data_4PLA # _model_server_result.job_id 7mb2OgjMAx_fSTcdToZ5oQ _model_server_result.datetime_utc '2024-10-12 15:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4PLA # _exptl.entry_id 4PLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PLA _cell.length_a 104.744 _cell.length_b 79.539 _cell.length_c 78.704 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4PLA _atom_sites.fract_transf_matrix[1][1] 0.009547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1201 1 ATP ATP . C 2 ATP A 1 1202 2 ATP ATP . D 3 HOH A 1 1301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 122.78 49.861 -6.3 1 112.61 ? PG ATP 1201 A 1 HETATM 2 O O1G ATP . . . B 2 121.399 49.301 -6.296 1 101.03 ? O1G ATP 1201 A 1 HETATM 3 O O2G ATP . . . B 2 123.751 49.001 -5.578 1 94.91 ? O2G ATP 1201 A 1 HETATM 4 O O3G ATP . . . B 2 122.831 51.289 -5.848 1 116.83 ? O3G ATP 1201 A 1 HETATM 5 P PB ATP . . . B 2 123.734 51.122 -8.47 1 123.63 ? PB ATP 1201 A 1 HETATM 6 O O1B ATP . . . B 2 122.495 51.941 -8.631 1 110.49 ? O1B ATP 1201 A 1 HETATM 7 O O2B ATP . . . B 2 124.79 51.601 -7.523 1 113.61 ? O2B ATP 1201 A 1 HETATM 8 O O3B ATP . . . B 2 123.245 49.765 -7.829 1 97.97 ? O3B ATP 1201 A 1 HETATM 9 P PA ATP . . . B 2 124.685 49.328 -10.287 1 105.98 ? PA ATP 1201 A 1 HETATM 10 O O1A ATP . . . B 2 125.159 48.62 -9.069 1 95.2 ? O1A ATP 1201 A 1 HETATM 11 O O2A ATP . . . B 2 125.388 49.241 -11.598 1 83.37 ? O2A ATP 1201 A 1 HETATM 12 O O3A ATP . . . B 2 124.402 50.825 -9.882 1 111.33 ? O3A ATP 1201 A 1 HETATM 13 O O5' ATP . . . B 2 123.202 48.862 -10.484 1 93.6 ? O5' ATP 1201 A 1 HETATM 14 C C5' ATP . . . B 2 122.944 48.087 -11.616 1 70.55 ? C5' ATP 1201 A 1 HETATM 15 C C4' ATP . . . B 2 121.865 47.087 -11.296 1 69.02 ? C4' ATP 1201 A 1 HETATM 16 O O4' ATP . . . B 2 122.226 45.936 -12.024 1 75.41 ? O4' ATP 1201 A 1 HETATM 17 C C3' ATP . . . B 2 121.741 46.68 -9.84 1 75.93 ? C3' ATP 1201 A 1 HETATM 18 O O3' ATP . . . B 2 120.501 47.057 -9.264 1 76.8 ? O3' ATP 1201 A 1 HETATM 19 C C2' ATP . . . B 2 121.773 45.187 -9.851 1 66.93 ? C2' ATP 1201 A 1 HETATM 20 O O2' ATP . . . B 2 120.443 44.735 -9.663 1 65.98 ? O2' ATP 1201 A 1 HETATM 21 C C1' ATP . . . B 2 122.22 44.776 -11.22 1 65.46 ? C1' ATP 1201 A 1 HETATM 22 N N9 ATP . . . B 2 123.558 44.171 -11.287 1 62.99 ? N9 ATP 1201 A 1 HETATM 23 C C8 ATP . . . B 2 124.688 44.768 -11.652 1 65.97 ? C8 ATP 1201 A 1 HETATM 24 N N7 ATP . . . B 2 125.717 43.911 -11.636 1 56.24 ? N7 ATP 1201 A 1 HETATM 25 C C5 ATP . . . B 2 125.225 42.74 -11.273 1 59.39 ? C5 ATP 1201 A 1 HETATM 26 C C6 ATP . . . B 2 125.757 41.415 -11.06 1 58.81 ? C6 ATP 1201 A 1 HETATM 27 N N6 ATP . . . B 2 127.064 41.19 -11.246 1 60.9 ? N6 ATP 1201 A 1 HETATM 28 N N1 ATP . . . B 2 124.914 40.457 -10.674 1 57.91 ? N1 ATP 1201 A 1 HETATM 29 C C2 ATP . . . B 2 123.621 40.681 -10.487 1 58.03 ? C2 ATP 1201 A 1 HETATM 30 N N3 ATP . . . B 2 123.069 41.872 -10.661 1 63.59 ? N3 ATP 1201 A 1 HETATM 31 C C4 ATP . . . B 2 123.809 42.913 -11.043 1 64.09 ? C4 ATP 1201 A 1 HETATM 32 H "H5'1" ATP . . . B 2 123.853 47.565 -11.924 1 84.66 ? "H5'1" ATP 1201 A 1 HETATM 33 H "H5'2" ATP . . . B 2 122.622 48.728 -12.439 1 84.66 ? "H5'2" ATP 1201 A 1 HETATM 34 H H4' ATP . . . B 2 120.898 47.473 -11.648 1 82.83 ? H4' ATP 1201 A 1 HETATM 35 H H3' ATP . . . B 2 122.59 47.072 -9.261 1 91.12 ? H3' ATP 1201 A 1 HETATM 36 H HO3' ATP . . . B 2 120.475 46.775 -8.34 1 92.17 ? HO3' ATP 1201 A 1 HETATM 37 H H2' ATP . . . B 2 122.455 44.802 -9.081 1 80.32 ? H2' ATP 1201 A 1 HETATM 38 H HO2' ATP . . . B 2 120.117 45.042 -8.805 1 79.18 ? HO2' ATP 1201 A 1 HETATM 39 H H1' ATP . . . B 2 121.484 44.064 -11.619 1 78.55 ? H1' ATP 1201 A 1 HETATM 40 H H8 ATP . . . B 2 124.768 45.816 -11.916 1 79.17 ? H8 ATP 1201 A 1 HETATM 41 H HN61 ATP . . . B 2 127.444 40.267 -11.094 1 73.08 ? HN61 ATP 1201 A 1 HETATM 42 H HN62 ATP . . . B 2 127.67 41.945 -11.534 1 73.08 ? HN62 ATP 1201 A 1 HETATM 43 H H2 ATP . . . B 2 122.991 39.857 -10.175 1 69.64 ? H2 ATP 1201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #