data_4PK6
#
_model_server_result.job_id            PtRkrzR3Ynd4Srzt9UuFtQ 
_model_server_result.datetime_utc      '2024-11-15 00:21:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pk6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    4PK6 
#
_exptl.entry_id    4PK6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.905 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[2-(3-chlorophenyl)ethyl]-3-(4-methylphenyl)imidazo[2,1-b][1,3]thiazole-5-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PK6 
_cell.length_a            84.08 
_cell.length_b            91.12 
_cell.length_c            135.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PK6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 328 A CYS 308 1_555 B SG CYS 328 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc1 A NE2 HIS 366 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N12 PKL . A PKL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc3 B NE2 HIS 366 B HIS 346 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc4 E FE HEM . B HEM 501 1_555 F N12 PKL . B PKL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
#
_chem_comp.formula           'C21 H18 Cl N3 O S' 
_chem_comp.formula_weight    395.905 
_chem_comp.id                PKL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[2-(3-chlorophenyl)ethyl]-3-(4-methylphenyl)imidazo[2,1-b][1,3]thiazole-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 S10 PKL sing 340 n y 
C9 C8 PKL doub 341 n y 
C3 C4 PKL doub 342 n y 
C3 C2 PKL sing 343 n y 
S10 C11 PKL sing 344 n y 
C1 C2 PKL sing 345 n n 
C4 C5 PKL sing 346 n y 
C2 C7 PKL doub 347 n y 
C5 C8 PKL sing 348 n n 
C5 C6 PKL doub 349 n y 
C7 C6 PKL sing 350 n y 
C8 N15 PKL sing 351 n y 
C11 N15 PKL sing 352 n y 
C11 N12 PKL doub 353 n y 
N15 C14 PKL sing 354 n y 
N12 C13 PKL sing 355 n y 
C14 C13 PKL doub 356 n y 
C14 C16 PKL sing 357 n n 
O17 C16 PKL doub 358 n n 
C16 N18 PKL sing 359 n n 
N18 C19 PKL sing 360 n n 
C19 C20 PKL sing 361 n n 
C22 C23 PKL doub 362 n y 
C22 C21 PKL sing 363 n y 
C23 C24 PKL sing 364 n y 
C20 C21 PKL sing 365 n n 
C21 C27 PKL doub 366 n y 
C24 C25 PKL doub 367 n y 
C27 C25 PKL sing 368 n y 
C25 CL1 PKL sing 369 n n 
C23 H1 PKL sing 370 n n 
C4 H2 PKL sing 371 n n 
C6 H3 PKL sing 372 n n 
C22 H4 PKL sing 373 n n 
C3 H5 PKL sing 374 n n 
C7 H6 PKL sing 375 n n 
C24 H7 PKL sing 376 n n 
C27 H8 PKL sing 377 n n 
C13 H9 PKL sing 378 n n 
C9 H10 PKL sing 379 n n 
C1 H11 PKL sing 380 n n 
C1 H12 PKL sing 381 n n 
C1 H13 PKL sing 382 n n 
C20 H14 PKL sing 383 n n 
C20 H15 PKL sing 384 n n 
C19 H16 PKL sing 385 n n 
C19 H17 PKL sing 386 n n 
N18 H18 PKL sing 387 n n 
#
_atom_sites.entry_id                     4PK6 
_atom_sites.fract_transf_matrix[1][1]    0.011893 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00737 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 404 HEM HEM . 
D 3 PKL A 1 502 1 PKL UNL . 
E 2 HEM B 1 501 404 HEM HEM . 
F 3 PKL B 1 502 2 PKL UNL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PKL . . . D 3 9.188 31.369 36.607 1 106.51 ? C23 PKL 502 A 1 
HETATM 2 C C4 PKL . . . D 3 9.916 29.46 30.752 1 46.08 ? C4 PKL 502 A 1 
HETATM 3 C C6 PKL . . . D 3 8.18 31.033 31.194 1 45.57 ? C6 PKL 502 A 1 
HETATM 4 C C22 PKL . . . D 3 9.954 30.24 36.413 1 102.04 ? C22 PKL 502 A 1 
HETATM 5 C C3 PKL . . . D 3 8.989 28.452 30.632 1 43.96 ? C3 PKL 502 A 1 
HETATM 6 C C7 PKL . . . D 3 7.252 30.023 31.066 1 43.72 ? C7 PKL 502 A 1 
HETATM 7 C C24 PKL . . . D 3 9.625 32.356 37.456 1 108.93 ? C24 PKL 502 A 1 
HETATM 8 C C27 PKL . . . D 3 11.6 31.057 37.902 1 103.29 ? C27 PKL 502 A 1 
HETATM 9 C C13 PKL . . . D 3 13.196 31.611 33.55 1 52.57 ? C13 PKL 502 A 1 
HETATM 10 C C5 PKL . . . D 3 9.518 30.747 31.043 1 46.88 ? C5 PKL 502 A 1 
HETATM 11 C C2 PKL . . . D 3 7.654 28.737 30.792 1 42.77 ? C2 PKL 502 A 1 
HETATM 12 C C21 PKL . . . D 3 11.165 30.067 37.05 1 92.89 ? C21 PKL 502 A 1 
HETATM 13 C C25 PKL . . . D 3 10.83 32.183 38.094 1 113.46 ? C25 PKL 502 A 1 
HETATM 14 C C14 PKL . . . D 3 12.047 30.991 33.099 1 52.38 ? C14 PKL 502 A 1 
HETATM 15 C C11 PKL . . . D 3 12.406 32.797 31.913 1 51.04 ? C11 PKL 502 A 1 
HETATM 16 C C9 PKL . . . D 3 10.612 32.818 30.366 1 48.87 ? C9 PKL 502 A 1 
HETATM 17 C C8 PKL . . . D 3 10.544 31.759 31.184 1 48.14 ? C8 PKL 502 A 1 
HETATM 18 C C16 PKL . . . D 3 11.459 29.814 33.615 1 55.27 ? C16 PKL 502 A 1 
HETATM 19 C C1 PKL . . . D 3 6.658 27.649 30.663 1 42.08 ? C1 PKL 502 A 1 
HETATM 20 C C20 PKL . . . D 3 12.001 28.846 36.844 1 77.64 ? C20 PKL 502 A 1 
HETATM 21 C C19 PKL . . . D 3 11.865 28.266 35.454 1 66.19 ? C19 PKL 502 A 1 
HETATM 22 N N15 PKL . . . D 3 11.583 31.78 32.061 1 50.07 ? N15 PKL 502 A 1 
HETATM 23 N N12 PKL . . . D 3 13.406 32.746 32.785 1 51.62 ? N12 PKL 502 A 1 
HETATM 24 N N18 PKL . . . D 3 12.357 29.138 34.411 1 61.18 ? N18 PKL 502 A 1 
HETATM 25 O O17 PKL . . . D 3 10.304 29.457 33.47 1 54.94 ? O17 PKL 502 A 1 
HETATM 26 S S10 PKL . . . D 3 11.936 33.914 30.614 1 50.53 ? S10 PKL 502 A 1 
HETATM 27 CL CL1 PKL . . . D 3 11.374 33.415 39.158 1 149.1 ? CL1 PKL 502 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#