data_4PJV # _model_server_result.job_id JcnC2k6-mlit-LGpPP6vSQ _model_server_result.datetime_utc '2024-11-29 04:01:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4PJV # _exptl.entry_id 4PJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.28 _cell.angle_beta 79.99 _cell.angle_gamma 63.88 _cell.entry_id 4PJV _cell.length_a 52.86 _cell.length_b 57.74 _cell.length_c 69.29 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PJV _symmetry.cell_setting . _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 175 n n C1 C2 GOL sing 176 n n C1 H11 GOL sing 177 n n C1 H12 GOL sing 178 n n O1 HO1 GOL sing 179 n n C2 O2 GOL sing 180 n n C2 C3 GOL sing 181 n n C2 H2 GOL sing 182 n n O2 HO2 GOL sing 183 n n C3 O3 GOL sing 184 n n C3 H31 GOL sing 185 n n C3 H32 GOL sing 186 n n O3 HO3 GOL sing 187 n n # _atom_sites.entry_id 4PJV _atom_sites.fract_transf_matrix[1][1] 0.018918 _atom_sites.fract_transf_matrix[1][2] -0.009274 _atom_sites.fract_transf_matrix[1][3] -0.001857 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019288 _atom_sites.fract_transf_matrix[2][3] -0.003176 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2YQ A 1 601 601 2YQ LIG . D 3 GOL A 1 602 611 GOL GOL . E 3 GOL A 1 603 616 GOL GOL . F 2 2YQ B 1 601 601 2YQ LIG . G 3 GOL B 1 602 616 GOL GOL . H 4 HOH A 1 701 80 HOH HOH . H 4 HOH A 2 702 52 HOH HOH . H 4 HOH A 3 703 123 HOH HOH . H 4 HOH A 4 704 31 HOH HOH . H 4 HOH A 5 705 125 HOH HOH . H 4 HOH A 6 706 60 HOH HOH . H 4 HOH A 7 707 119 HOH HOH . H 4 HOH A 8 708 20 HOH HOH . H 4 HOH A 9 709 12 HOH HOH . H 4 HOH A 10 710 13 HOH HOH . H 4 HOH A 11 711 14 HOH HOH . H 4 HOH A 12 712 15 HOH HOH . H 4 HOH A 13 713 16 HOH HOH . H 4 HOH A 14 714 17 HOH HOH . H 4 HOH A 15 715 18 HOH HOH . H 4 HOH A 16 716 19 HOH HOH . H 4 HOH A 17 717 21 HOH HOH . H 4 HOH A 18 718 23 HOH HOH . H 4 HOH A 19 719 24 HOH HOH . H 4 HOH A 20 720 25 HOH HOH . H 4 HOH A 21 721 26 HOH HOH . H 4 HOH A 22 722 27 HOH HOH . H 4 HOH A 23 723 28 HOH HOH . H 4 HOH A 24 724 29 HOH HOH . H 4 HOH A 25 725 30 HOH HOH . H 4 HOH A 26 726 32 HOH HOH . H 4 HOH A 27 727 33 HOH HOH . H 4 HOH A 28 728 34 HOH HOH . H 4 HOH A 29 729 35 HOH HOH . H 4 HOH A 30 730 36 HOH HOH . H 4 HOH A 31 731 38 HOH HOH . H 4 HOH A 32 732 40 HOH HOH . H 4 HOH A 33 733 41 HOH HOH . H 4 HOH A 34 734 43 HOH HOH . H 4 HOH A 35 735 45 HOH HOH . H 4 HOH A 36 736 46 HOH HOH . H 4 HOH A 37 737 48 HOH HOH . H 4 HOH A 38 738 49 HOH HOH . H 4 HOH A 39 739 50 HOH HOH . H 4 HOH A 40 740 54 HOH HOH . H 4 HOH A 41 741 56 HOH HOH . H 4 HOH A 42 742 57 HOH HOH . H 4 HOH A 43 743 58 HOH HOH . H 4 HOH A 44 744 67 HOH HOH . H 4 HOH A 45 745 68 HOH HOH . H 4 HOH A 46 746 69 HOH HOH . H 4 HOH A 47 747 71 HOH HOH . H 4 HOH A 48 748 74 HOH HOH . H 4 HOH A 49 749 76 HOH HOH . H 4 HOH A 50 750 77 HOH HOH . H 4 HOH A 51 751 78 HOH HOH . H 4 HOH A 52 752 79 HOH HOH . H 4 HOH A 53 753 81 HOH HOH . H 4 HOH A 54 754 82 HOH HOH . H 4 HOH A 55 755 83 HOH HOH . H 4 HOH A 56 756 90 HOH HOH . H 4 HOH A 57 757 91 HOH HOH . H 4 HOH A 58 758 109 HOH HOH . H 4 HOH A 59 759 111 HOH HOH . H 4 HOH A 60 760 112 HOH HOH . H 4 HOH A 61 761 113 HOH HOH . H 4 HOH A 62 762 116 HOH HOH . H 4 HOH A 63 763 117 HOH HOH . H 4 HOH A 64 764 118 HOH HOH . H 4 HOH A 65 765 120 HOH HOH . H 4 HOH A 66 766 124 HOH HOH . H 4 HOH A 67 767 126 HOH HOH . H 4 HOH A 68 768 127 HOH HOH . H 4 HOH A 69 769 135 HOH HOH . H 4 HOH A 70 770 136 HOH HOH . H 4 HOH A 71 771 137 HOH HOH . H 4 HOH A 72 772 140 HOH HOH . H 4 HOH A 73 773 143 HOH HOH . H 4 HOH A 74 774 146 HOH HOH . I 4 HOH B 1 701 87 HOH HOH . I 4 HOH B 2 702 84 HOH HOH . I 4 HOH B 3 703 6 HOH HOH . I 4 HOH B 4 704 103 HOH HOH . I 4 HOH B 5 705 145 HOH HOH . I 4 HOH B 6 706 95 HOH HOH . I 4 HOH B 7 707 88 HOH HOH . I 4 HOH B 8 708 96 HOH HOH . I 4 HOH B 9 709 144 HOH HOH . I 4 HOH B 10 710 132 HOH HOH . I 4 HOH B 11 711 115 HOH HOH . I 4 HOH B 12 712 1 HOH HOH . I 4 HOH B 13 713 2 HOH HOH . I 4 HOH B 14 714 3 HOH HOH . I 4 HOH B 15 715 4 HOH HOH . I 4 HOH B 16 716 5 HOH HOH . I 4 HOH B 17 717 7 HOH HOH . I 4 HOH B 18 718 8 HOH HOH . I 4 HOH B 19 719 9 HOH HOH . I 4 HOH B 20 720 10 HOH HOH . I 4 HOH B 21 721 11 HOH HOH . I 4 HOH B 22 722 37 HOH HOH . I 4 HOH B 23 723 39 HOH HOH . I 4 HOH B 24 724 42 HOH HOH . I 4 HOH B 25 725 44 HOH HOH . I 4 HOH B 26 726 47 HOH HOH . I 4 HOH B 27 727 51 HOH HOH . I 4 HOH B 28 728 53 HOH HOH . I 4 HOH B 29 729 55 HOH HOH . I 4 HOH B 30 730 59 HOH HOH . I 4 HOH B 31 731 61 HOH HOH . I 4 HOH B 32 732 62 HOH HOH . I 4 HOH B 33 733 63 HOH HOH . I 4 HOH B 34 734 64 HOH HOH . I 4 HOH B 35 735 65 HOH HOH . I 4 HOH B 36 736 66 HOH HOH . I 4 HOH B 37 737 72 HOH HOH . I 4 HOH B 38 738 73 HOH HOH . I 4 HOH B 39 739 85 HOH HOH . I 4 HOH B 40 740 86 HOH HOH . I 4 HOH B 41 741 89 HOH HOH . I 4 HOH B 42 742 92 HOH HOH . I 4 HOH B 43 743 93 HOH HOH . I 4 HOH B 44 744 94 HOH HOH . I 4 HOH B 45 745 97 HOH HOH . I 4 HOH B 46 746 98 HOH HOH . I 4 HOH B 47 747 99 HOH HOH . I 4 HOH B 48 748 100 HOH HOH . I 4 HOH B 49 749 101 HOH HOH . I 4 HOH B 50 750 102 HOH HOH . I 4 HOH B 51 751 104 HOH HOH . I 4 HOH B 52 752 105 HOH HOH . I 4 HOH B 53 753 106 HOH HOH . I 4 HOH B 54 754 107 HOH HOH . I 4 HOH B 55 755 108 HOH HOH . I 4 HOH B 56 756 110 HOH HOH . I 4 HOH B 57 757 114 HOH HOH . I 4 HOH B 58 758 121 HOH HOH . I 4 HOH B 59 759 122 HOH HOH . I 4 HOH B 60 760 128 HOH HOH . I 4 HOH B 61 761 129 HOH HOH . I 4 HOH B 62 762 130 HOH HOH . I 4 HOH B 63 763 131 HOH HOH . I 4 HOH B 64 764 133 HOH HOH . I 4 HOH B 65 765 134 HOH HOH . I 4 HOH B 66 766 138 HOH HOH . I 4 HOH B 67 767 139 HOH HOH . I 4 HOH B 68 768 141 HOH HOH . I 4 HOH B 69 769 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 19.613 1.349 -9.391 1 7.1 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . D 3 18.956 0.883 -10.575 1 7.11 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . D 3 19.403 2.836 -9.199 1 7.23 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . D 3 18.089 3.11 -8.695 1 7.39 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . D 3 20.454 3.35 -8.222 1 7.51 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . D 3 20.66 2.519 -7.056 1 7.48 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #