data_4PJZ
#
_model_server_result.job_id            4EvlwK30lJ_SsLKOVS0kVg 
_model_server_result.datetime_utc      '2024-10-12 16:31:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pjz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    4PJZ 
#
_exptl.entry_id    4PJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              172.265 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '8-METHYLNONANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PJZ 
_cell.length_a            58.116 
_cell.length_b            63.569 
_cell.length_c            138.884 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PJZ 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GHP 1 B GHP 1 1_555 A N 3MY 2 B 3MY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C3 GHP 1 B GHP 1 1_555 A OD1 3FG 3 B 3FG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
covale ? covale3 A C 3MY 2 B 3MY 2 1_555 A N 3FG 3 B 3FG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A OBD 3MY 2 B 3MY 2 1_555 A C3 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale5 A C 3FG 3 B 3FG 3 1_555 A N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale6 A C GHP 4 B GHP 4 1_555 A N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 A C5 GHP 4 B GHP 4 1_555 A OCZ OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
covale ? covale8 A O4 GHP 4 B GHP 4 1_555 C C1 GCS . B GCS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? 
covale ? covale9 A C GHP 5 B GHP 5 1_555 A N OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale10 A C3 GHP 5 B GHP 5 1_555 A CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale11 A C OMY 6 B OMY 6 1_555 A N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale12 A ODE OMY 6 B OMY 6 1_555 E C1 NAG . B NAG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale13 A OD1 3FG 7 B 3FG 7 1_555 F C1 MAN . B MAN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale14 C N2 GCS . B GCS 101 1_555 D C T55 . B T55 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale15 B C DPR 171 A DPR 171 1_555 B N AIB 172 A AIB 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 B C AIB 172 A AIB 172 1_555 B N DAL 173 A DAL 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale17 B C DAL 173 A DAL 173 1_555 B N DAL 174 A DAL 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C10 H20 O2' 
_chem_comp.formula_weight    172.265 
_chem_comp.id                T55 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '8-METHYLNONANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OXT C T55 sing 564 n n 
CAL C T55 sing 565 n n 
CAL CAK T55 sing 566 n n 
C O T55 doub 567 n n 
CAK CAJ T55 sing 568 n n 
CAJ CAI T55 sing 569 n n 
CAI CAH T55 sing 570 n n 
CAH CAG T55 sing 571 n n 
CAG CAE T55 sing 572 n n 
CAE CAD T55 sing 573 n n 
CAE CAF T55 sing 574 n n 
OXT HXT T55 sing 575 n n 
CAL HAL1 T55 sing 576 n n 
CAL HAL2 T55 sing 577 n n 
CAK HAK1 T55 sing 578 n n 
CAK HAK2 T55 sing 579 n n 
CAJ HAJ1 T55 sing 580 n n 
CAJ HAJ2 T55 sing 581 n n 
CAI HAI1 T55 sing 582 n n 
CAI HAI2 T55 sing 583 n n 
CAH HAH1 T55 sing 584 n n 
CAH HAH2 T55 sing 585 n n 
CAG HAG1 T55 sing 586 n n 
CAG HAG2 T55 sing 587 n n 
CAE HAE T55 sing 588 n n 
CAD HAD1 T55 sing 589 n n 
CAD HAD2 T55 sing 590 n n 
CAD HAD3 T55 sing 591 n n 
CAF HAF1 T55 sing 592 n n 
CAF HAF2 T55 sing 593 n n 
CAF HAF3 T55 sing 594 n n 
#
_atom_sites.entry_id                     4PJZ 
_atom_sites.fract_transf_matrix[1][1]    0.017207 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015731 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0072 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GCS B 1 101 8 GCS GCS . 
D 4 T55 B 1 102 9 T55 T55 . 
E 5 NAG B 1 103 10 NAG NAG . 
F 6 MAN B 1 104 11 MAN MAN . 
G 7 PO4 B 1 105 1 PO4 PO4 . 
H 8 GOL B 1 106 3 GOL GOL . 
I 7 PO4 A 1 201 2 PO4 PO4 . 
J 8 GOL A 1 202 4 GOL GOL . 
K 9 HOH B 1 201 55 HOH HOH . 
K 9 HOH B 2 202 16 HOH HOH . 
K 9 HOH B 3 203 96 HOH HOH . 
K 9 HOH B 4 204 58 HOH HOH . 
K 9 HOH B 5 205 43 HOH HOH . 
K 9 HOH B 6 206 127 HOH HOH . 
K 9 HOH B 7 207 101 HOH HOH . 
K 9 HOH B 8 208 73 HOH HOH . 
K 9 HOH B 9 209 15 HOH HOH . 
K 9 HOH B 10 210 36 HOH HOH . 
K 9 HOH B 11 211 74 HOH HOH . 
K 9 HOH B 12 212 76 HOH HOH . 
K 9 HOH B 13 213 89 HOH HOH . 
K 9 HOH B 14 214 109 HOH HOH . 
K 9 HOH B 15 215 122 HOH HOH . 
K 9 HOH B 16 216 131 HOH HOH . 
L 9 HOH A 1 301 111 HOH HOH . 
L 9 HOH A 2 302 30 HOH HOH . 
L 9 HOH A 3 303 42 HOH HOH . 
L 9 HOH A 4 304 6 HOH HOH . 
L 9 HOH A 5 305 124 HOH HOH . 
L 9 HOH A 6 306 5 HOH HOH . 
L 9 HOH A 7 307 48 HOH HOH . 
L 9 HOH A 8 308 70 HOH HOH . 
L 9 HOH A 9 309 7 HOH HOH . 
L 9 HOH A 10 310 28 HOH HOH . 
L 9 HOH A 11 311 86 HOH HOH . 
L 9 HOH A 12 312 78 HOH HOH . 
L 9 HOH A 13 313 64 HOH HOH . 
L 9 HOH A 14 314 108 HOH HOH . 
L 9 HOH A 15 315 57 HOH HOH . 
L 9 HOH A 16 316 12 HOH HOH . 
L 9 HOH A 17 317 32 HOH HOH . 
L 9 HOH A 18 318 2 HOH HOH . 
L 9 HOH A 19 319 22 HOH HOH . 
L 9 HOH A 20 320 54 HOH HOH . 
L 9 HOH A 21 321 83 HOH HOH . 
L 9 HOH A 22 322 107 HOH HOH . 
L 9 HOH A 23 323 13 HOH HOH . 
L 9 HOH A 24 324 20 HOH HOH . 
L 9 HOH A 25 325 94 HOH HOH . 
L 9 HOH A 26 326 68 HOH HOH . 
L 9 HOH A 27 327 112 HOH HOH . 
L 9 HOH A 28 328 92 HOH HOH . 
L 9 HOH A 29 329 35 HOH HOH . 
L 9 HOH A 30 330 129 HOH HOH . 
L 9 HOH A 31 331 75 HOH HOH . 
L 9 HOH A 32 332 98 HOH HOH . 
L 9 HOH A 33 333 52 HOH HOH . 
L 9 HOH A 34 334 21 HOH HOH . 
L 9 HOH A 35 335 71 HOH HOH . 
L 9 HOH A 36 336 14 HOH HOH . 
L 9 HOH A 37 337 97 HOH HOH . 
L 9 HOH A 38 338 8 HOH HOH . 
L 9 HOH A 39 339 3 HOH HOH . 
L 9 HOH A 40 340 26 HOH HOH . 
L 9 HOH A 41 341 114 HOH HOH . 
L 9 HOH A 42 342 128 HOH HOH . 
L 9 HOH A 43 343 40 HOH HOH . 
L 9 HOH A 44 344 81 HOH HOH . 
L 9 HOH A 45 345 125 HOH HOH . 
L 9 HOH A 46 346 123 HOH HOH . 
L 9 HOH A 47 347 63 HOH HOH . 
L 9 HOH A 48 348 1 HOH HOH . 
L 9 HOH A 49 349 115 HOH HOH . 
L 9 HOH A 50 350 4 HOH HOH . 
L 9 HOH A 51 351 9 HOH HOH . 
L 9 HOH A 52 352 10 HOH HOH . 
L 9 HOH A 53 353 11 HOH HOH . 
L 9 HOH A 54 354 17 HOH HOH . 
L 9 HOH A 55 355 18 HOH HOH . 
L 9 HOH A 56 356 19 HOH HOH . 
L 9 HOH A 57 357 23 HOH HOH . 
L 9 HOH A 58 358 24 HOH HOH . 
L 9 HOH A 59 359 25 HOH HOH . 
L 9 HOH A 60 360 27 HOH HOH . 
L 9 HOH A 61 361 29 HOH HOH . 
L 9 HOH A 62 362 31 HOH HOH . 
L 9 HOH A 63 363 33 HOH HOH . 
L 9 HOH A 64 364 34 HOH HOH . 
L 9 HOH A 65 365 37 HOH HOH . 
