data_4PK0
#
_model_server_result.job_id            ILUpyH1nHS5BMn4xTNOkGg 
_model_server_result.datetime_utc      '2024-10-12 18:15:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pk0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":103}' 
#
_entry.id    4PK0 
#
_exptl.entry_id    4PK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PK0 
_cell.length_a            55.923 
_cell.length_b            63.233 
_cell.length_c            138.615 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PK0 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GHP 1 B GHP 1 1_555 A N 3MY 2 B 3MY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C3 GHP 1 B GHP 1 1_555 A OD1 3FG 3 B 3FG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? 
covale ? covale3 A C 3MY 2 B 3MY 2 1_555 A N 3FG 3 B 3FG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale4 A OBD 3MY 2 B 3MY 2 1_555 A C3 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? 
covale ? covale5 A C 3FG 3 B 3FG 3 1_555 A N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C GHP 4 B GHP 4 1_555 A N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C5 GHP 4 B GHP 4 1_555 A OCZ OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale8 A O4 GHP 4 B GHP 4 1_555 C C1 GCS . B GCS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale9 A C GHP 5 B GHP 5 1_555 A N OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale10 A C3 GHP 5 B GHP 5 1_555 A CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? 
covale ? covale11 A C OMY 6 B OMY 6 1_555 A N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 A ODE OMY 6 B OMY 6 1_555 D C1 NAG . B NAG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale13 A OD1 3FG 7 B 3FG 7 1_555 E C1 MAN . B MAN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale14 C N2 GCS . B GCS 101 1_555 F C T55 . A T55 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale15 B C LEU 164 A LEU 164 1_555 B N CCS 165 A CCS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale16 B C CCS 165 A CCS 165 1_555 B N ALA 166 A ALA 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale17 B C ALA 166 A ALA 166 1_555 B N MHS 167 A MHS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale18 B C MHS 167 A MHS 167 1_555 B N DPR 168 A DPR 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
covale ? covale19 B C DPR 168 A DPR 168 1_555 B N AIB 169 A AIB 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale20 B C AIB 169 A AIB 169 1_555 B N DAL 170 A DAL 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale21 B C DAL 170 A DAL 170 1_555 B N DAL 171 A DAL 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 386 n n 
C1 O1 MAN sing 387 n n 
C1 O5 MAN sing 388 n n 
C1 H1 MAN sing 389 n n 
C2 C3 MAN sing 390 n n 
C2 O2 MAN sing 391 n n 
C2 H2 MAN sing 392 n n 
C3 C4 MAN sing 393 n n 
C3 O3 MAN sing 394 n n 
C3 H3 MAN sing 395 n n 
C4 C5 MAN sing 396 n n 
C4 O4 MAN sing 397 n n 
C4 H4 MAN sing 398 n n 
C5 C6 MAN sing 399 n n 
C5 O5 MAN sing 400 n n 
C5 H5 MAN sing 401 n n 
C6 O6 MAN sing 402 n n 
C6 H61 MAN sing 403 n n 
C6 H62 MAN sing 404 n n 
O1 HO1 MAN sing 405 n n 
O2 HO2 MAN sing 406 n n 
O3 HO3 MAN sing 407 n n 
O4 HO4 MAN sing 408 n n 
O6 HO6 MAN sing 409 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4PK0 
_atom_sites.fract_transf_matrix[1][1]    0.017882 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015815 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007214 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GCS B 1 101 8 GCS GCS . 
D 4 NAG B 1 102 10 NAG NAG . 
E 5 MAN B 1 103 11 MAN MAN . 
F 6 T55 A 1 201 9 T55 T55 . 
G 7 CL A 1 202 1 CL CL . 
H 8 NA A 1 203 2 NA NA . 
I 9 PO4 A 1 204 3 PO4 PO4 . 
J 10 GOL A 1 205 4 GOL GOL . 
K 11 HOH B 1 201 16 HOH HOH . 
K 11 HOH B 2 202 66 HOH HOH . 
K 11 HOH B 3 203 82 HOH HOH . 
K 11 HOH B 4 204 15 HOH HOH . 
K 11 HOH B 5 205 36 HOH HOH . 
K 11 HOH B 6 206 59 HOH HOH . 
K 11 HOH B 7 207 69 HOH HOH . 
K 11 HOH B 8 208 70 HOH HOH . 
K 11 HOH B 9 209 75 HOH HOH . 
K 11 HOH B 10 210 76 HOH HOH . 
K 11 HOH B 11 211 80 HOH HOH . 
K 11 HOH B 12 212 87 HOH HOH . 
L 11 HOH A 1 301 40 HOH HOH . 
L 11 HOH A 2 302 6 HOH HOH . 
L 11 HOH A 3 303 42 HOH HOH . 
L 11 HOH A 4 304 30 HOH HOH . 
L 11 HOH A 5 305 2 HOH HOH . 
L 11 HOH A 6 306 43 HOH HOH . 
L 11 HOH A 7 307 8 HOH HOH . 
L 11 HOH A 8 308 22 HOH HOH . 
L 11 HOH A 9 309 12 HOH HOH . 
L 11 HOH A 10 310 13 HOH HOH . 
L 11 HOH A 11 311 5 HOH HOH . 
L 11 HOH A 12 312 89 HOH HOH . 
L 11 HOH A 13 313 67 HOH HOH . 
L 11 HOH A 14 314 48 HOH HOH . 
L 11 HOH A 15 315 7 HOH HOH . 
L 11 HOH A 16 316 55 HOH HOH . 
L 11 HOH A 17 317 90 HOH HOH . 
L 11 HOH A 18 318 79 HOH HOH . 
L 11 HOH A 19 319 20 HOH HOH . 
L 11 HOH A 20 320 3 HOH HOH . 
L 11 HOH A 21 321 14 HOH HOH . 
L 11 HOH A 22 322 54 HOH HOH . 
L 11 HOH A 23 323 35 HOH HOH . 
L 11 HOH A 24 324 26 HOH HOH . 
L 11 HOH A 25 325 53 HOH HOH . 
L 11 HOH A 26 326 32 HOH HOH . 
L 11 HOH A 27 327 74 HOH HOH . 
L 11 HOH A 28 328 28 HOH HOH . 
L 11 HOH A 29 329 91 HOH HOH . 
L 11 HOH A 30 330 21 HOH HOH . 
L 11 HOH A 31 331 96 HOH HOH . 
L 11 HOH A 32 332 98 HOH HOH . 
L 11 HOH A 33 333 97 HOH HOH . 
L 11 HOH A 34 334 68 HOH HOH . 
L 11 HOH A 35 335 1 HOH HOH . 
L 11 HOH A 36 336 4 HOH HOH . 
L 11 HOH A 37 337 9 HOH HOH . 
L 11 HOH A 38 338 10 HOH HOH . 
L 11 HOH A 39 339 11 HOH HOH . 
L 11 HOH A 40 340 17 HOH HOH . 
L 11 HOH A 41 341 18 HOH HOH . 
L 11 HOH A 42 342 19 HOH HOH . 
L 11 HOH A 43 343 23 HOH HOH . 
L 11 HOH A 44 344 24 HOH HOH . 
L 11 HOH A 45 345 25 HOH HOH . 
L 11 HOH A 46 346 27 HOH HOH . 
L 11 HOH A 47 347 29 HOH HOH . 
L 11 HOH A 48 348 31 HOH HOH . 
L 11 HOH A 49 349 33 HOH HOH . 
L 11 HOH A 50 350 34 HOH HOH . 
L 11 HOH A 51 351 37 HOH HOH . 
L 11 HOH A 52 352 38 HOH HOH . 
L 11 HOH A 53 353 39 HOH HOH . 
L 11 HOH A 54 354 41 HOH HOH . 
L 11 HOH A 55 355 44 HOH HOH . 
L 11 HOH A 56 356 45 HOH HOH . 
L 11 HOH A 57 357 46 HOH HOH . 
L 11 HOH A 58 358 47 HOH HOH . 
L 11 HOH A 59 359 49 HOH HOH . 
L 11 HOH A 60 360 50 HOH HOH . 
L 11 HOH A 61 361 51 HOH HOH . 
L 11 HOH A 62 362 52 HOH HOH . 
L 11 HOH A 63 363 56 HOH HOH . 
L 11 HOH A 64 364 57 HOH HOH . 
L 11 HOH A 65 365 58 HOH HOH . 
L 11 HOH A 66 366 60 HOH HOH . 
L 11 HOH A 67 367 61 HOH HOH . 
L 11 HOH A 68 368 62 HOH HOH . 
L 11 HOH A 69 369 63 HOH HOH . 
L 11 HOH A 70 370 64 HOH HOH . 
L 11 HOH A 71 371 65 HOH HOH . 
L 11 HOH A 72 372 71 HOH HOH . 
L 11 HOH A 73 373 72 HOH HOH . 
L 11 HOH A 74 374 73 HOH HOH . 
L 11 HOH A 75 375 77 HOH HOH . 
L 11 HOH A 76 376 78 HOH HOH . 
L 11 HOH A 77 377 81 HOH HOH . 
L 11 HOH A 78 378 83 HOH HOH . 
L 11 HOH A 79 379 84 HOH HOH . 
L 11 HOH A 80 380 85 HOH HOH . 
L 11 HOH A 81 381 86 HOH HOH . 
L 11 HOH A 82 382 88 HOH HOH . 
L 11 HOH A 83 383 92 HOH HOH . 
L 11 HOH A 84 384 93 HOH HOH . 
L 11 HOH A 85 385 94 HOH HOH . 
L 11 HOH A 86 386 95 HOH HOH . 
L 11 HOH A 87 387 99 HOH HOH . 
L 11 HOH A 88 388 100 HOH HOH . 
L 11 HOH A 89 389 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . E 5 20.546 21.246 41.542 1 32.95 ? C1 MAN 103 B 1 
HETATM 2 C C2 MAN . . . E 5 20.914 19.83 42.005 1 31.61 ? C2 MAN 103 B 1 
HETATM 3 C C3 MAN . . . E 5 19.683 18.972 42.241 1 31.97 ? C3 MAN 103 B 1 
HETATM 4 C C4 MAN . . . E 5 18.67 19.723 43.114 1 32.45 ? C4 MAN 103 B 1 
HETATM 5 C C5 MAN . . . E 5 18.39 21.128 42.57 1 32.91 ? C5 MAN 103 B 1 
HETATM 6 C C6 MAN . . . E 5 17.511 21.913 43.545 1 33.04 ? C6 MAN 103 B 1 
HETATM 7 O O2 MAN . . . E 5 21.635 19.884 43.21 1 31.28 ? O2 MAN 103 B 1 
HETATM 8 O O3 MAN . . . E 5 20.047 17.732 42.837 1 30.42 ? O3 MAN 103 B 1 
HETATM 9 O O4 MAN . . . E 5 17.466 18.974 43.145 1 33.32 ? O4 MAN 103 B 1 
HETATM 10 O O5 MAN . . . E 5 19.594 21.857 42.397 1 32.39 ? O5 MAN 103 B 1 
HETATM 11 O O6 MAN . . . E 5 18.315 22.269 44.651 1 34.37 ? O6 MAN 103 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#