data_4PK5 # _model_server_result.job_id 053pjuuURVO1NB9hAGNUEA _model_server_result.datetime_utc '2024-11-28 11:53:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 4PK5 # _exptl.entry_id 4PK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.496 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1,3-benzodioxol-5-yl)-2-{[5-(4-methylphenyl)[1,3]thiazolo[2,3-c][1,2,4]triazol-3-yl]sulfanyl}acetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PK5 _cell.length_a 84.799 _cell.length_b 90.414 _cell.length_c 131.757 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 328 A CYS 308 1_555 B SG CYS 328 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 366 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N17 PKJ . A PKJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 B NE2 HIS 366 B HIS 346 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc4 E FE HEM . B HEM 501 1_555 F N17 PKJ . B PKJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C20 H16 N4 O3 S2' _chem_comp.formula_weight 424.496 _chem_comp.id PKJ _chem_comp.mon_nstd_flag . _chem_comp.name N-(1,3-benzodioxol-5-yl)-2-{[5-(4-methylphenyl)[1,3]thiazolo[2,3-c][1,2,4]triazol-3-yl]sulfanyl}acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S19 C20 PKJ sing 342 n y S19 C18 PKJ sing 343 n y C20 C21 PKJ doub 344 n y C21 C23 PKJ sing 345 n n C21 N22 PKJ sing 346 n y C18 N22 PKJ sing 347 n y C18 N17 PKJ doub 348 n y C24 C23 PKJ doub 349 n y C24 C25 PKJ sing 350 n y C23 C28 PKJ sing 351 n y C25 C26 PKJ doub 352 n y N22 C15 PKJ sing 353 n y C28 C27 PKJ doub 354 n y N17 N16 PKJ sing 355 n y C26 C27 PKJ sing 356 n y C26 C29 PKJ sing 357 n n C15 N16 PKJ doub 358 n y C15 S14 PKJ sing 359 n n S14 C13 PKJ sing 360 n n O1 C2 PKJ doub 361 n n C13 C2 PKJ sing 362 n n C2 N3 PKJ sing 363 n n N3 C4 PKJ sing 364 n n C5 C4 PKJ doub 365 n y C5 C6 PKJ sing 366 n y C4 C12 PKJ sing 367 n y C6 C7 PKJ doub 368 n y C12 C11 PKJ doub 369 n y C7 C11 PKJ sing 370 n y C7 O8 PKJ sing 371 n n C11 O10 PKJ sing 372 n n O8 C9 PKJ sing 373 n n O10 C9 PKJ sing 374 n n C24 H1 PKJ sing 375 n n C28 H2 PKJ sing 376 n n C25 H3 PKJ sing 377 n n C27 H4 PKJ sing 378 n n C5 H5 PKJ sing 379 n n C6 H6 PKJ sing 380 n n C12 H7 PKJ sing 381 n n C20 H8 PKJ sing 382 n n C9 H9 PKJ sing 383 n n C9 H10 PKJ sing 384 n n C29 H11 PKJ sing 385 n n C29 H12 PKJ sing 386 n n C29 H13 PKJ sing 387 n n C13 H14 PKJ sing 388 n n C13 H15 PKJ sing 389 n n N3 H16 PKJ sing 390 n n # _atom_sites.entry_id 4PK5 _atom_sites.fract_transf_matrix[1][1] 0.011793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 404 HEM HEM . D 3 PKJ A 1 502 2 