L 9 HOH A 66 366 38 HOH HOH . 
L 9 HOH A 67 367 39 HOH HOH . 
L 9 HOH A 68 368 41 HOH HOH . 
L 9 HOH A 69 369 44 HOH HOH . 
L 9 HOH A 70 370 45 HOH HOH . 
L 9 HOH A 71 371 46 HOH HOH . 
L 9 HOH A 72 372 47 HOH HOH . 
L 9 HOH A 73 373 49 HOH HOH . 
L 9 HOH A 74 374 50 HOH HOH . 
L 9 HOH A 75 375 51 HOH HOH . 
L 9 HOH A 76 376 53 HOH HOH . 
L 9 HOH A 77 377 56 HOH HOH . 
L 9 HOH A 78 378 59 HOH HOH . 
L 9 HOH A 79 379 60 HOH HOH . 
L 9 HOH A 80 380 61 HOH HOH . 
L 9 HOH A 81 381 62 HOH HOH . 
L 9 HOH A 82 382 65 HOH HOH . 
L 9 HOH A 83 383 66 HOH HOH . 
L 9 HOH A 84 384 67 HOH HOH . 
L 9 HOH A 85 385 69 HOH HOH . 
L 9 HOH A 86 386 72 HOH HOH . 
L 9 HOH A 87 387 77 HOH HOH . 
L 9 HOH A 88 388 79 HOH HOH . 
L 9 HOH A 89 389 80 HOH HOH . 
L 9 HOH A 90 390 82 HOH HOH . 
L 9 HOH A 91 391 84 HOH HOH . 
L 9 HOH A 92 392 85 HOH HOH . 
L 9 HOH A 93 393 87 HOH HOH . 
L 9 HOH A 94 394 88 HOH HOH . 
L 9 HOH A 95 395 90 HOH HOH . 
L 9 HOH A 96 396 91 HOH HOH . 
L 9 HOH A 97 397 93 HOH HOH . 
L 9 HOH A 98 398 95 HOH HOH . 
L 9 HOH A 99 399 99 HOH HOH . 
L 9 HOH A 100 400 100 HOH HOH . 
L 9 HOH A 101 401 102 HOH HOH . 
L 9 HOH A 102 402 103 HOH HOH . 
L 9 HOH A 103 403 104 HOH HOH . 
L 9 HOH A 104 404 105 HOH HOH . 
L 9 HOH A 105 405 106 HOH HOH . 
L 9 HOH A 106 406 110 HOH HOH . 
L 9 HOH A 107 407 113 HOH HOH . 
L 9 HOH A 108 408 116 HOH HOH . 
L 9 HOH A 109 409 117 HOH HOH . 
L 9 HOH A 110 410 118 HOH HOH . 
L 9 HOH A 111 411 119 HOH HOH . 
L 9 HOH A 112 412 120 HOH HOH . 
L 9 HOH A 113 413 121 HOH HOH . 
L 9 HOH A 114 414 126 HOH HOH . 
L 9 HOH A 115 415 130 HOH HOH . 
L 9 HOH A 116 416 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD T55 . . . D 4 24.497 9.298 28.159 1 48.36 ? CAD T55 102 B 1 
HETATM 2 C CAE T55 . . . D 4 25.433 10.274 27.458 1 46.39 ? CAE T55 102 B 1 
HETATM 3 C CAG T55 . . . D 4 26.648 10.423 28.348 1 45.76 ? CAG T55 102 B 1 
HETATM 4 C CAH T55 . . . D 4 27.629 11.436 27.787 1 45.35 ? CAH T55 102 B 1 
HETATM 5 C CAI T55 . . . D 4 27.87 12.551 28.771 1 45.84 ? CAI T55 102 B 1 
HETATM 6 C CAJ T55 . . . D 4 29.266 13.123 28.601 1 42.17 ? CAJ T55 102 B 1 
HETATM 7 C CAK T55 . . . D 4 29.3 14.491 29.245 1 39.34 ? CAK T55 102 B 1 
HETATM 8 C CAL T55 . . . D 4 29.905 15.534 28.343 1 36.81 ? CAL T55 102 B 1 
HETATM 9 C CAF T55 . . . D 4 25.776 9.808 26.047 1 45.14 ? CAF T55 102 B 1 
HETATM 10 C C T55 . . . D 4 29.055 16.759 28.427 1 35.77 ? C T55 102 B 1 
HETATM 11 O O T55 . . . D 4 28.091 16.867 27.715 1 38.66 ? O T55 102 B 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           122 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           11 
#