data_4PKQ
#
_model_server_result.job_id            WigSu3K0OFZr0w3yKpk10g 
_model_server_result.datetime_utc      '2024-11-23 00:59:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pkq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    4PKQ 
#
_exptl.entry_id    4PKQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PKQ 
_cell.length_a            56.897 
_cell.length_b            74.544 
_cell.length_c            139.461 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PKQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 425 A HIS 686 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc2 A NE2 HIS 429 A HIS 690 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc3 A OE1 GLU 474 A GLU 735 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc4 B ZN ZN . A ZN 801 1_555 E O HOH . A HOH 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc5 B ZN ZN . A ZN 801 1_555 E O HOH . A HOH 1048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     4PKQ 
_atom_sites.fract_transf_matrix[1][1]    0.017576 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013415 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00717 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 1 ZN ZN . 
C 3 PGE A 1 802 1 PGE PGE . 
D 4 EDO A 1 803 1 EDO EDO . 
E 5 HOH A 1 901 105 HOH HOH . 
E 5 HOH A 2 902 86 HOH HOH . 
E 5 HOH A 3 903 185 HOH HOH . 
E 5 HOH A 4 904 118 HOH HOH . 
E 5 HOH A 5 905 91 HOH HOH . 
E 5 HOH A 6 906 20 HOH HOH . 
E 5 HOH A 7 907 70 HOH HOH . 
E 5 HOH A 8 908 157 HOH HOH . 
E 5 HOH A 9 909 50 HOH HOH . 
E 5 HOH A 10 910 49 HOH HOH . 
E 5 HOH A 11 911 17 HOH HOH . 
E 5 HOH A 12 912 30 HOH HOH . 
E 5 HOH A 13 913 7 HOH HOH . 
E 5 HOH A 14 914 138 HOH HOH . 
E 5 HOH A 15 915 3 HOH HOH . 
E 5 HOH A 16 916 154 HOH HOH . 
E 5 HOH A 17 917 24 HOH HOH . 
E 5 HOH A 18 918 99 HOH HOH . 
E 5 HOH A 19 919 183 HOH HOH . 
E 5 HOH A 20 920 22 HOH HOH . 
E 5 HOH A 21 921 95 HOH HOH . 
E 5 HOH A 22 922 162 HOH HOH . 
E 5 HOH A 23 923 32 HOH HOH . 
E 5 HOH A 24 924 181 HOH HOH . 
E 5 HOH A 25 925 140 HOH HOH . 
E 5 HOH A 26 926 93 HOH HOH . 
E 5 HOH A 27 927 112 HOH HOH . 
E 5 HOH A 28 928 48 HOH HOH . 
E 5 HOH A 29 929 62 HOH HOH . 
E 5 HOH A 30 930 6 HOH HOH . 
E 5 HOH A 31 931 158 HOH HOH . 
E 5 HOH A 32 932 26 HOH HOH . 
E 5 HOH A 33 933 75 HOH HOH . 
E 5 HOH A 34 934 126 HOH HOH . 
E 5 HOH A 35 935 96 HOH HOH . 
E 5 HOH A 36 936 114 HOH HOH . 
E 5 HOH A 37 937 125 HOH HOH . 
E 5 HOH A 38 938 74 HOH HOH . 
E 5 HOH A 39 939 92 HOH HOH . 
E 5 HOH A 40 940 58 HOH HOH . 
E 5 HOH A 41 941 176 HOH HOH . 
E 5 HOH A 42 942 163 HOH HOH . 
E 5 HOH A 43 943 190 HOH HOH . 
E 5 HOH A 44 944 127 HOH HOH . 
E 5 HOH A 45 945 168 HOH HOH . 
E 5 HOH A 46 946 169 HOH HOH . 
E 5 HOH A 47 947 1 HOH HOH . 
E 5 HOH A 48 948 2 HOH HOH . 
E 5 HOH A 49 949 4 HOH HOH . 
E 5 HOH A 50 950 5 HOH HOH . 
E 5 HOH A 51 951 8 HOH HOH . 
E 5 HOH A 52 952 9 HOH HOH . 
E 5 HOH A 53 953 10 HOH HOH . 
E 5 HOH A 54 954 11 HOH HOH . 
E 5 HOH A 55 955 12 HOH HOH . 
E 5 HOH A 56 956 13 HOH HOH . 
E 5 HOH A 57 957 14 HOH HOH . 
E 5 HOH A 58 958 15 HOH HOH . 
E 5 HOH A 59 959 16 HOH HOH . 
E 5 HOH A 60 960 18 HOH HOH . 
E 5 HOH A 61 961 19 HOH HOH . 
E 5 HOH A 62 962 21 HOH HOH . 
E 5 HOH A 63 963 23 HOH HOH . 
E 5 HOH A 64 964 25 HOH HOH . 
E 5 HOH A 65 965 27 HOH HOH . 
E 5 HOH A 66 966 28 HOH HOH . 
E 5 HOH A 67 967 29 HOH HOH . 
E 5 HOH A 68 968 31 HOH HOH . 
E 5 HOH A 69 969 33 HOH HOH . 
E 5 HOH A 70 970 34 HOH HOH . 
E 5 HOH A 71 971 35 HOH HOH . 
E 5 HOH A 72 972 36 HOH HOH . 
E 5 HOH A 73 973 37 HOH HOH . 
E 5 HOH A 74 974 38 HOH HOH . 
E 5 HOH A 75 975 39 HOH HOH . 
E 5 HOH A 76 976 40 HOH HOH . 
E 5 HOH A 77 977 41 HOH HOH . 
E 5 HOH A 78 978 42 HOH HOH . 
E 5 HOH A 79 979 43 HOH HOH . 
E 5 HOH A 80 980 44 HOH HOH . 
E 5 HOH A 81 981 45 HOH HOH . 
E 5 HOH A 82 982 46 HOH HOH . 
E 5 HOH A 83 983 47 HOH HOH . 
E 5 HOH A 84 984 51 HOH HOH . 
E 5 HOH A 85 985 52 HOH HOH . 
E 5 HOH A 86 986 53 HOH HOH . 
E 5 HOH A 87 987 54 HOH HOH . 
E 5 HOH A 88 988 55 HOH HOH . 
E 5 HOH A 89 989 56 HOH HOH . 
E 5 HOH A 90 990 57 HOH HOH . 
E 5 HOH A 91 991 59 HOH HOH . 
E 5 HOH A 92 992 60 HOH HOH . 
E 5 HOH A 93 993 61 HOH HOH . 
E 5 HOH A 94 994 63 HOH HOH . 
E 5 HOH A 95 995 64 HOH HOH . 
E 5 HOH A 96 996 65 HOH HOH . 
E 5 HOH A 97 997 66 HOH HOH . 
E 5 HOH A 98 998 67 HOH HOH . 
E 5 HOH A 99 999 68 HOH HOH . 
E 5 HOH A 100 1000 69 HOH HOH . 
E 5 HOH A 101 1001 71 HOH HOH . 
E 5 HOH A 102 1002 72 HOH HOH . 
E 5 HOH A 103 1003 73 HOH HOH . 
E 5 HOH A 104 1004 76 HOH HOH . 
E 5 HOH A 105 1005 77 HOH HOH . 
E 5 HOH A 106 1006 78 HOH HOH . 
E 5 HOH A 107 1007 79 HOH HOH . 
E 5 HOH A 108 1008 80 HOH HOH . 
E 5 HOH A 109 1009 81 HOH HOH . 
E 5 HOH A 110 1010 82 HOH HOH . 
E 5 HOH A 111 1011 83 HOH HOH . 
E 5 HOH A 112 1012 84 HOH HOH . 
E 5 HOH A 113 1013 85 HOH HOH . 
E 5 HOH A 114 1014 87 HOH HOH . 
E 5 HOH A 115 1015 88 HOH HOH . 
E 5 HOH A 116 1016 89 HOH HOH . 
E 5 HOH A 117 1017 90 HOH HOH . 
E 5 HOH A 118 1018 94 HOH HOH . 
E 5 HOH A 119 1019 97 HOH HOH . 
E 5 HOH A 120 1020 98 HOH HOH . 
E 5 HOH A 121 1021 100 HOH HOH . 
E 5 HOH A 122 1022 101 HOH HOH . 
E 5 HOH A 123 1023 102 HOH HOH . 
E 5 HOH A 124 1024 103 HOH HOH . 
E 5 HOH A 125 1025 104 HOH HOH . 
E 5 HOH A 126 1026 106 HOH HOH . 
E 5 HOH A 127 1027 107 HOH HOH . 
E 5 HOH A 128 1028 108 HOH HOH . 
E 5 HOH A 129 1029 109 HOH HOH . 
E 5 HOH A 130 1030 110 HOH HOH . 
E 5 HOH A 131 1031 111 HOH HOH . 
E 5 HOH A 132 1032 113 HOH HOH . 
E 5 HOH A 133 1033 115 HOH HOH . 
E 5 HOH A 134 1034 116 HOH HOH . 
E 5 HOH A 135 1035 117 HOH HOH . 
E 5 HOH A 136 1036 119 HOH HOH . 
E 5 HOH A 137 1037 120 HOH HOH . 
E 5 HOH A 138 1038 121 HOH HOH . 
E 5 HOH A 139 1039 122 HOH HOH . 
E 5 HOH A 140 1040 123 HOH HOH . 
E 5 HOH A 141 1041 124 HOH HOH . 
E 5 HOH A 142 1042 128 HOH HOH . 
E 5 HOH A 143 1043 129 HOH HOH . 
E 5 HOH A 144 1044 130 HOH HOH . 
E 5 HOH A 145 1045 131 HOH HOH . 
E 5 HOH A 146 1046 132 HOH HOH . 
E 5 HOH A 147 1047 133 HOH HOH . 
E 5 HOH A 148 1048 134 HOH HOH . 
E 5 HOH A 149 1049 135 HOH HOH . 
E 5 HOH A 150 1050 136 HOH HOH . 
E 5 HOH A 151 1051 137 HOH HOH . 
E 5 HOH A 152 1052 139 HOH HOH . 
E 5 HOH A 153 1053 141 HOH HOH . 
E 5 HOH A 154 1054 142 HOH HOH . 
E 5 HOH A 155 1055 143 HOH HOH . 
E 5 HOH A 156 1056 144 HOH HOH . 
E 5 HOH A 157 1057 145 HOH HOH . 
E 5 HOH A 158 1058 146 HOH HOH . 
E 5 HOH A 159 1059 147 HOH HOH . 
E 5 HOH A 160 1060 148 HOH HOH . 
E 5 HOH A 161 1061 149 HOH HOH . 
E 5 HOH A 162 1062 150 HOH HOH . 
E 5 HOH A 163 1063 151 HOH HOH . 
E 5 HOH A 164 1064 152 HOH HOH . 
E 5 HOH A 165 1065 153 HOH HOH . 
E 5 HOH A 166 1066 155 HOH HOH . 
E 5 HOH A 167 1067 156 HOH HOH . 
E 5 HOH A 168 1068 159 HOH HOH . 
E 5 HOH A 169 1069 160 HOH HOH . 
E 5 HOH A 170 1070 161 HOH HOH . 
E 5 HOH A 171 1071 164 HOH HOH . 
E 5 HOH A 172 1072 165 HOH HOH . 
E 5 HOH A 173 1073 166 HOH HOH . 
E 5 HOH A 174 1074 167 HOH HOH . 
E 5 HOH A 175 1075 170 HOH HOH . 
E 5 HOH A 176 1076 171 HOH HOH . 
E 5 HOH A 177 1077 172 HOH HOH . 
E 5 HOH A 178 1078 173 HOH HOH . 
E 5 HOH A 179 1079 174 HOH HOH . 
E 5 HOH A 180 1080 175 HOH HOH . 
E 5 HOH A 181 1081 177 HOH HOH . 
E 5 HOH A 182 1082 178 HOH HOH . 
E 5 HOH A 183 1083 179 HOH HOH . 
E 5 HOH A 184 1084 180 HOH HOH . 
E 5 HOH A 185 1085 182 HOH HOH . 
E 5 HOH A 186 1086 184 HOH HOH . 
E 5 HOH A 187 1087 186 HOH HOH . 
E 5 HOH A 188 1088 187 HOH HOH . 
E 5 HOH A 189 1089 188 HOH HOH . 
E 5 HOH A 190 1090 189 HOH HOH . 
E 5 HOH A 191 1091 191 HOH HOH . 
E 5 HOH A 192 1092 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -3.874 48.14 -3.933 1 38.36 ? C1 EDO 803 A 1 
HETATM 2 O O1 EDO . . . D 4 -4.421 49.048 -4.91 1 46.8 ? O1 EDO 803 A 1 
HETATM 3 C C2 EDO . . . D 4 -2.386 48.397 -3.685 1 36.24 ? C2 EDO 803 A 1 
HETATM 4 O O2 EDO . . . D 4 -2.171 49.032 -2.414 1 40.55 ? O2 EDO 803 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#