data_4PKI
#
_model_server_result.job_id            lpiBKiHPaL_Xm5C33uFZ8g 
_model_server_result.datetime_utc      '2024-12-08 10:29:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4PKI 
#
_exptl.entry_id    4PKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PKI 
_cell.length_a            69.393 
_cell.length_b            81.211 
_cell.length_c            170.708 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 74 A GLU 72 1_555 A N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 A C HIC 75 A HIC 73 1_555 A N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
metalc ? metalc1 A OE1 GLU 169 A GLU 167 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 C O3G ATP . A ATP 401 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc3 C O2B ATP . A ATP 401 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc4 D CA CA . A CA 402 1_555 G O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc5 D CA CA . A CA 402 1_555 G O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc6 D CA CA . A CA 402 1_555 G O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc7 D CA CA . A CA 402 1_555 G O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc8 D CA CA . A CA 402 1_555 G O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc9 E CA CA . A CA 403 1_555 B OD1 ASP 85 G ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc10 E CA CA . A CA 403 1_555 B OD2 ASP 85 G ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc11 E CA CA . A CA 403 1_555 B O GLY 90 G GLY 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc12 E CA CA . A CA 403 1_555 B O ALA 92 G ALA 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc13 E CA CA . A CA 403 1_555 H O HOH . G HOH 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc14 E CA CA . A CA 403 1_555 H O HOH . G HOH 1528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc15 B O GLY 41 G GLY 92 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc16 B OD1 ASP 42 G ASP 93 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc17 B OE1 GLU 73 G GLU 124 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc18 B OE2 GLU 73 G GLU 124 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc19 B O VAL 121 G VAL 172 1_555 F CA CA . G CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc20 F CA CA . G CA 1401 1_555 H O HOH . G HOH 1521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc21 F CA CA . G CA 1401 1_555 H O HOH . G HOH 1574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4PKI 
_atom_sites.fract_transf_matrix[1][1]    0.014411 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012314 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005858 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ATP A 1 401 400 ATP ATP . 
D 4 CA A 1 402 401 CA CA . 
E 4 CA A 1 403 200 CA CA . 
F 4 CA G 1 1401 201 CA CA . 
G 5 HOH A 1 501 52 HOH HOH . 
G 5 HOH A 2 502 45 HOH HOH . 
G 5 HOH A 3 503 80 HOH HOH . 
G 5 HOH A 4 504 143 HOH HOH . 
G 5 HOH A 5 505 133 HOH HOH . 
G 5 HOH A 6 506 56 HOH HOH . 
G 5 HOH A 7 507 12 HOH HOH . 
G 5 HOH A 8 508 202 HOH HOH . 
G 5 HOH A 9 509 147 HOH HOH . 
G 5 HOH A 10 510 1 HOH HOH . 
G 5 HOH A 11 511 2 HOH HOH . 
G 5 HOH A 12 512 3 HOH HOH . 
G 5 HOH A 13 513 4 HOH HOH . 
G 5 HOH A 14 514 5 HOH HOH . 
G 5 HOH A 15 515 6 HOH HOH . 
G 5 HOH A 16 516 7 HOH HOH . 
G 5 HOH A 17 517 8 HOH HOH . 
G 5 HOH A 18 518 9 HOH HOH . 
G 5 HOH A 19 519 11 HOH HOH . 
G 5 HOH A 20 520 13 HOH HOH . 
G 5 HOH A 21 521 14 HOH HOH . 
G 5 HOH A 22 522 15 HOH HOH . 
G 5 HOH A 23 523 18 HOH HOH . 
G 5 HOH A 24 524 19 HOH HOH . 
G 5 HOH A 25 525 20 HOH HOH . 
G 5 HOH A 26 526 21 HOH HOH . 
G 5 HOH A 27 527 23 HOH HOH . 
G 5 HOH A 28 528 24 HOH HOH . 
G 5 HOH A 29 529 25 HOH HOH . 
G 5 HOH A 30 530 26 HOH HOH . 
G 5 HOH A 31 531 31 HOH HOH . 
G 5 HOH A 32 532 32 HOH HOH . 
G 5 HOH A 33 533 35 HOH HOH . 
G 5 HOH A 34 534 36 HOH HOH . 
G 5 HOH A 35 535 37 HOH HOH . 
G 5 HOH A 36 536 38 HOH HOH . 
G 5 HOH A 37 537 39 HOH HOH . 
G 5 HOH A 38 538 49 HOH HOH . 
G 5 HOH A 39 539 50 HOH HOH . 
G 5 HOH A 40 540 54 HOH HOH . 
G 5 HOH A 41 541 58 HOH HOH . 
G 5 HOH A 42 542 65 HOH HOH . 
G 5 HOH A 43 543 66 HOH HOH . 
G 5 HOH A 44 544 67 HOH HOH . 
G 5 HOH A 45 545 68 HOH HOH . 
G 5 HOH A 46 546 69 HOH HOH . 
G 5 HOH A 47 547 71 HOH HOH . 
