data_4PKS
#
_model_server_result.job_id            s4KujmOezmReAtIxMmqkNw 
_model_server_result.datetime_utc      '2024-12-26 22:19:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":805}' 
#
_entry.id    4PKS 
#
_exptl.entry_id    4PKS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PKS 
_cell.length_a            51.92 
_cell.length_b            77.89 
_cell.length_c            134.77 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PKS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 425 A HIS 686 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc2 A NE2 HIS 429 A HIS 690 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 A OE1 GLU 474 A GLU 735 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc4 A OE2 GLU 474 A GLU 735 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc5 B ZN ZN . A ZN 801 1_555 C O4 30H . A 30H 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc6 B ZN ZN . A ZN 801 1_555 C O5 30H . A 30H 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 114 n n 
C1 C2 EDO sing 115 n n 
C1 H11 EDO sing 116 n n 
C1 H12 EDO sing 117 n n 
O1 HO1 EDO sing 118 n n 
C2 O2 EDO sing 119 n n 
C2 H21 EDO sing 120 n n 
C2 H22 EDO sing 121 n n 
O2 HO2 EDO sing 122 n n 
#
_atom_sites.entry_id                     4PKS 
_atom_sites.fract_transf_matrix[1][1]    0.01926 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012839 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00742 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 2 ZN ZN . 
C 3 30H A 1 802 1 30H E41 . 
D 4 GOL A 1 803 1 GOL GOL . 
E 5 EDO A 1 804 1 EDO EDO . 
F 5 EDO A 1 805 1 EDO EDO . 
G 6 HOH A 1 901 211 HOH HOH . 
G 6 HOH A 2 902 197 HOH HOH . 
G 6 HOH A 3 903 88 HOH HOH . 
G 6 HOH A 4 904 48 HOH HOH . 
G 6 HOH A 5 905 86 HOH HOH . 
G 6 HOH A 6 906 186 HOH HOH . 
G 6 HOH A 7 907 127 HOH HOH . 
G 6 HOH A 8 908 141 HOH HOH . 
G 6 HOH A 9 909 119 HOH HOH . 
G 6 HOH A 10 910 80 HOH HOH . 
G 6 HOH A 11 911 177 HOH HOH . 
G 6 HOH A 12 912 205 HOH HOH . 
G 6 HOH A 13 913 153 HOH HOH . 
G 6 HOH A 14 914 120 HOH HOH . 
G 6 HOH A 15 915 135 HOH HOH . 
G 6 HOH A 16 916 172 HOH HOH . 
G 6 HOH A 17 917 202 HOH HOH . 
G 6 HOH A 18 918 140 HOH HOH . 
G 6 HOH A 19 919 41 HOH HOH . 
G 6 HOH A 20 920 97 HOH HOH . 
G 6 HOH A 21 921 152 HOH HOH . 
G 6 HOH A 22 922 144 HOH HOH . 
G 6 HOH A 23 923 121 HOH HOH . 
G 6 HOH A 24 924 58 HOH HOH . 
G 6 HOH A 25 925 43 HOH HOH . 
G 6 HOH A 26 926 105 HOH HOH . 
G 6 HOH A 27 927 107 HOH HOH . 
G 6 HOH A 28 928 124 HOH HOH . 
G 6 HOH A 29 929 99 HOH HOH . 
G 6 HOH A 30 930 118 HOH HOH . 
G 6 HOH A 31 931 57 HOH HOH . 
G 6 HOH A 32 932 96 HOH HOH . 
G 6 HOH A 33 933 130 HOH HOH . 
G 6 HOH A 34 934 146 HOH HOH . 
G 6 HOH A 35 935 33 HOH HOH . 
G 6 HOH A 36 936 21 HOH HOH . 
G 6 HOH A 37 937 209 HOH HOH . 
G 6 HOH A 38 938 84 HOH HOH . 
G 6 HOH A 39 939 207 HOH HOH . 
G 6 HOH A 40 940 112 HOH HOH . 
G 6 HOH A 41 941 158 HOH HOH . 
G 6 HOH A 42 942 32 HOH HOH . 
G 6 HOH A 43 943 183 HOH HOH . 
G 6 HOH A 44 944 109 HOH HOH . 
G 6 HOH A 45 945 9 HOH HOH . 
G 6 HOH A 46 946 191 HOH HOH . 
G 6 HOH A 47 947 164 HOH HOH . 
G 6 HOH A 48 948 169 HOH HOH . 
G 6 HOH A 49 949 71 HOH HOH . 
G 6 HOH A 50 950 87 HOH HOH . 
G 6 HOH A 51 951 73 HOH HOH . 
G 6 HOH A 52 952 218 HOH HOH . 
G 6 HOH A 53 953 85 HOH HOH . 
G 6 HOH A 54 954 16 HOH HOH . 
G 6 HOH A 55 955 6 HOH HOH . 
G 6 HOH A 56 956 45 HOH HOH . 
G 6 HOH A 57 957 173 HOH HOH . 
G 6 HOH A 58 958 34 HOH HOH . 
G 6 HOH A 59 959 78 HOH HOH . 
G 6 HOH A 60 960 192 HOH HOH . 
G 6 HOH A 61 961 10 HOH HOH . 
G 6 HOH A 62 962 176 HOH HOH . 
G 6 HOH A 63 963 126 HOH HOH . 
G 6 HOH A 64 964 117 HOH HOH . 
G 6 HOH A 65 965 147 HOH HOH . 
G 6 HOH A 66 966 195 HOH HOH . 
G 6 HOH A 67 967 181 HOH HOH . 
G 6 HOH A 68 968 134 HOH HOH . 
G 6 HOH A 69 969 149 HOH HOH . 
G 6 HOH A 70 970 219 HOH HOH . 
G 6 HOH A 71 971 136 HOH HOH . 
G 6 HOH A 72 972 1 HOH HOH . 
G 6 HOH A 73 973 2 HOH HOH . 
G 6 HOH A 74 974 3 HOH HOH . 
G 6 HOH A 75 975 4 HOH HOH . 
G 6 HOH A 76 976 5 HOH HOH . 
G 6 HOH A 77 977 7 HOH HOH . 
G 6 HOH A 78 978 8 HOH HOH . 
G 6 HOH A 79 979 11 HOH HOH . 
G 6 HOH A 80 980 12 HOH HOH . 
G 6 HOH A 81 981 13 HOH HOH . 
G 6 HOH A 82 982 14 HOH HOH . 
G 6 HOH A 83 983 15 HOH HOH . 
G 6 HOH A 84 984 17 HOH HOH . 
G 6 HOH A 85 985 18 HOH HOH . 
G 6 HOH A 86 986 19 HOH HOH . 
G 6 HOH A 87 987 20 HOH HOH . 
G 6 HOH A 88 988 22 HOH HOH . 
G 6 HOH A 89 989 23 HOH HOH . 
G 6 HOH A 90 990 24 HOH HOH . 
G 6 HOH A 91 991 25 HOH HOH . 
G 6 HOH A 92 992 26 HOH HOH . 
G 6 HOH A 93 993 27 HOH HOH . 
G 6 HOH A 94 994 28 HOH HOH . 
G 6 HOH A 95 995 29 HOH HOH . 
G 6 HOH A 96 996 30 HOH HOH . 
G 6 HOH A 97 997 31 HOH HOH . 
G 6 HOH A 98 998 35 HOH HOH . 
G 6 HOH A 99 999 36 HOH HOH . 
G 6 HOH A 100 1000 37 HOH HOH . 
G 6 HOH A 101 1001 38 HOH HOH . 
G 6 HOH A 102 1002 39 HOH HOH . 
G 6 HOH A 103 1003 40 HOH HOH . 
G 6 HOH A 104 1004 42 HOH HOH . 
G 6 HOH A 105 1005 44 HOH HOH . 
G 6 HOH A 106 1006 46 HOH HOH . 
G 6 HOH A 107 1007 47 HOH HOH . 
G 6 HOH A 108 1008 49 HOH HOH . 
G 6 HOH A 109 1009 50 HOH HOH . 
G 6 HOH A 110 1010 51 HOH HOH . 
G 6 HOH A 111 1011 52 HOH HOH . 
G 6 HOH A 112 1012 53 HOH HOH . 
G 6 HOH A 113 1013 54 HOH HOH . 
G 6 HOH A 114 1014 55 HOH HOH . 
G 6 HOH A 115 1015 56 HOH HOH . 
G 6 HOH A 116 1016 59 HOH HOH . 
G 6 HOH A 117 1017 60 HOH HOH . 
G 6 HOH A 118 1018 61 HOH HOH . 
G 6 HOH A 119 1019 62 HOH HOH . 
G 6 HOH A 120 1020 63 HOH HOH . 
G 6 HOH A 121 1021 64 HOH HOH . 
G 6 HOH A 122 1022 65 HOH HOH . 
G 6 HOH A 123 1023 66 HOH HOH . 
G 6 HOH A 124 1024 67 HOH HOH . 
G 6 HOH A 125 1025 68 HOH HOH . 
G 6 HOH A 126 1026 69 HOH HOH . 
G 6 HOH A 127 1027 70 HOH HOH . 
G 6 HOH A 128 1028 72 HOH HOH . 
G 6 HOH A 129 1029 74 HOH HOH . 
G 6 HOH A 130 1030 75 HOH HOH . 
G 6 HOH A 131 1031 76 HOH HOH . 
G 6 HOH A 132 1032 77 HOH HOH . 
G 6 HOH A 133 1033 79 HOH HOH . 
G 6 HOH A 134 1034 81 HOH HOH . 
G 6 HOH A 135 1035 82 HOH HOH . 
G 6 HOH A 136 1036 83 HOH HOH . 
G 6 HOH A 137 1037 89 HOH HOH . 
G 6 HOH A 138 1038 90 HOH HOH . 
G 6 HOH A 139 1039 91 HOH HOH . 
G 6 HOH A 140 1040 92 HOH HOH . 
G 6 HOH A 141 1041 93 HOH HOH . 
G 6 HOH A 142 1042 94 HOH HOH . 
G 6 HOH A 143 1043 95 HOH HOH . 
G 6 HOH A 144 1044 98 HOH HOH . 
G 6 HOH A 145 1045 100 HOH HOH . 
G 6 HOH A 146 1046 101 HOH HOH . 
G 6 HOH A 147 1047 102 HOH HOH . 
G 6 HOH A 148 1048 103 HOH HOH . 
G 6 HOH A 149 1049 104 HOH HOH . 
G 6 HOH A 150 1050 106 HOH HOH . 
G 6 HOH A 151 1051 108 HOH HOH . 
G 6 HOH A 152 1052 110 HOH HOH . 
G 6 HOH A 153 1053 111 HOH HOH . 
G 6 HOH A 154 1054 113 HOH HOH . 
G 6 HOH A 155 1055 114 HOH HOH . 
G 6 HOH A 156 1056 115 HOH HOH . 
G 6 HOH A 157 1057 116 HOH HOH . 
G 6 HOH A 158 1058 122 HOH HOH . 
G 6 HOH A 159 1059 123 HOH HOH . 
G 6 HOH A 160 1060 125 HOH HOH . 
G 6 HOH A 161 1061 128 HOH HOH . 
G 6 HOH A 162 1062 129 HOH HOH . 
G 6 HOH A 163 1063 131 HOH HOH . 
G 6 HOH A 164 1064 132 HOH HOH . 
G 6 HOH A 165 1065 133 HOH HOH . 
G 6 HOH A 166 1066 137 HOH HOH . 
G 6 HOH A 167 1067 138 HOH HOH . 
G 6 HOH A 168 1068 139 HOH HOH . 
G 6 HOH A 169 1069 142 HOH HOH . 
G 6 HOH A 170 1070 143 HOH HOH . 
G 6 HOH A 171 1071 145 HOH HOH . 
G 6 HOH A 172 1072 148 HOH HOH . 
G 6 HOH A 173 1073 150 HOH HOH . 
G 6 HOH A 174 1074 151 HOH HOH . 
G 6 HOH A 175 1075 154 HOH HOH . 
G 6 HOH A 176 1076 155 HOH HOH . 
G 6 HOH A 177 1077 156 HOH HOH . 
G 6 HOH A 178 1078 157 HOH HOH . 
G 6 HOH A 179 1079 159 HOH HOH . 
G 6 HOH A 180 1080 160 HOH HOH . 
G 6 HOH A 181 1081 161 HOH HOH . 
G 6 HOH A 182 1082 162 HOH HOH . 
G 6 HOH A 183 1083 163 HOH HOH . 
G 6 HOH A 184 1084 165 HOH HOH . 
G 6 HOH A 185 1085 166 HOH HOH . 
G 6 HOH A 186 1086 167 HOH HOH . 
G 6 HOH A 187 1087 168 HOH HOH . 
G 6 HOH A 188 1088 170 HOH HOH . 
G 6 HOH A 189 1089 171 HOH HOH . 
G 6 HOH A 190 1090 174 HOH HOH . 
G 6 HOH A 191 1091 175 HOH HOH . 
G 6 HOH A 192 1092 178 HOH HOH . 
G 6 HOH A 193 1093 179 HOH HOH . 
G 6 HOH A 194 1094 180 HOH HOH . 
G 6 HOH A 195 1095 182 HOH HOH . 
G 6 HOH A 196 1096 184 HOH HOH . 
G 6 HOH A 197 1097 185 HOH HOH . 
G 6 HOH A 198 1098 187 HOH HOH . 
G 6 HOH A 199 1099 188 HOH HOH . 
G 6 HOH A 200 1100 189 HOH HOH . 
G 6 HOH A 201 1101 190 HOH HOH . 
G 6 HOH A 202 1102 193 HOH HOH . 
G 6 HOH A 203 1103 194 HOH HOH . 
G 6 HOH A 204 1104 196 HOH HOH . 
G 6 HOH A 205 1105 198 HOH HOH . 
G 6 HOH A 206 1106 199 HOH HOH . 
G 6 HOH A 207 1107 200 HOH HOH . 
G 6 HOH A 208 1108 201 HOH HOH . 
G 6 HOH A 209 1109 203 HOH HOH . 
G 6 HOH A 210 1110 204 HOH HOH . 
G 6 HOH A 211 1111 206 HOH HOH . 
G 6 HOH A 212 1112 208 HOH HOH . 
G 6 HOH A 213 1113 210 HOH HOH . 
G 6 HOH A 214 1114 212 HOH HOH . 
G 6 HOH A 215 1115 213 HOH HOH . 
G 6 HOH A 216 1116 214 HOH HOH . 
G 6 HOH A 217 1117 215 HOH HOH . 
G 6 HOH A 218 1118 216 HOH HOH . 
G 6 HOH A 219 1119 217 HOH HOH . 
G 6 HOH A 220 1120 220 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 5 -10.126 45.658 4.081 1 32.44 ? C1 EDO 805 A 1 
HETATM 2 O O1 EDO . . . F 5 -9.435 44.583 3.442 1 31.09 ? O1 EDO 805 A 1 
HETATM 3 C C2 EDO . . . F 5 -9.085 46.64 4.586 1 32.96 ? C2 EDO 805 A 1 
HETATM 4 O O2 EDO . . . F 5 -8.045 45.878 5.195 1 25.41 ? O2 EDO 805 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#