PKJ UNL . E 2 HEM B 1 501 404 HEM HEM . F 3 PKJ B 1 502 1 PKJ UNL . G 4 HOH A 1 601 1 HOH HOH . G 4 HOH A 2 602 3 HOH HOH . G 4 HOH A 3 603 4 HOH HOH . G 4 HOH A 4 604 5 HOH HOH . G 4 HOH A 5 605 8 HOH HOH . H 4 HOH B 1 601 2 HOH HOH . H 4 HOH B 2 602 6 HOH HOH . H 4 HOH B 3 603 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 PKJ . . . F 3 -29.9 49.832 18.338 1 40.49 ? C24 PKJ 502 B 1 HETATM 2 C C28 PKJ . . . F 3 -28.397 48.085 18.943 1 39.13 ? C28 PKJ 502 B 1 HETATM 3 C C25 PKJ . . . F 3 -30.966 49.054 18.752 1 40.7 ? C25 PKJ 502 B 1 HETATM 4 C C27 PKJ . . . F 3 -29.45 47.305 19.359 1 39.68 ? C27 PKJ 502 B 1 HETATM 5 C C5 PKJ . . . F 3 -26.75 52.855 24.565 1 86 ? C5 PKJ 502 B 1 HETATM 6 C C6 PKJ . . . F 3 -27.036 53.977 25.311 1 87.3 ? C6 PKJ 502 B 1 HETATM 7 C C12 PKJ . . . F 3 -25.612 51.747 26.408 1 87.46 ? C12 PKJ 502 B 1 HETATM 8 C C23 PKJ . . . F 3 -28.605 49.354 18.43 1 39.9 ? C23 PKJ 502 B 1 HETATM 9 C C26 PKJ . . . F 3 -30.736 47.791 19.26 1 41.73 ? C26 PKJ 502 B 1 HETATM 10 C C4 PKJ . . . F 3 -26.06 51.785 25.112 1 80.21 ? C4 PKJ 502 B 1 HETATM 11 C C7 PKJ . . . F 3 -26.585 53.923 26.608 1 96.97 ? C7 PKJ 502 B 1 HETATM 12 C C11 PKJ . . . F 3 -25.902 52.862 27.141 1 94.79 ? C11 PKJ 502 B 1 HETATM 13 C C18 PKJ . . . F 3 -25.279 50.979 18.221 1 37.43 ? C18 PKJ 502 B 1 HETATM 14 C C15 PKJ . . . F 3 -25.833 49.966 19.994 1 43.5 ? C15 PKJ 502 B 1 HETATM 15 C C20 PKJ . . . F 3 -27.277 50.72 16.833 1 35.62 ? C20 PKJ 502 B 1 HETATM 16 C C21 PKJ . . . F 3 -27.424 50.131 18.021 1 38.17 ? C21 PKJ 502 B 1 HETATM 17 C C2 PKJ . . . F 3 -25.892 50.736 23.02 1 68.21 ? C2 PKJ 502 B 1 HETATM 18 C C9 PKJ . . . F 3 -25.839 54.422 28.543 1 106.78 ? C9 PKJ 502 B 1 HETATM 19 C C29 PKJ . . . F 3 -31.865 46.942 19.707 1 43.18 ? C29 PKJ 502 B 1 HETATM 20 C C13 PKJ . . . F 3 -25.644 49.357 22.475 1 59.73 ? C13 PKJ 502 B 1 HETATM 21 N N17 PKJ . . . F 3 -24.223 51.091 18.992 1 38.39 ? N17 PKJ 502 B 1 HETATM 22 N N16 PKJ . . . F 3 -24.593 50.432 20.135 1 41.72 ? N16 PKJ 502 B 1 HETATM 23 N N22 PKJ . . . F 3 -26.298 50.3 18.767 1 37.39 ? N22 PKJ 502 B 1 HETATM 24 N N3 PKJ . . . F 3 -25.768 50.665 24.368 1 74.73 ? N3 PKJ 502 B 1 HETATM 25 O O1 PKJ . . . F 3 -26.167 51.75 22.383 1 64.52 ? O1 PKJ 502 B 1 HETATM 26 O O8 PKJ . . . F 3 -26.746 54.915 27.527 1 108.61 ? O8 PKJ 502 B 1 HETATM 27 O O10 PKJ . . . F 3 -25.537 53.024 28.449 1 95.77 ? O10 PKJ 502 B 1 HETATM 28 S S19 PKJ . . . F 3 -25.717 51.499 16.643 1 37.65 ? S19 PKJ 502 B 1 HETATM 29 S S14 PKJ . . . F 3 -26.822 49.073 21.139 1 50.6 ? S14 PKJ 502 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #