data_4PL9
#
_model_server_result.job_id            IOtwVY0Jci9PtnQuJ5KqUQ 
_model_server_result.datetime_utc      '2025-02-27 21:22:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    4PL9 
#
_exptl.entry_id    4PL9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PL9 
_cell.length_a            76.26 
_cell.length_b            83.12 
_cell.length_c            91.93 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 7 A GLU 413 1_555 G CD CD . A CD 606 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc2 A OE2 GLU 7 A GLU 413 1_555 G CD CD . A CD 606 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc3 A ND1 HIS 14 A HIS 420 1_555 F CD CD . A CD 605 7_455 ? ? ? ? L ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc4 A OE1 GLU 19 A GLU 425 1_555 G CD CD . A CD 606 6_545 ? ? ? ? L ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc5 A OE2 GLU 19 A GLU 425 1_555 G CD CD . A CD 606 6_545 ? ? ? ? L ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc6 A OE1 GLU 45 A GLU 451 1_555 F CD CD . A CD 605 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc7 A OE2 GLU 45 A GLU 451 1_555 F CD CD . A CD 605 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc8 A OE1 GLU 51 A GLU 457 1_555 I CD CD . A CD 608 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc9 A OE2 GLU 51 A GLU 457 1_555 I CD CD . A CD 608 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc10 A NZ LYS 52 A LYS 458 1_555 G CD CD . A CD 606 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc11 A OD1 ASN 64 A ASN 470 1_555 B CD CD . A CD 601 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc12 A ND1 HIS 98 A HIS 504 1_555 J CD CD . A CD 609 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc13 A NE2 HIS 98 A HIS 504 1_555 K CD CD . A CD 610 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc14 A OD1 ASP 107 A ASP 513 1_555 D CD CD . A CD 603 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc15 A OD2 ASP 107 A ASP 513 1_555 D CD CD . A CD 603 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc16 A OE1 GLU 153 A GLU 559 1_555 H CD CD . A CD 607 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc17 A OE2 GLU 153 A GLU 559 1_555 H CD CD . A CD 607 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc18 A OE1 GLU 159 A GLU 565 1_555 E CD CD . A CD 604 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc19 A OE2 GLU 159 A GLU 565 1_555 E CD CD . A CD 604 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc20 A OE1 GLU 159 A GLU 565 1_555 E CD CD . A CD 604 8_555 ? ? ? ? L ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc21 A OE2 GLU 159 A GLU 565 1_555 E CD CD . A CD 604 8_555 ? ? ? ? L ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc22 A OD1 ASP 161 A ASP 567 1_555 L CD CD . A CD 611 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc23 A OD2 ASP 161 A ASP 567 1_555 L CD CD . A CD 611 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc24 A SG CYS 167 A CYS 573 1_555 D CD CD . A CD 603 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc25 B CD CD . A CD 601 1_555 N O2B ADP . A ADP 613 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc26 B CD CD . A CD 601 1_555 N O1A ADP . A ADP 613 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc27 B CD CD . A CD 601 1_555 P O HOH . A HOH 723 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc28 B CD CD . A CD 601 1_555 P O HOH . A HOH 726 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc29 C CD CD . A CD 602 1_555 N O1B ADP . A ADP 613 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc30 C CD CD . A CD 602 1_555 P O HOH . A HOH 723 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc31 C CD CD . A CD 602 1_555 P O HOH . A HOH 726 6_545 ? L ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc32 D CD CD . A CD 603 1_555 N N1 ADP . A ADP 613 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc33 E CD CD . A CD 604 1_555 P O HOH . A HOH 728 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc34 E CD CD . A CD 604 1_555 P O HOH . A HOH 728 8_555 ? L ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc35 E CD CD . A CD 604 1_555 P O HOH . A HOH 729 8_555 ? L ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc36 F CD CD . A CD 605 1_555 P O HOH . A HOH 701 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc37 F CD CD . A CD 605 1_555 P O HOH . A HOH 702 7_455 ? L ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc38 F CD CD . A CD 605 1_555 P O HOH . A HOH 709 7_455 ? L ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc39 J CD CD . A CD 609 1_555 P O HOH . A HOH 792 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc40 K CD CD . A CD 610 1_555 P O HOH . A HOH 757 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc41 K CD CD . A CD 610 1_555 P O HOH . A HOH 799 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc42 L CD CD . A CD 611 1_555 P O HOH . A HOH 730 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.547 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4PL9 
_atom_sites.fract_transf_matrix[1][1]    0.013113 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012031 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010878 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 601 1 CD CD . 
C 2 CD A 1 602 2 CD CD . 
D 2 CD A 1 603 3 CD CD . 
E 2 CD A 1 604 4 CD CD . 
F 2 CD A 1 605 5 CD CD . 
G 2 CD A 1 606 6 CD CD . 
H 2 CD A 1 607 7 CD CD . 
I 2 CD A 1 608 8 CD CD . 
J 2 CD A 1 609 9 CD CD . 
K 2 CD A 1 610 10 CD CD . 
L 2 CD A 1 611 11 CD CD . 
M 3 CL A 1 612 1 CL CL . 
N 4 ADP A 1 613 1 ADP ADP . 
O 5 ACT A 1 614 1 ACT ACT . 
P 6 HOH A 1 701 85 HOH HOH . 
P 6 HOH A 2 702 70 HOH HOH . 
P 6 HOH A 3 703 5 HOH HOH . 
P 6 HOH A 4 704 21 HOH HOH . 
P 6 HOH A 5 705 61 HOH HOH . 
P 6 HOH A 6 706 9 HOH HOH . 
P 6 HOH A 7 707 51 HOH HOH . 
P 6 HOH A 8 708 8 HOH HOH . 
P 6 HOH A 9 709 56 HOH HOH . 
P 6 HOH A 10 710 37 HOH HOH . 
P 6 HOH A 11 711 28 HOH HOH . 
P 6 HOH A 12 712 27 HOH HOH . 
P 6 HOH A 13 713 30 HOH HOH . 
P 6 HOH A 14 714 93 HOH HOH . 
P 6 HOH A 15 715 18 HOH HOH . 
P 6 HOH A 16 716 59 HOH HOH . 
P 6 HOH A 17 717 65 HOH HOH . 
P 6 HOH A 18 718 52 HOH HOH . 
P 6 HOH A 19 719 39 HOH HOH . 
P 6 HOH A 20 720 1 HOH HOH . 
P 6 HOH A 21 721 63 HOH HOH . 
P 6 HOH A 22 722 11 HOH HOH . 
P 6 HOH A 23 723 57 HOH HOH . 
P 6 HOH A 24 724 25 HOH HOH . 
P 6 HOH A 25 725 74 HOH HOH . 
P 6 HOH A 26 726 80 HOH HOH . 
P 6 HOH A 27 727 88 HOH HOH . 
P 6 HOH A 28 728 75 HOH HOH . 
P 6 HOH A 29 729 55 HOH HOH . 
P 6 HOH A 30 730 82 HOH HOH . 
P 6 HOH A 31 731 87 HOH HOH . 
P 6 HOH A 32 732 49 HOH HOH . 
P 6 HOH A 33 733 81 HOH HOH . 
P 6 HOH A 34 734 58 HOH HOH . 
P 6 HOH A 35 735 97 HOH HOH . 
P 6 HOH A 36 736 2 HOH HOH . 
P 6 HOH A 37 737 3 HOH HOH . 
P 6 HOH A 38 738 4 HOH HOH . 
P 6 HOH A 39 739 6 HOH HOH . 
P 6 HOH A 40 740 7 HOH HOH . 
P 6 HOH A 41 741 10 HOH HOH . 
P 6 HOH A 42 742 12 HOH HOH . 
P 6 HOH A 43 743 13 HOH HOH . 
P 6 HOH A 44 744 14 HOH HOH . 
P 6 HOH A 45 745 15 HOH HOH . 
P 6 HOH A 46 746 16 HOH HOH . 
P 6 HOH A 47 747 17 HOH HOH . 
P 6 HOH A 48 748 19 HOH HOH . 
P 6 HOH A 49 749 20 HOH HOH . 
P 6 HOH A 50 750 22 HOH HOH . 
P 6 HOH A 51 751 23 HOH HOH . 
P 6 HOH A 52 752 24 HOH HOH . 
P 6 HOH A 53 753 26 HOH HOH . 
P 6 HOH A 54 754 29 HOH HOH . 
P 6 HOH A 55 755 31 HOH HOH . 
P 6 HOH A 56 756 32 HOH HOH . 
P 6 HOH A 57 757 33 HOH HOH . 
P 6 HOH A 58 758 34 HOH HOH . 
P 6 HOH A 59 759 35 HOH HOH . 
P 6 HOH A 60 760 36 HOH HOH . 
P 6 HOH A 61 761 38 HOH HOH . 
P 6 HOH A 62 762 40 HOH HOH . 
P 6 HOH A 63 763 41 HOH HOH . 
P 6 HOH A 64 764 42 HOH HOH . 
P 6 HOH A 65 765 43 HOH HOH . 
P 6 HOH A 66 766 44 HOH HOH . 
P 6 HOH A 67 767 45 HOH HOH . 
P 6 HOH A 68 768 46 HOH HOH . 
P 6 HOH A 69 769 47 HOH HOH . 
P 6 HOH A 70 770 48 HOH HOH . 
P 6 HOH A 71 771 50 HOH HOH . 
P 6 HOH A 72 772 53 HOH HOH . 
P 6 HOH A 73 773 54 HOH HOH . 
P 6 HOH A 74 774 60 HOH HOH . 
P 6 HOH A 75 775 62 HOH HOH . 
P 6 HOH A 76 776 64 HOH HOH . 
P 6 HOH A 77 777 66 HOH HOH . 
P 6 HOH A 78 778 67 HOH HOH . 
P 6 HOH A 79 779 68 HOH HOH . 
P 6 HOH A 80 780 69 HOH HOH . 
P 6 HOH A 81 781 71 HOH HOH . 
P 6 HOH A 82 782 72 HOH HOH . 
P 6 HOH A 83 783 73 HOH HOH . 
P 6 HOH A 84 784 76 HOH HOH . 
P 6 HOH A 85 785 77 HOH HOH . 
P 6 HOH A 86 786 78 HOH HOH . 
P 6 HOH A 87 787 79 HOH HOH . 
P 6 HOH A 88 788 83 HOH HOH . 
P 6 HOH A 89 789 84 HOH HOH . 
P 6 HOH A 90 790 86 HOH HOH . 
P 6 HOH A 91 791 89 HOH HOH . 
P 6 HOH A 92 792 90 HOH HOH . 
P 6 HOH A 93 793 91 HOH HOH . 
P 6 HOH A 94 794 92 HOH HOH . 
P 6 HOH A 95 795 94 HOH HOH . 
P 6 HOH A 96 796 95 HOH HOH . 
P 6 HOH A 97 797 96 HOH HOH . 
P 6 HOH A 98 798 98 HOH HOH . 
P 6 HOH A 99 799 99 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          L 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               0.953 
_atom_site.Cartn_y               -20.168 
_atom_site.Cartn_z               24.463 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        49.49 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           39 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           1201 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#