data_4PL3 # _model_server_result.job_id D_QAyXKt1ZWVo2wTQhog-w _model_server_result.datetime_utc '2024-11-22 05:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 4PL3 # _exptl.entry_id 4PL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.353 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-hydroxy-6-methoxy-3-[2-(2-methoxyethoxy)ethyl]-4,8-dimethyl-2H-chromen-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.88 _cell.angle_gamma 90 _cell.entry_id 4PL3 _cell.length_a 246.08 _cell.length_b 90.5 _cell.length_c 72.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 365 A LYS 907 1_555 C C19 31J . A 31J 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? covale ? covale2 B NZ LYS 365 B LYS 907 1_555 F C19 31J . B 31J 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? metalc ? metalc1 A OD1 ASP 169 A ASP 711 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc2 A OD2 ASP 169 A ASP 711 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 D O1A ADP . A ADP 1002 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc4 D O3A ADP . A ADP 1002 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc5 B O HIS 150 B HIS 692 1_555 H MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc6 B OD1 ASN 151 B ASN 693 1_555 H MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 B OD2 ASP 169 B ASP 711 1_555 H MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc8 G O1B ADP . B ADP 1002 1_555 H MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc9 G O2A ADP . B ADP 1002 1_555 H MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? # _chem_comp.formula 'C17 H22 O6' _chem_comp.formula_weight 322.353 _chem_comp.id 31J _chem_comp.mon_nstd_flag . _chem_comp.name 7-hydroxy-6-methoxy-3-[2-(2-methoxyethoxy)ethyl]-4,8-dimethyl-2H-chromen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C04 31J sing 1 n n C03 O02 31J sing 2 n n C04 O05 31J sing 3 n n C01 O02 31J sing 4 n n C06 O05 31J sing 5 n n C06 C07 31J sing 6 n n C07 C08 31J sing 7 n n O24 C23 31J doub 8 n n C08 C23 31J sing 9 n n C08 C09 31J doub 10 n n C23 O22 31J sing 11 n n C10 C09 31J sing 12 n n C09 C11 31J sing 13 n n O22 C21 31J sing 14 n n C11 C21 31J doub 15 n y C11 C12 31J sing 16 n y C21 C18 31J sing 17 n y C12 C13 31J doub 18 n y C18 C19 31J sing 19 n n C18 C16 31J doub 20 n y C13 C16 31J sing 21 n y C13 O14 31J sing 22 n n C16 O17 31J sing 23 n n C15 O14 31J sing 24 n n C01 H1 31J sing 25 n n C01 H2 31J sing 26 n n C01 H3 31J sing 27 n n C03 H4 31J sing 28 n n C03 H5 31J sing 29 n n C04 H6 31J sing 30 n n C04 H7 31J sing 31 n n C06 H8 31J sing 32 n n C06 H9 31J sing 33 n n C07 H10 31J sing 34 n n C07 H11 31J sing 35 n n C10 H12 31J sing 36 n n C10 H13 31J sing 37 n n C10 H14 31J sing 38 n n C12 H15 31J sing 39 n n C15 H16 31J sing 40 n n C15 H17 31J sing 41 n n C15 H18 31J sing 42 n n O17 H19 31J sing 43 n n C19 H20 31J sing 44 n n C19 H21 31J sing 45 n n C19 H22 31J sing 46 n n # _atom_sites.entry_id 4PL3 _atom_sites.fract_transf_matrix[1][1] 0.004064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 31J A 1 1001 401 31J 31J . D 3 ADP A 1 1002 1 ADP ADP . E 4 MG A 1 1003 1 MG MG . F 2 31J B 1 1001 401 31J 31J . G 3 ADP B 1 1002 1 ADP ADP . H 4 MG B 1 1003 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 31J . . . C 2 62.729 43.122 1.337 1 81.66 ? C21 31J 1001 A 1 HETATM 2 C C23 31J . . . C 2 61.845 42.515 -0.811 1 81.74 ? C23 31J 1001 A 1 HETATM 3 C C01 31J . . . C 2 67.843 45.645 -3.879 1 79.26 ? C01 31J 1001 A 1 HETATM 4 O O02 31J . . . C 2 66.506 45.37 -3.465 1 67.32 ? O02 31J 1001 A 1 HETATM 5 C C03 31J . . . C 2 65.531 45.573 -4.484 1 13.84 ? C03 31J 1001 A 1 HETATM 6 C C04 31J . . . C 2 64.39 44.585 -4.316 1 44.76 ? C04 31J 1001 A 1 HETATM 7 O O05 31J . . . C 2 63.281 45.111 -3.583 1 82.65 ? O05 31J 1001 A 1 HETATM 8 C C06 31J . . . C 2 62.203 44.162 -3.613 1 89.87 ? C06 31J 1001 A 1 HETATM 9 C C07 31J . . . C 2 61.134 44.371 -2.536 1 83.11 ? C07 31J 1001 A 1 HETATM 10 C C08 31J . . . C 2 61.673 43.937 -1.195 1 78.33 ? C08 31J 1001 A 1 HETATM 11 C C09 31J . . . C 2 62.077 44.959 -0.219 1 69.62 ? C09 31J 1001 A 1 HETATM 12 C C10 31J . . . C 2 61.944 46.422 -0.544 1 69.46 ? C10 31J 1001 A 1 HETATM 13 C C11 31J . . . C 2 62.615 44.489 1.079 1 80.29 ? C11 31J 1001 A 1 HETATM 14 C C12 31J . . . C 2 62.999 45.426 2.025 1 78.71 ? C12 31J 1001 A 1 HETATM 15 C C13 31J . . . C 2 63.505 45.002 3.245 1 78.81 ? C13 31J 1001 A 1 HETATM 16 O O14 31J . . . C 2 63.875 45.958 4.164 1 91.11 ? O14 31J 1001 A 1 HETATM 17 C C15 31J . . . C 2 63.436 47.311 3.99 1 81.41 ? C15 31J 1001 A 1 HETATM 18 C C16 31J . . . C 2 63.627 43.639 3.506 1 65.3 ? C16 31J 1001 A 1 HETATM 19 O O17 31J . . . C 2 64.117 43.172 4.689 1 55.97 ? O17 31J 1001 A 1 HETATM 20 C C18 31J . . . C 2 63.241 42.71 2.562 1 63.99 ? C18 31J 1001 A 1 HETATM 21 C C19 31J . . . C 2 63.382 41.278 2.917 1 43.02 ? C19 31J 1001 A 1 HETATM 22 O O22 31J . . . C 2 62.354 42.176 0.414 1 80.93 ? O22 31J 1001 A 1 HETATM 23 O O24 31J . . . C 2 61.518 41.621 -1.606 1 81.91 ? O24 31J 1001 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #