data_4PKI # _model_server_result.job_id xmVk-XzTzEyOPiyUjBXlOw _model_server_result.datetime_utc '2024-12-14 12:17:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1401}' # _entry.id 4PKI # _exptl.entry_id 4PKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PKI _cell.length_a 69.393 _cell.length_b 81.211 _cell.length_c 170.708 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 74 A GLU 72 1_555 A N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C HIC 75 A HIC 73 1_555 A N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A OE1 GLU 169 A GLU 167 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 C O3G ATP . A ATP 401 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 C O2B ATP . A ATP 401 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 D CA CA . A CA 402 1_555 G O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 D CA CA . A CA 402 1_555 G O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 D CA CA . A CA 402 1_555 G O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc7 D CA CA . A CA 402 1_555 G O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc8 D CA CA . A CA 402 1_555 G O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc9 E CA CA . A CA 403 1_555 B OD1 ASP 85 G ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc10 E CA CA . A CA 403 1_555 B OD2 ASP 85 G ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc11 E CA CA . A CA 403 1_555 B O GLY 90 G GLY 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc12 E CA CA . A CA 403 1_555 B O ALA 92 G ALA 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc13 E CA CA . A CA 403 1_555 H O HOH . G HOH 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 E CA CA . A CA 403 1_555 H O HOH . G HOH 1528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc15 B O GLY 41 G GLY 92 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc16 B OD1 ASP 42 G ASP 93 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc17 B OE1 GLU 73 G GLU 124 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc18 B OE2 GLU 73 G GLU 124 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc19 B O VAL 121 G VAL 172 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc20 F CA CA . G CA 1401 1_555 H O HOH . G HOH 1521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc21 F CA CA . G CA 1401 1_555 H O HOH . G HOH 1574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4PKI _atom_sites.fract_transf_matrix[1][1] 0.014411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 401 400 ATP ATP . D 4 CA A 1 402 401 CA CA . E 4 CA A 1 403 200 CA CA . F 4 CA G 1 1401 201 CA CA . G 5 HOH A 1 501 52 HOH HOH . G 5 HOH A 2 502 45 HOH HOH . G 5 HOH A 3 503 80 HOH HOH . G 5 HOH A 4 504 143 HOH HOH . G 5 HOH A 5 505 133 HOH HOH . G 5 HOH A 6 506 56 HOH HOH . G 5 HOH A 7 507 12 HOH HOH . G 5 HOH A 8 508 202 HOH HOH . G 5 HOH A 9 509 147 HOH HOH . G 5 HOH A 10 510 1 HOH HOH . G 5 HOH A 11 511 2 HOH HOH . G 5 HOH A 12 512 3 HOH HOH . G 5 HOH A 13 513 4 HOH HOH . G 5 HOH A 14 514 5 HOH HOH . G 5 HOH A 15 515 6 HOH HOH . G 5 HOH A 16 516 7 HOH HOH . G 5 HOH A 17 517 8 HOH HOH . G 5 HOH A 18 518 9 HOH HOH . G 5 HOH A 19 519 11 HOH HOH . G 5 HOH A 20 520 13 HOH HOH . G 5 HOH A 21 521 14 HOH HOH . G 5 HOH A 22 522 15 HOH HOH . G 5 HOH A 23 523 18 HOH HOH . G 5 HOH A 24 524 19 HOH HOH . G 5 HOH A 25 525 20 HOH HOH . G 5 HOH A 26 526 21 HOH HOH . G 5 HOH A 27 527 23 HOH HOH . G 5 HOH A 28 528 24 HOH HOH . G 5 HOH A 29 529 25 HOH HOH . G 5 HOH A 30 530 26 HOH HOH . G 5 HOH A 31 531 31 HOH HOH . G 5 HOH A 32 532 32 HOH HOH . G 5 HOH A 33 533 35 HOH HOH . G 5 HOH A 34 534 36 HOH HOH . G 5 HOH A 35 535 37 HOH HOH . G 5 HOH A 36 536 38 HOH HOH . G 5 HOH A 37 537 39 HOH HOH . G 5 HOH A 38 538 49 HOH HOH . G 5 HOH A 39 539 50 HOH HOH . G 5 HOH A 40 540 54 HOH HOH . G 5 HOH A 41 541 58 HOH HOH . G 5 HOH A 42 542 65 HOH HOH . G 5 HOH A 43 543 66 HOH HOH . G 5 HOH A 44 544 67 HOH HOH . G 5 HOH A 45 545 68 HOH HOH . G 5 HOH A 46 546 69 HOH HOH . G 5 HOH A 47 547 71 HOH HOH . G 5 HOH A 48 548 72 HOH HOH . G 5 HOH A 49 549 73 HOH HOH . G 5 HOH A 50 550 77 HOH HOH . G 5 HOH A 51 551 79 HOH HOH . G 5 HOH A 52 552 81 HOH HOH . G 5 HOH A 53 553 87 HOH HOH . G 5 HOH A 54 554 89 HOH HOH . G 5 HOH A 55 555 91 HOH HOH . G 5 HOH A 56 556 92 HOH HOH . G 5 HOH A 57 557 94 HOH HOH . G 5 HOH A 58 558 95 HOH HOH . G 5 HOH A 59 559 97 HOH HOH . G 5 HOH A 60 560 99 HOH HOH . G 5 HOH A 61 561 101 HOH HOH . G 5 HOH A 62 562 102 HOH HOH . G 5 HOH A 63 563 103 HOH HOH . G 5 HOH A 64 564 105 HOH HOH . G 5 HOH A 65 565 108 HOH HOH . G 5 HOH A 66 566 109 HOH HOH . G 5 HOH A 67 567 110 HOH HOH . G 5 HOH A 68 568 113 HOH HOH . G 5 HOH A 69 569 114 HOH HOH . G 5 HOH A 70 570 115 HOH HOH . G 5 HOH A 71 571 116 HOH HOH . G 5 HOH A 72 572 118 HOH HOH . G 5 HOH A 73 573 119 HOH HOH . G 5 HOH A 74 574 125 HOH HOH . G 5 HOH A 75 575 128 HOH HOH . G 5 HOH A 76 576 129 HOH HOH . G 5 HOH A 77 577 130 HOH HOH . G 5 HOH A 78 578 131 HOH HOH . G 5 HOH A 79 579 132 HOH HOH . G 5 HOH A 80 580 134 HOH HOH . G 5 HOH A 81 581 136 HOH HOH . G 5 HOH A 82 582 139 HOH HOH . G 5 HOH A 83 583 145 HOH HOH . G 5 HOH A 84 584 146 HOH HOH . G 5 HOH A 85 585 151 HOH HOH . G 5 HOH A 86 586 153 HOH HOH . G 5 HOH A 87 587 154 HOH HOH . G 5 HOH A 88 588 157 HOH HOH . G 5 HOH A 89 589 158 HOH HOH . G 5 HOH A 90 590 159 HOH HOH . G 5 HOH A 91 591 160 HOH HOH . G 5 HOH A 92 592 163 HOH HOH . G 5 HOH A 93 593 165 HOH HOH . G 5 HOH A 94 594 167 HOH HOH . G 5 HOH A 95 595 169 HOH HOH . G 5 HOH A 96 596 170 HOH HOH . G 5 HOH A 97 597 171 HOH HOH . G 5 HOH A 98 598 178 HOH HOH . G 5 HOH A 99 599 181 HOH HOH . G 5 HOH A 100 600 182 HOH HOH . G 5 HOH A 101 601 185 HOH HOH . G 5 HOH A 102 602 186 HOH HOH . G 5 HOH A 103 603 189 HOH HOH . G 5 HOH A 104 604 192 HOH HOH . G 5 HOH A 105 605 194 HOH HOH . G 5 HOH A 106 606 195 HOH HOH . G 5 HOH A 107 607 196 HOH HOH . G 5 HOH A 108 608 198 HOH HOH . G 5 HOH A 109 609 200 HOH HOH . G 5 HOH A 110 610 203 HOH HOH . G 5 HOH A 111 611 206 HOH HOH . G 5 HOH A 112 612 207 HOH HOH . G 5 HOH A 113 613 210 HOH HOH . H 5 HOH G 1 1501 122 HOH HOH . H 5 HOH G 2 1502 51 HOH HOH . H 5 HOH G 3 1503 83 HOH HOH . H 5 HOH G 4 1504 29 HOH HOH . H 5 HOH G 5 1505 43 HOH HOH . H 5 HOH G 6 1506 188 HOH HOH . H 5 HOH G 7 1507 138 HOH HOH . H 5 HOH G 8 1508 86 HOH HOH . H 5 HOH G 9 1509 42 HOH HOH . H 5 HOH G 10 1510 16 HOH HOH . H 5 HOH G 11 1511 177 HOH HOH . H 5 HOH G 12 1512 172 HOH HOH . H 5 HOH G 13 1513 30 HOH HOH . H 5 HOH G 14 1514 191 HOH HOH . H 5 HOH G 15 1515 111 HOH HOH . H 5 HOH G 16 1516 209 HOH HOH . H 5 HOH G 17 1517 44 HOH HOH . H 5 HOH G 18 1518 199 HOH HOH . H 5 HOH G 19 1519 175 HOH HOH . H 5 HOH G 20 1520 117 HOH HOH . H 5 HOH G 21 1521 10 HOH HOH . H 5 HOH G 22 1522 17 HOH HOH . H 5 HOH G 23 1523 22 HOH HOH . H 5 HOH G 24 1524 27 HOH HOH . H 5 HOH G 25 1525 28 HOH HOH . H 5 HOH G 26 1526 33 HOH HOH . H 5 HOH G 27 1527 34 HOH HOH . H 5 HOH G 28 1528 40 HOH HOH . H 5 HOH G 29 1529 41 HOH HOH . H 5 HOH G 30 1530 46 HOH HOH . H 5 HOH G 31 1531 47 HOH HOH . H 5 HOH G 32 1532 48 HOH HOH . H 5 HOH G 33 1533 53 HOH HOH . H 5 HOH G 34 1534 55 HOH HOH . H 5 HOH G 35 1535 57 HOH HOH . H 5 HOH G 36 1536 59 HOH HOH . H 5 HOH G 37 1537 60 HOH HOH . H 5 HOH G 38 1538 61 HOH HOH . H 5 HOH G 39 1539 62 HOH HOH . H 5 HOH G 40 1540 63 HOH HOH . H 5 HOH G 41 1541 64 HOH HOH . H 5 HOH G 42 1542 70 HOH HOH . H 5 HOH G 43 1543 74 HOH HOH . H 5 HOH G 44 1544 75 HOH HOH . H 5 HOH G 45 1545 76 HOH HOH . H 5 HOH G 46 1546 78 HOH HOH . H 5 HOH G 47 1547 82 HOH HOH . H 5 HOH G 48 1548 84 HOH HOH . H 5 HOH G 49 1549 85 HOH HOH . H 5 HOH G 50 1550 88 HOH HOH . H 5 HOH G 51 1551 90 HOH HOH . H 5 HOH G 52 1552 93 HOH HOH . H 5 HOH G 53 1553 96 HOH HOH . H 5 HOH G 54 1554 98 HOH HOH . H 5 HOH G 55 1555 100 HOH HOH . H 5 HOH G 56 1556 104 HOH HOH . H 5 HOH G 57 1557 106 HOH HOH . H 5 HOH G 58 1558 107 HOH HOH . H 5 HOH G 59 1559 112 HOH HOH . H 5 HOH G 60 1560 120 HOH HOH . H 5 HOH G 61 1561 121 HOH HOH . H 5 HOH G 62 1562 123 HOH HOH . H 5 HOH G 63 1563 124 HOH HOH . H 5 HOH G 64 1564 126 HOH HOH . H 5 HOH G 65 1565 127 HOH HOH . H 5 HOH G 66 1566 135 HOH HOH . H 5 HOH G 67 1567 137 HOH HOH . H 5 HOH G 68 1568 140 HOH HOH . H 5 HOH G 69 1569 141 HOH HOH . H 5 HOH G 70 1570 142 HOH HOH . H 5 HOH G 71 1571 148 HOH HOH . H 5 HOH G 72 1572 149 HOH HOH . H 5 HOH G 73 1573 150 HOH HOH . H 5 HOH G 74 1574 152 HOH HOH . H 5 HOH G 75 1575 155 HOH HOH . H 5 HOH G 76 1576 156 HOH HOH . H 5 HOH G 77 1577 161 HOH HOH . H 5 HOH G 78 1578 162 HOH HOH . H 5 HOH G 79 1579 164 HOH HOH . H 5 HOH G 80 1580 166 HOH HOH . H 5 HOH G 81 1581 168 HOH HOH . H 5 HOH G 82 1582 173 HOH HOH . H 5 HOH G 83 1583 174 HOH HOH . H 5 HOH G 84 1584 176 HOH HOH . H 5 HOH G 85 1585 179 HOH HOH . H 5 HOH G 86 1586 183 HOH HOH . H 5 HOH G 87 1587 184 HOH HOH . H 5 HOH G 88 1588 187 HOH HOH . H 5 HOH G 89 1589 190 HOH HOH . H 5 HOH G 90 1590 193 HOH HOH . H 5 HOH G 91 1591 197 HOH HOH . H 5 HOH G 92 1592 201 HOH HOH . H 5 HOH G 93 1593 204 HOH HOH . H 5 HOH G 94 1594 205 HOH HOH . H 5 HOH G 95 1595 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 9.084 _atom_site.Cartn_y 14.794 _atom_site.Cartn_z 6.836 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1401 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #