data_4PJ6 # _model_server_result.job_id PMJhimZDRVUkmz4mWwsXvw _model_server_result.datetime_utc '2024-10-19 14:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1101}' # _entry.id 4PJ6 # _exptl.entry_id 4PJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.35 _cell.angle_gamma 90 _cell.entry_id 4PJ6 _cell.length_a 68.031 _cell.length_b 256.621 _cell.length_c 71.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PJ6 _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG D 166 NAG 2 n C NAG 2 C 2 NAG D 174 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 675 A CYS 828 1_555 A SG CYS 682 A CYS 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf2 B SG CYS 675 B CYS 828 1_555 B SG CYS 682 B CYS 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A ND2 ASN 31 A ASN 184 1_555 F C1 NAG . A NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 A ND2 ASN 103 A ASN 256 1_555 K C1 NAG . A NAG 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 113 A ASN 266 1_555 G C1 NAG . A NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 A ND2 ASN 372 A ASN 525 1_555 H C1 NAG . A NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale5 A ND2 ASN 529 A ASN 682 1_555 I C1 NAG . A NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale6 A ND2 ASN 607 A ASN 760 1_555 L C1 NAG . A NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 A ND2 ASN 697 A ASN 850 1_555 J C1 NAG . A NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 B ND2 ASN 31 B ASN 184 1_555 O C1 NAG . B NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 B ND2 ASN 103 B ASN 256 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale10 B ND2 ASN 113 B ASN 266 1_555 P C1 NAG . B NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale11 B ND2 ASN 215 B ASN 368 1_555 Q C1 NAG . B NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale12 B ND2 ASN 221 B ASN 374 1_555 R C1 NAG . B NAG 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale13 B ND2 ASN 425 B ASN 578 1_555 S C1 NAG . B NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale14 B ND2 ASN 529 B ASN 682 1_555 T C1 NAG . B NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale15 B ND2 ASN 607 B ASN 760 1_555 U C1 NAG . B NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 B ND2 ASN 697 B ASN 850 1_555 V C1 NAG . B NAG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale17 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 A NE2 HIS 311 A HIS 464 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc2 A NE2 HIS 315 A HIS 468 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 A OE1 GLU 334 A GLU 487 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc4 A OE2 GLU 334 A GLU 487 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc5 D ZN ZN . A ZN 1101 1_555 E O LYS . A LYS 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc6 B NE2 HIS 311 B HIS 464 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? metalc ? metalc7 B NE2 HIS 315 B HIS 468 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc8 B OE1 GLU 334 B GLU 487 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PJ6 _atom_sites.fract_transf_matrix[1][1] 0.014699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006651 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 1101 154 ZN ZN . E 4 LYS A 1 1102 158 LYS LYS . F 5 NAG A 1 1103 165 NAG NAG . G 5 NAG A 1 1104 166 NAG NAG . H 5 NAG A 1 1105 167 NAG NAG . I 5 NAG A 1 1106 168 NAG NAG . J 5 NAG A 1 1107 169 NAG NAG . K 5 NAG A 1 1108 170 NAG NAG . L 5 NAG A 1 1109 171 NAG NAG . M 3 ZN B 1 1101 154 ZN ZN . N 4 LYS B 1 1102 158 LYS LYS . O 5 NAG B 1 1103 165 NAG NAG . P 5 NAG B 1 1106 167 NAG NAG . Q 5 NAG B 1 1107 168 NAG NAG . R 5 NAG B 1 1108 169 NAG NAG . S 5 NAG B 1 1109 170 NAG NAG . T 5 NAG B 1 1110 171 NAG NAG . U 5 NAG B 1 1111 172 NAG NAG . V 5 NAG B 1 1112 173 NAG NAG . W 6 HOH A 1 1201 287 HOH HOH . W 6 HOH A 2 1202 193 HOH HOH . W 6 HOH A 3 1203 268 HOH HOH . W 6 HOH A 4 1204 192 HOH HOH . W 6 HOH A 5 1205 155 HOH HOH . W 6 HOH A 6 1206 156 HOH HOH . W 6 HOH A 7 1207 157 HOH HOH . W 6 HOH A 8 1208 158 HOH HOH . W 6 HOH A 9 1209 159 HOH HOH . W 6 HOH A 10 1210 160 HOH HOH . W 6 HOH A 11 1211 161 HOH HOH . W 6 HOH A 12 1212 162 HOH HOH . W 6 HOH A 13 1213 163 HOH HOH . W 6 HOH A 14 1214 164 HOH HOH . W 6 HOH A 15 1215 165 HOH HOH . W 6 HOH A 16 1216 166 HOH HOH . W 6 HOH A 17 1217 167 HOH HOH . W 6 HOH A 18 1218 168 HOH HOH . W 6 HOH A 19 1219 169 HOH HOH . W 6 HOH A 20 1220 170 HOH HOH . W 6 HOH A 21 1221 171 HOH HOH . W 6 HOH A 22 1222 173 HOH HOH . W 6 HOH A 23 1223 174 HOH HOH . W 6 HOH A 24 1224 176 HOH HOH . W 6 HOH A 25 1225 179 HOH HOH . W 6 HOH A 26 1226 180 HOH HOH . W 6 HOH A 27 1227 181 HOH HOH . W 6 HOH A 28 1228 183 HOH HOH . W 6 HOH A 29 1229 184 HOH HOH . W 6 HOH A 30 1230 185 HOH HOH . W 6 HOH A 31 1231 186 HOH HOH . W 6 HOH A 32 1232 187 HOH HOH . W 6 HOH A 33 1233 188 HOH HOH . W 6 HOH A 34 1234 189 HOH HOH . W 6 HOH A 35 1235 190 HOH HOH . W 6 HOH A 36 1236 191 HOH HOH . W 6 HOH A 37 1237 214 HOH HOH . W 6 HOH A 38 1238 217 HOH HOH . W 6 HOH A 39 1239 218 HOH HOH . W 6 HOH A 40 1240 221 HOH HOH . W 6 HOH A 41 1241 223 HOH HOH . W 6 HOH A 42 1242 224 HOH HOH . W 6 HOH A 43 1243 227 HOH HOH . W 6 HOH A 44 1244 228 HOH HOH . W 6 HOH A 45 1245 229 HOH HOH . W 6 HOH A 46 1246 230 HOH HOH . W 6 HOH A 47 1247 232 HOH HOH . W 6 HOH A 48 1248 233 HOH HOH . W 6 HOH A 49 1249 235 HOH HOH . W 6 HOH A 50 1250 236 HOH HOH . W 6 HOH A 51 1251 238 HOH HOH . W 6 HOH A 52 1252 239 HOH HOH . W 6 HOH A 53 1253 240 HOH HOH . W 6 HOH A 54 1254 241 HOH HOH . W 6 HOH A 55 1255 243 HOH HOH . W 6 HOH A 56 1256 244 HOH HOH . W 6 HOH A 57 1257 245 HOH HOH . W 6 HOH A 58 1258 249 HOH HOH . W 6 HOH A 59 1259 250 HOH HOH . W 6 HOH A 60 1260 256 HOH HOH . W 6 HOH A 61 1261 258 HOH HOH . W 6 HOH A 62 1262 259 HOH HOH . W 6 HOH A 63 1263 260 HOH HOH . W 6 HOH A 64 1264 261 HOH HOH . W 6 HOH A 65 1265 262 HOH HOH . W 6 HOH A 66 1266 263 HOH HOH . W 6 HOH A 67 1267 264 HOH HOH . W 6 HOH A 68 1268 269 HOH HOH . W 6 HOH A 69 1269 271 HOH HOH . W 6 HOH A 70 1270 272 HOH HOH . W 6 HOH A 71 1271 273 HOH HOH . W 6 HOH A 72 1272 274 HOH HOH . W 6 HOH A 73 1273 275 HOH HOH . W 6 HOH A 74 1274 276 HOH HOH . W 6 HOH A 75 1275 277 HOH HOH . W 6 HOH A 76 1276 279 HOH HOH . W 6 HOH A 77 1277 280 HOH HOH . W 6 HOH A 78 1278 281 HOH HOH . W 6 HOH A 79 1279 282 HOH HOH . W 6 HOH A 80 1280 285 HOH HOH . W 6 HOH A 81 1281 286 HOH HOH . W 6 HOH A 82 1282 288 HOH HOH . W 6 HOH A 83 1283 293 HOH HOH . W 6 HOH A 84 1284 296 HOH HOH . W 6 HOH A 85 1285 297 HOH HOH . W 6 HOH A 86 1286 298 HOH HOH . W 6 HOH A 87 1287 299 HOH HOH . W 6 HOH A 88 1288 300 HOH HOH . W 6 HOH A 89 1289 301 HOH HOH . W 6 HOH A 90 1290 302 HOH HOH . W 6 HOH A 91 1291 303 HOH HOH . W 6 HOH A 92 1292 304 HOH HOH . W 6 HOH A 93 1293 305 HOH HOH . W 6 HOH A 94 1294 306 HOH HOH . W 6 HOH A 95 1295 308 HOH HOH . W 6 HOH A 96 1296 309 HOH HOH . W 6 HOH A 97 1297 310 HOH HOH . W 6 HOH A 98 1298 311 HOH HOH . W 6 HOH A 99 1299 314 HOH HOH . W 6 HOH A 100 1300 315 HOH HOH . W 6 HOH A 101 1301 316 HOH HOH . X 6 HOH B 1 1201 270 HOH HOH . X 6 HOH B 2 1202 284 HOH HOH . X 6 HOH B 3 1203 172 HOH HOH . X 6 HOH B 4 1204 175 HOH HOH . X 6 HOH B 5 1205 177 HOH HOH . X 6 HOH B 6 1206 178 HOH HOH . X 6 HOH B 7 1207 194 HOH HOH . X 6 HOH B 8 1208 195 HOH HOH . X 6 HOH B 9 1209 196 HOH HOH . X 6 HOH B 10 1210 197 HOH HOH . X 6 HOH B 11 1211 199 HOH HOH . X 6 HOH B 12 1212 200 HOH HOH . X 6 HOH B 13 1213 201 HOH HOH . X 6 HOH B 14 1214 202 HOH HOH . X 6 HOH B 15 1215 203 HOH HOH . X 6 HOH B 16 1216 204 HOH HOH . X 6 HOH B 17 1217 205 HOH HOH . X 6 HOH B 18 1218 206 HOH HOH . X 6 HOH B 19 1219 207 HOH HOH . X 6 HOH B 20 1220 209 HOH HOH . X 6 HOH B 21 1221 210 HOH HOH . X 6 HOH B 22 1222 211 HOH HOH . X 6 HOH B 23 1223 212 HOH HOH . X 6 HOH B 24 1224 213 HOH HOH . X 6 HOH B 25 1225 215 HOH HOH . X 6 HOH B 26 1226 216 HOH HOH . X 6 HOH B 27 1227 219 HOH HOH . X 6 HOH B 28 1228 220 HOH HOH . X 6 HOH B 29 1229 222 HOH HOH . X 6 HOH B 30 1230 225 HOH HOH . X 6 HOH B 31 1231 226 HOH HOH . X 6 HOH B 32 1232 231 HOH HOH . X 6 HOH B 33 1233 234 HOH HOH . X 6 HOH B 34 1234 237 HOH HOH . X 6 HOH B 35 1235 242 HOH HOH . X 6 HOH B 36 1236 246 HOH HOH . X 6 HOH B 37 1237 247 HOH HOH . X 6 HOH B 38 1238 248 HOH HOH . X 6 HOH B 39 1239 251 HOH HOH . X 6 HOH B 40 1240 252 HOH HOH . X 6 HOH B 41 1241 253 HOH HOH . X 6 HOH B 42 1242 254 HOH HOH . X 6 HOH B 43 1243 255 HOH HOH . X 6 HOH B 44 1244 257 HOH HOH . X 6 HOH B 45 1245 265 HOH HOH . X 6 HOH B 46 1246 266 HOH HOH . X 6 HOH B 47 1247 267 HOH HOH . X 6 HOH B 48 1248 283 HOH HOH . X 6 HOH B 49 1249 289 HOH HOH . X 6 HOH B 50 1250 290 HOH HOH . X 6 HOH B 51 1251 291 HOH HOH . X 6 HOH B 52 1252 292 HOH HOH . X 6 HOH B 53 1253 294 HOH HOH . X 6 HOH B 54 1254 295 HOH HOH . X 6 HOH B 55 1255 307 HOH HOH . X 6 HOH B 56 1256 312 HOH HOH . X 6 HOH B 57 1257 313 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 44.684 _atom_site.Cartn_y -71.23 _atom_site.Cartn_z 83.778 _atom_site.occupancy 0.9 _atom_site.B_iso_or_equiv 46.71 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #