J 1 602 9 MG MG . 
WA 3 ADP K 1 601 10 ADP ADP . 
XA 4 MG K 1 602 10 MG MG . 
YA 3 ADP L 1 601 11 ADP ADP . 
ZA 4 MG L 1 602 11 MG MG . 
AB 3 ADP M 1 601 12 ADP ADP . 
BB 4 MG M 1 602 12 MG MG . 
CB 3 ADP N 1 601 13 ADP ADP . 
DB 4 MG N 1 602 13 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . IA 3 7.339 -26.027 -21.702 1 82.01 ? PB ADP 601 D 1 
HETATM 2 O O1B ADP . . . IA 3 8.621 -26.251 -22.472 1 67.2 ? O1B ADP 601 D 1 
HETATM 3 O O2B ADP . . . IA 3 6.746 -27.263 -21.067 1 62.15 ? O2B ADP 601 D 1 
HETATM 4 O O3B ADP . . . IA 3 6.323 -25.192 -22.444 1 76.16 ? O3B ADP 601 D 1 
HETATM 5 P PA ADP . . . IA 3 7.372 -23.612 -20.205 1 81.24 ? PA ADP 601 D 1 
HETATM 6 O O1A ADP . . . IA 3 8.206 -23.027 -19.091 1 81.28 ? O1A ADP 601 D 1 
HETATM 7 O O2A ADP . . . IA 3 7.266 -22.904 -21.535 1 76.45 ? O2A ADP 601 D 1 
HETATM 8 O O3A ADP . . . IA 3 7.785 -25.155 -20.419 1 81.96 ? O3A ADP 601 D 1 
HETATM 9 O O5' ADP . . . IA 3 5.882 -23.832 -19.648 1 79.87 ? O5' ADP 601 D 1 
HETATM 10 C C5' ADP . . . IA 3 4.779 -23.242 -20.322 1 88.83 ? C5' ADP 601 D 1 
HETATM 11 C C4' ADP . . . IA 3 3.575 -23.225 -19.396 1 86.01 ? C4' ADP 601 D 1 
HETATM 12 O O4' ADP . . . IA 3 3.648 -22.085 -18.536 1 85.11 ? O4' ADP 601 D 1 
HETATM 13 C C3' ADP . . . IA 3 2.295 -23.104 -20.201 1 84.86 ? C3' ADP 601 D 1 
HETATM 14 O O3' ADP . . . IA 3 1.39 -24.136 -19.8 1 74.69 ? O3' ADP 601 D 1 
HETATM 15 C C2' ADP . . . IA 3 1.716 -21.757 -19.831 1 88.47 ? C2' ADP 601 D 1 
HETATM 16 O O2' ADP . . . IA 3 0.297 -21.838 -19.698 1 94.2 ? O2' ADP 601 D 1 
HETATM 17 C C1' ADP . . . IA 3 2.379 -21.433 -18.505 1 88.17 ? C1' ADP 601 D 1 
HETATM 18 N N9 ADP . . . IA 3 2.511 -19.967 -18.324 1 91.02 ? N9 ADP 601 D 1 
HETATM 19 C C8 ADP . . . IA 3 3.324 -19.137 -19.003 1 98.29 ? C8 ADP 601 D 1 
HETATM 20 N N7 ADP . . . IA 3 3.178 -17.856 -18.573 1 95.88 ? N7 ADP 601 D 1 
HETATM 21 C C5 ADP . . . IA 3 2.248 -17.858 -17.6 1 90.44 ? C5 ADP 601 D 1 
HETATM 22 C C6 ADP . . . IA 3 1.615 -16.85 -16.716 1 96.77 ? C6 ADP 601 D 1 
HETATM 23 N N6 ADP . . . IA 3 1.955 -15.541 -16.79 1 100.51 ? N6 ADP 601 D 1 
HETATM 24 N N1 ADP . . . IA 3 0.687 -17.282 -15.833 1 98.32 ? N1 ADP 601 D 1 
HETATM 25 C C2 ADP . . . IA 3 0.338 -18.579 -15.746 1 99.37 ? C2 ADP 601 D 1 
HETATM 26 N N3 ADP . . . IA 3 0.871 -19.544 -16.514 1 95.79 ? N3 ADP 601 D 1 
HETATM 27 C C4 ADP . . . IA 3 1.813 -19.252 -17.442 1 89.52 ? C4 ADP 601 D 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    98 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          25 
_model_server_stats.element_count           27 
#