data_4PLO
#
_model_server_result.job_id            qZZdPRbJ-gEbVqyHcGsE5w 
_model_server_result.datetime_utc      '2024-11-09 02:03:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4plo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    4PLO 
#
_exptl.entry_id    4PLO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PLO 
_cell.length_a            49.478 
_cell.length_b            72.939 
_cell.length_c            285.159 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PLO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_645 x+1,y-1,z 1 0 0 0 1 0 0 0 1 49.478 -72.939 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 18 A CYS 43 1_555 B SG CYS 28 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
disulf ? disulf2 B SG CYS 47 A CYS 72 1_555 B SG CYS 71 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 B SG CYS 55 A CYS 80 1_555 B SG CYS 68 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 B SG CYS 96 A CYS 121 1_555 B SG CYS 129 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf5 B SG CYS 158 A CYS 183 1_555 B SG CYS 180 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf6 B SG CYS 262 A CYS 287 1_555 B SG CYS 271 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf7 B SG CYS 264 A CYS 289 1_555 B SG CYS 281 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 B SG CYS 283 A CYS 308 1_555 B SG CYS 292 A CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf9 B SG CYS 295 A CYS 320 1_555 B SG CYS 315 A CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf10 B SG CYS 318 A CYS 343 1_555 B SG CYS 327 A CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf11 B SG CYS 320 A CYS 345 1_555 B SG CYS 345 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 B SG CYS 348 A CYS 373 1_555 B SG CYS 357 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf13 B SG CYS 360 A CYS 385 1_555 B SG CYS 378 A CYS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf14 B SG CYS 381 A CYS 406 1_555 B SG CYS 393 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf15 B SG CYS 383 A CYS 408 1_555 B SG CYS 400 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 B SG CYS 402 A CYS 427 1_555 B SG CYS 411 A CYS 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf17 B SG CYS 414 A CYS 439 1_555 B SG CYS 428 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 B ND2 ASN 72 A ASN 97 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 B ND2 ASN 93 A ASN 118 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? 
covale ? covale3 B ND2 ASN 108 A ASN 133 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
metalc ? metalc1 B O PHE 84 A PHE 109 1_555 K CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc2 B OD1 ASP 87 A ASP 112 1_555 K CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc3 B O THR 95 A THR 120 1_555 K CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc4 B OG1 THR 95 A THR 120 1_555 K CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc5 B O SER 254 A SER 279 1_555 K CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc6 K CA CA . A CA 509 1_555 M O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc7 K CA CA . A CA 509 1_555 M O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4PLO 
_atom_sites.fract_transf_matrix[1][1]    0.020211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01371 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 501 971 NAG NAG . 
D 3 NAG A 1 502 1181 NAG NAG . 
E 3 NAG A 1 503 1331 NAG NAG . 
F 4 SO4 A 1 504 1 SO4 SO4 . 
G 4 SO4 A 1 505 2 SO4 SO4 . 
H 4 SO4 A 1 506 3 SO4 SO4 . 
I 4 SO4 A 1 507 4 SO4 SO4 . 
J 4 SO4 A 1 508 5 SO4 SO4 . 
K 5 CA A 1 509 1 CA CA . 
L 6 HOH B 1 1001 66 HOH HOH . 
L 6 HOH B 2 1002 34 HOH HOH . 
L 6 HOH B 3 1003 16 HOH HOH . 
L 6 HOH B 4 1004 9 HOH HOH . 
L 6 HOH B 5 1005 15 HOH HOH . 
L 6 HOH B 6 1006 20 HOH HOH . 
L 6 HOH B 7 1007 30 HOH HOH . 
L 6 HOH B 8 1008 32 HOH HOH . 
L 6 HOH B 9 1009 38 HOH HOH . 
L 6 HOH B 10 1010 40 HOH HOH . 
L 6 HOH B 11 1011 46 HOH HOH . 
L 6 HOH B 12 1012 53 HOH HOH . 
L 6 HOH B 13 1013 62 HOH HOH . 
L 6 HOH B 14 1014 64 HOH HOH . 
L 6 HOH B 15 1015 65 HOH HOH . 
L 6 HOH B 16 1016 67 HOH HOH . 
M 6 HOH A 1 601 33 HOH HOH . 
M 6 HOH A 2 602 2 HOH HOH . 
M 6 HOH A 3 603 21 HOH HOH . 
M 6 HOH A 4 604 61 HOH HOH . 
M 6 HOH A 5 605 19 HOH HOH . 
M 6 HOH A 6 606 37 HOH HOH . 
M 6 HOH A 7 607 1 HOH HOH . 
M 6 HOH A 8 608 3 HOH HOH . 
M 6 HOH A 9 609 4 HOH HOH . 
M 6 HOH A 10 610 5 HOH HOH . 
M 6 HOH A 11 611 6 HOH HOH . 
M 6 HOH A 12 612 7 HOH HOH . 
M 6 HOH A 13 613 8 HOH HOH . 
M 6 HOH A 14 614 10 HOH HOH . 
M 6 HOH A 15 615 11 HOH HOH . 
M 6 HOH A 16 616 12 HOH HOH . 
M 6 HOH A 17 617 13 HOH HOH . 
M 6 HOH A 18 618 14 HOH HOH . 
M 6 HOH A 19 619 17 HOH HOH . 
M 6 HOH A 20 620 18 HOH HOH . 
M 6 HOH A 21 621 22 HOH HOH . 
M 6 HOH A 22 622 23 HOH HOH . 
M 6 HOH A 23 623 24 HOH HOH . 
M 6 HOH A 24 624 25 HOH HOH . 
M 6 HOH A 25 625 26 HOH HOH . 
M 6 HOH A 26 626 27 HOH HOH . 
M 6 HOH A 27 627 28 HOH HOH . 
M 6 HOH A 28 628 29 HOH HOH . 
M 6 HOH A 29 629 31 HOH HOH . 
M 6 HOH A 30 630 35 HOH HOH . 
M 6 HOH A 31 631 36 HOH HOH . 
M 6 HOH A 32 632 39 HOH HOH . 
M 6 HOH A 33 633 41 HOH HOH . 
M 6 HOH A 34 634 42 HOH HOH . 
M 6 HOH A 35 635 43 HOH HOH . 
M 6 HOH A 36 636 44 HOH HOH . 
M 6 HOH A 37 637 45 HOH HOH . 
M 6 HOH A 38 638 47 HOH HOH . 
M 6 HOH A 39 639 48 HOH HOH . 
M 6 HOH A 40 640 49 HOH HOH . 
M 6 HOH A 41 641 50 HOH HOH . 
M 6 HOH A 42 642 51 HOH HOH . 
M 6 HOH A 43 643 52 HOH HOH . 
M 6 HOH A 44 644 54 HOH HOH . 
M 6 HOH A 45 645 55 HOH HOH . 
M 6 HOH A 46 646 56 HOH HOH . 
M 6 HOH A 47 647 57 HOH HOH . 
M 6 HOH A 48 648 58 HOH HOH . 
M 6 HOH A 49 649 59 HOH HOH . 
M 6 HOH A 50 650 60 HOH HOH . 
M 6 HOH A 51 651 63 HOH HOH . 
M 6 HOH A 52 652 68 HOH HOH . 
M 6 HOH A 53 653 69 HOH HOH . 
M 6 HOH A 54 654 70 HOH HOH . 
M 6 HOH A 55 655 71 HOH HOH . 
M 6 HOH A 56 656 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 5.48 5.325 -73.38 1 52.1 ? C1 NAG 502 A 1 
HETATM 2 C C2 NAG . . . D 3 6.547 4.19 -73.406 1 52.74 ? C2 NAG 502 A 1 
HETATM 3 C C3 NAG . . . D 3 6.172 2.806 -73.861 1 44.11 ? C3 NAG 502 A 1 
HETATM 4 C C4 NAG . . . D 3 4.773 2.601 -74.401 1 48.87 ? C4 NAG 502 A 1 
HETATM 5 C C5 NAG . . . D 3 4.099 3.884 -74.83 1 48.63 ? C5 NAG 502 A 1 
HETATM 6 C C6 NAG . . . D 3 2.706 3.643 -75.402 1 62.47 ? C6 NAG 502 A 1 
HETATM 7 C C7 NAG . . . D 3 8.767 4.667 -73.722 1 39.22 ? C7 NAG 502 A 1 
HETATM 8 C C8 NAG . . . D 3 9.538 5.927 -73.897 1 44.72 ? C8 NAG 502 A 1 
HETATM 9 N N2 NAG . . . D 3 7.577 4.68 -74.234 1 46.38 ? N2 NAG 502 A 1 
HETATM 10 O O3 NAG . . . D 3 6.354 1.992 -72.724 1 41.17 ? O3 NAG 502 A 1 
HETATM 11 O O4 NAG . . . D 3 4.882 1.813 -75.585 1 55.17 ? O4 NAG 502 A 1 
HETATM 12 O O5 NAG . . . D 3 4.172 4.789 -73.727 1 47.64 ? O5 NAG 502 A 1 
HETATM 13 O O6 NAG . . . D 3 1.734 3.733 -74.406 1 70.27 ? O6 NAG 502 A 1 
HETATM 14 O O7 NAG . . . D 3 9.187 3.691 -73.149 1 32.59 ? O7 NAG 502 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#