G 5 HOH A 48 548 72 HOH HOH . 
G 5 HOH A 49 549 73 HOH HOH . 
G 5 HOH A 50 550 77 HOH HOH . 
G 5 HOH A 51 551 79 HOH HOH . 
G 5 HOH A 52 552 81 HOH HOH . 
G 5 HOH A 53 553 87 HOH HOH . 
G 5 HOH A 54 554 89 HOH HOH . 
G 5 HOH A 55 555 91 HOH HOH . 
G 5 HOH A 56 556 92 HOH HOH . 
G 5 HOH A 57 557 94 HOH HOH . 
G 5 HOH A 58 558 95 HOH HOH . 
G 5 HOH A 59 559 97 HOH HOH . 
G 5 HOH A 60 560 99 HOH HOH . 
G 5 HOH A 61 561 101 HOH HOH . 
G 5 HOH A 62 562 102 HOH HOH . 
G 5 HOH A 63 563 103 HOH HOH . 
G 5 HOH A 64 564 105 HOH HOH . 
G 5 HOH A 65 565 108 HOH HOH . 
G 5 HOH A 66 566 109 HOH HOH . 
G 5 HOH A 67 567 110 HOH HOH . 
G 5 HOH A 68 568 113 HOH HOH . 
G 5 HOH A 69 569 114 HOH HOH . 
G 5 HOH A 70 570 115 HOH HOH . 
G 5 HOH A 71 571 116 HOH HOH . 
G 5 HOH A 72 572 118 HOH HOH . 
G 5 HOH A 73 573 119 HOH HOH . 
G 5 HOH A 74 574 125 HOH HOH . 
G 5 HOH A 75 575 128 HOH HOH . 
G 5 HOH A 76 576 129 HOH HOH . 
G 5 HOH A 77 577 130 HOH HOH . 
G 5 HOH A 78 578 131 HOH HOH . 
G 5 HOH A 79 579 132 HOH HOH . 
G 5 HOH A 80 580 134 HOH HOH . 
G 5 HOH A 81 581 136 HOH HOH . 
G 5 HOH A 82 582 139 HOH HOH . 
G 5 HOH A 83 583 145 HOH HOH . 
G 5 HOH A 84 584 146 HOH HOH . 
G 5 HOH A 85 585 151 HOH HOH . 
G 5 HOH A 86 586 153 HOH HOH . 
G 5 HOH A 87 587 154 HOH HOH . 
G 5 HOH A 88 588 157 HOH HOH . 
G 5 HOH A 89 589 158 HOH HOH . 
G 5 HOH A 90 590 159 HOH HOH . 
G 5 HOH A 91 591 160 HOH HOH . 
G 5 HOH A 92 592 163 HOH HOH . 
G 5 HOH A 93 593 165 HOH HOH . 
G 5 HOH A 94 594 167 HOH HOH . 
G 5 HOH A 95 595 169 HOH HOH . 
G 5 HOH A 96 596 170 HOH HOH . 
G 5 HOH A 97 597 171 HOH HOH . 
G 5 HOH A 98 598 178 HOH HOH . 
G 5 HOH A 99 599 181 HOH HOH . 
G 5 HOH A 100 600 182 HOH HOH . 
G 5 HOH A 101 601 185 HOH HOH . 
G 5 HOH A 102 602 186 HOH HOH . 
G 5 HOH A 103 603 189 HOH HOH . 
G 5 HOH A 104 604 192 HOH HOH . 
G 5 HOH A 105 605 194 HOH HOH . 
G 5 HOH A 106 606 195 HOH HOH . 
G 5 HOH A 107 607 196 HOH HOH . 
G 5 HOH A 108 608 198 HOH HOH . 
G 5 HOH A 109 609 200 HOH HOH . 
G 5 HOH A 110 610 203 HOH HOH . 
G 5 HOH A 111 611 206 HOH HOH . 
G 5 HOH A 112 612 207 HOH HOH . 
G 5 HOH A 113 613 210 HOH HOH . 
H 5 HOH G 1 1501 122 HOH HOH . 
H 5 HOH G 2 1502 51 HOH HOH . 
H 5 HOH G 3 1503 83 HOH HOH . 
H 5 HOH G 4 1504 29 HOH HOH . 
H 5 HOH G 5 1505 43 HOH HOH . 
H 5 HOH G 6 1506 188 HOH HOH . 
H 5 HOH G 7 1507 138 HOH HOH . 
H 5 HOH G 8 1508 86 HOH HOH . 
H 5 HOH G 9 1509 42 HOH HOH . 
H 5 HOH G 10 1510 16 HOH HOH . 
H 5 HOH G 11 1511 177 HOH HOH . 
H 5 HOH G 12 1512 172 HOH HOH . 
H 5 HOH G 13 1513 30 HOH HOH . 
H 5 HOH G 14 1514 191 HOH HOH . 
H 5 HOH G 15 1515 111 HOH HOH . 
H 5 HOH G 16 1516 209 HOH HOH . 
H 5 HOH G 17 1517 44 HOH HOH . 
H 5 HOH G 18 1518 199 HOH HOH . 
H 5 HOH G 19 1519 175 HOH HOH . 
H 5 HOH G 20 1520 117 HOH HOH . 
H 5 HOH G 21 1521 10 HOH HOH . 
H 5 HOH G 22 1522 17 HOH HOH . 
H 5 HOH G 23 1523 22 HOH HOH . 
H 5 HOH G 24 1524 27 HOH HOH . 
H 5 HOH G 25 1525 28 HOH HOH . 
H 5 HOH G 26 1526 33 HOH HOH . 
H 5 HOH G 27 1527 34 HOH HOH . 
H 5 HOH G 28 1528 40 HOH HOH . 
H 5 HOH G 29 1529 41 HOH HOH . 
H 5 HOH G 30 1530 46 HOH HOH . 
H 5 HOH G 31 1531 47 HOH HOH . 
H 5 HOH G 32 1532 48 HOH HOH . 
H 5 HOH G 33 1533 53 HOH HOH . 
H 5 HOH G 34 1534 55 HOH HOH . 
H 5 HOH G 35 1535 57 HOH HOH . 
H 5 HOH G 36 1536 59 HOH HOH . 
H 5 HOH G 37 1537 60 HOH HOH . 
H 5 HOH G 38 1538 61 HOH HOH . 
H 5 HOH G 39 1539 62 HOH HOH . 
H 5 HOH G 40 1540 63 HOH HOH . 
H 5 HOH G 41 1541 64 HOH HOH . 
H 5 HOH G 42 1542 70 HOH HOH . 
H 5 HOH G 43 1543 74 HOH HOH . 
H 5 HOH G 44 1544 75 HOH HOH . 
H 5 HOH G 45 1545 76 HOH HOH . 
H 5 HOH G 46 1546 78 HOH HOH . 
H 5 HOH G 47 1547 82 HOH HOH . 
H 5 HOH G 48 1548 84 HOH HOH . 
H 5 HOH G 49 1549 85 HOH HOH . 
H 5 HOH G 50 1550 88 HOH HOH . 
H 5 HOH G 51 1551 90 HOH HOH . 
H 5 HOH G 52 1552 93 HOH HOH . 
H 5 HOH G 53 1553 96 HOH HOH . 
H 5 HOH G 54 1554 98 HOH HOH . 
H 5 HOH G 55 1555 100 HOH HOH . 
H 5 HOH G 56 1556 104 HOH HOH . 
H 5 HOH G 57 1557 106 HOH HOH . 
H 5 HOH G 58 1558 107 HOH HOH . 
H 5 HOH G 59 1559 112 HOH HOH . 
H 5 HOH G 60 1560 120 HOH HOH . 
H 5 HOH G 61 1561 121 HOH HOH . 
H 5 HOH G 62 1562 123 HOH HOH . 
H 5 HOH G 63 1563 124 HOH HOH . 
H 5 HOH G 64 1564 126 HOH HOH . 
H 5 HOH G 65 1565 127 HOH HOH . 
H 5 HOH G 66 1566 135 HOH HOH . 
H 5 HOH G 67 1567 137 HOH HOH . 
H 5 HOH G 68 1568 140 HOH HOH . 
H 5 HOH G 69 1569 141 HOH HOH . 
H 5 HOH G 70 1570 142 HOH HOH . 
H 5 HOH G 71 1571 148 HOH HOH . 
H 5 HOH G 72 1572 149 HOH HOH . 
H 5 HOH G 73 1573 150 HOH HOH . 
H 5 HOH G 74 1574 152 HOH HOH . 
H 5 HOH G 75 1575 155 HOH HOH . 
H 5 HOH G 76 1576 156 HOH HOH . 
H 5 HOH G 77 1577 161 HOH HOH . 
H 5 HOH G 78 1578 162 HOH HOH . 
H 5 HOH G 79 1579 164 HOH HOH . 
H 5 HOH G 80 1580 166 HOH HOH . 
H 5 HOH G 81 1581 168 HOH HOH . 
H 5 HOH G 82 1582 173 HOH HOH . 
H 5 HOH G 83 1583 174 HOH HOH . 
H 5 HOH G 84 1584 176 HOH HOH . 
H 5 HOH G 85 1585 179 HOH HOH . 
H 5 HOH G 86 1586 183 HOH HOH . 
H 5 HOH G 87 1587 184 HOH HOH . 
H 5 HOH G 88 1588 187 HOH HOH . 
H 5 HOH G 89 1589 190 HOH HOH . 
H 5 HOH G 90 1590 193 HOH HOH . 
H 5 HOH G 91 1591 197 HOH HOH . 
H 5 HOH G 92 1592 201 HOH HOH . 
H 5 HOH G 93 1593 204 HOH HOH . 
H 5 HOH G 94 1594 205 HOH HOH . 
H 5 HOH G 95 1595 208 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -1.679 
_atom_site.Cartn_y               5.059 
_atom_site.Cartn_z               -17.977 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        37.05 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#