data_4PMF
#
_model_server_result.job_id            1IIMh-l8bFxatJNYCZeNeQ 
_model_server_result.datetime_utc      '2024-11-22 09:21:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4PMF 
#
_exptl.entry_id    4PMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PMF 
_cell.length_a            43.255 
_cell.length_b            85.487 
_cell.length_c            64.168 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.255 85.487 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PHE 36 A PHE 44 1_555 D NA NA . A NA 202 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
metalc ? metalc2 A O ASP 91 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc3 D NA NA . A NA 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc4 D NA NA . A NA 202 1_555 G O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc5 D NA NA . A NA 202 1_555 G O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 D NA NA . A NA 202 1_555 G O HOH . A HOH 343 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc7 D NA NA . A NA 202 1_555 G O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4PMF 
_atom_sites.fract_transf_matrix[1][1]    0.023119 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011698 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CUR A 1 201 1 CUR CUR . 
D 3 NA A 1 202 1 NA NA . 
E 2 CUR B 1 201 1 CUR CUR . 
F 4 EDO B 1 202 4 EDO EDO . 
G 5 HOH A 1 301 149 HOH HOH . 
G 5 HOH A 2 302 184 HOH HOH . 
G 5 HOH A 3 303 210 HOH HOH . 
G 5 HOH A 4 304 30 HOH HOH . 
G 5 HOH A 5 305 27 HOH HOH . 
G 5 HOH A 6 306 137 HOH HOH . 
G 5 HOH A 7 307 123 HOH HOH . 
G 5 HOH A 8 308 118 HOH HOH . 
G 5 HOH A 9 309 220 HOH HOH . 
G 5 HOH A 10 310 138 HOH HOH . 
G 5 HOH A 11 311 40 HOH HOH . 
G 5 HOH A 12 312 42 HOH HOH . 
G 5 HOH A 13 313 24 HOH HOH . 
G 5 HOH A 14 314 18 HOH HOH . 
G 5 HOH A 15 315 180 HOH HOH . 
G 5 HOH A 16 316 37 HOH HOH . 
G 5 HOH A 17 317 151 HOH HOH . 
G 5 HOH A 18 318 134 HOH HOH . 
G 5 HOH A 19 319 113 HOH HOH . 
G 5 HOH A 20 320 213 HOH HOH . 
G 5 HOH A 21 321 13 HOH HOH . 
G 5 HOH A 22 322 21 HOH HOH . 
G 5 HOH A 23 323 39 HOH HOH . 
G 5 HOH A 24 324 111 HOH HOH . 
G 5 HOH A 25 325 12 HOH HOH . 
G 5 HOH A 26 326 89 HOH HOH . 
G 5 HOH A 27 327 139 HOH HOH . 
G 5 HOH A 28 328 110 HOH HOH . 
G 5 HOH A 29 329 122 HOH HOH . 
G 5 HOH A 30 330 32 HOH HOH . 
G 5 HOH A 31 331 163 HOH HOH . 
G 5 HOH A 32 332 88 HOH HOH . 
G 5 HOH A 33 333 22 HOH HOH . 
G 5 HOH A 34 334 112 HOH HOH . 
G 5 HOH A 35 335 6 HOH HOH . 
G 5 HOH A 36 336 34 HOH HOH . 
G 5 HOH A 37 337 121 HOH HOH . 
G 5 HOH A 38 338 41 HOH HOH . 
G 5 HOH A 39 339 193 HOH HOH . 
G 5 HOH A 40 340 145 HOH HOH . 
G 5 HOH A 41 341 144 HOH HOH . 
G 5 HOH A 42 342 107 HOH HOH . 
G 5 HOH A 43 343 160 HOH HOH . 
G 5 HOH A 44 344 211 HOH HOH . 
G 5 HOH A 45 345 133 HOH HOH . 
G 5 HOH A 46 346 162 HOH HOH . 
G 5 HOH A 47 347 206 HOH HOH . 
G 5 HOH A 48 348 212 HOH HOH . 
G 5 HOH A 49 349 177 HOH HOH . 
G 5 HOH A 50 350 179 HOH HOH . 
G 5 HOH A 51 351 208 HOH HOH . 
G 5 HOH A 52 352 136 HOH HOH . 
G 5 HOH A 53 353 120 HOH HOH . 
G 5 HOH A 54 354 150 HOH HOH . 
G 5 HOH A 55 355 147 HOH HOH . 
G 5 HOH A 56 356 23 HOH HOH . 
G 5 HOH A 57 357 106 HOH HOH . 
G 5 HOH A 58 358 75 HOH HOH . 
G 5 HOH A 59 359 129 HOH HOH . 
G 5 HOH A 60 360 159 HOH HOH . 
G 5 HOH A 61 361 170 HOH HOH . 
G 5 HOH A 62 362 165 HOH HOH . 
G 5 HOH A 63 363 185 HOH HOH . 
G 5 HOH A 64 364 161 HOH HOH . 
G 5 HOH A 65 365 201 HOH HOH . 
G 5 HOH A 66 366 156 HOH HOH . 
G 5 HOH A 67 367 167 HOH HOH . 
G 5 HOH A 68 368 207 HOH HOH . 
G 5 HOH A 69 369 93 HOH HOH . 
G 5 HOH A 70 370 98 HOH HOH . 
G 5 HOH A 71 371 1 HOH HOH . 
G 5 HOH A 72 372 2 HOH HOH . 
G 5 HOH A 73 373 3 HOH HOH . 
G 5 HOH A 74 374 4 HOH HOH . 
G 5 HOH A 75 375 5 HOH HOH . 
G 5 HOH A 76 376 7 HOH HOH . 
G 5 HOH A 77 377 8 HOH HOH . 
G 5 HOH A 78 378 9 HOH HOH . 
G 5 HOH A 79 379 10 HOH HOH . 
G 5 HOH A 80 380 11 HOH HOH . 
G 5 HOH A 81 381 14 HOH HOH . 
G 5 HOH A 82 382 15 HOH HOH . 
G 5 HOH A 83 383 16 HOH HOH . 
G 5 HOH A 84 384 17 HOH HOH . 
G 5 HOH A 85 385 19 HOH HOH . 
G 5 HOH A 86 386 20 HOH HOH . 
G 5 HOH A 87 387 25 HOH HOH . 
G 5 HOH A 88 388 26 HOH HOH . 
G 5 HOH A 89 389 28 HOH HOH . 
G 5 HOH A 90 390 29 HOH HOH . 
G 5 HOH A 91 391 31 HOH HOH . 
G 5 HOH A 92 392 33 HOH HOH . 
G 5 HOH A 93 393 35 HOH HOH . 
G 5 HOH A 94 394 36 HOH HOH . 
G 5 HOH A 95 395 38 HOH HOH . 
G 5 HOH A 96 396 43 HOH HOH . 
G 5 HOH A 97 397 44 HOH HOH . 
G 5 HOH A 98 398 45 HOH HOH . 
G 5 HOH A 99 399 46 HOH HOH . 
G 5 HOH A 100 400 47 HOH HOH . 
G 5 HOH A 101 401 48 HOH HOH . 
G 5 HOH A 102 402 87 HOH HOH . 
G 5 HOH A 103 403 97 HOH HOH . 
G 5 HOH A 104 404 99 HOH HOH . 
G 5 HOH A 105 405 103 HOH HOH . 
G 5 HOH A 106 406 109 HOH HOH . 
G 5 HOH A 107 407 114 HOH HOH . 
G 5 HOH A 108 408 116 HOH HOH . 
G 5 HOH A 109 409 119 HOH HOH . 
G 5 HOH A 110 410 127 HOH HOH . 
G 5 HOH A 111 411 128 HOH HOH . 
G 5 HOH A 112 412 130 HOH HOH . 
G 5 HOH A 113 413 135 HOH HOH . 
G 5 HOH A 114 414 140 HOH HOH . 
G 5 HOH A 115 415 141 HOH HOH . 
G 5 HOH A 116 416 143 HOH HOH . 
G 5 HOH A 117 417 153 HOH HOH . 
G 5 HOH A 118 418 171 HOH HOH . 
G 5 HOH A 119 419 173 HOH HOH . 
G 5 HOH A 120 420 174 HOH HOH . 
G 5 HOH A 121 421 178 HOH HOH . 
G 5 HOH A 122 422 181 HOH HOH . 
G 5 HOH A 123 423 186 HOH HOH . 
G 5 HOH A 124 424 187 HOH HOH . 
G 5 HOH A 125 425 188 HOH HOH . 
G 5 HOH A 126 426 191 HOH HOH . 
G 5 HOH A 127 427 196 HOH HOH . 
G 5 HOH A 128 428 198 HOH HOH . 
G 5 HOH A 129 429 200 HOH HOH . 
G 5 HOH A 130 430 202 HOH HOH . 
H 5 HOH B 1 301 148 HOH HOH . 
H 5 HOH B 2 302 115 HOH HOH . 
H 5 HOH B 3 303 221 HOH HOH . 
H 5 HOH B 4 304 79 HOH HOH . 
H 5 HOH B 5 305 209 HOH HOH . 
H 5 HOH B 6 306 83 HOH HOH . 
H 5 HOH B 7 307 100 HOH HOH . 
H 5 HOH B 8 308 59 HOH HOH . 
H 5 HOH B 9 309 108 HOH HOH . 
H 5 HOH B 10 310 66 HOH HOH . 
H 5 HOH B 11 311 96 HOH HOH . 
H 5 HOH B 12 312 71 HOH HOH . 
H 5 HOH B 13 313 126 HOH HOH . 
H 5 HOH B 14 314 164 HOH HOH . 
H 5 HOH B 15 315 58 HOH HOH . 
H 5 HOH B 16 316 82 HOH HOH . 
H 5 HOH B 17 317 215 HOH HOH . 
H 5 HOH B 18 318 182 HOH HOH . 
H 5 HOH B 19 319 86 HOH HOH . 
H 5 HOH B 20 320 183 HOH HOH . 
H 5 HOH B 21 321 92 HOH HOH . 
H 5 HOH B 22 322 74 HOH HOH . 
H 5 HOH B 23 323 56 HOH HOH . 
H 5 HOH B 24 324 77 HOH HOH . 
H 5 HOH B 25 325 68 HOH HOH . 
H 5 HOH B 26 326 78 HOH HOH . 
H 5 HOH B 27 327 104 HOH HOH . 
H 5 HOH B 28 328 131 HOH HOH . 
H 5 HOH B 29 329 70 HOH HOH . 
H 5 HOH B 30 330 204 HOH HOH . 
H 5 HOH B 31 331 190 HOH HOH . 
H 5 HOH B 32 332 142 HOH HOH . 
H 5 HOH B 33 333 216 HOH HOH . 
H 5 HOH B 34 334 101 HOH HOH . 
H 5 HOH B 35 335 132 HOH HOH . 
H 5 HOH B 36 336 199 HOH HOH . 
H 5 HOH B 37 337 217 HOH HOH . 
H 5 HOH B 38 338 76 HOH HOH . 
H 5 HOH B 39 339 67 HOH HOH . 
H 5 HOH B 40 340 219 HOH HOH . 
H 5 HOH B 41 341 49 HOH HOH . 
H 5 HOH B 42 342 50 HOH HOH . 
H 5 HOH B 43 343 51 HOH HOH . 
H 5 HOH B 44 344 52 HOH HOH . 
H 5 HOH B 45 345 53 HOH HOH . 
H 5 HOH B 46 346 54 HOH HOH . 
H 5 HOH B 47 347 55 HOH HOH . 
H 5 HOH B 48 348 57 HOH HOH . 
H 5 HOH B 49 349 60 HOH HOH . 
H 5 HOH B 50 350 61 HOH HOH . 
H 5 HOH B 51 351 62 HOH HOH . 
H 5 HOH B 52 352 63 HOH HOH . 
H 5 HOH B 53 353 64 HOH HOH . 
H 5 HOH B 54 354 65 HOH HOH . 
H 5 HOH B 55 355 69 HOH HOH . 
H 5 HOH B 56 356 72 HOH HOH . 
H 5 HOH B 57 357 73 HOH HOH . 
H 5 HOH B 58 358 80 HOH HOH . 
H 5 HOH B 59 359 81 HOH HOH . 
H 5 HOH B 60 360 84 HOH HOH . 
H 5 HOH B 61 361 85 HOH HOH . 
H 5 HOH B 62 362 90 HOH HOH . 
H 5 HOH B 63 363 91 HOH HOH . 
H 5 HOH B 64 364 94 HOH HOH . 
H 5 HOH B 65 365 95 HOH HOH . 
H 5 HOH B 66 366 102 HOH HOH . 
H 5 HOH B 67 367 105 HOH HOH . 
H 5 HOH B 68 368 117 HOH HOH . 
H 5 HOH B 69 369 124 HOH HOH . 
H 5 HOH B 70 370 146 HOH HOH . 
H 5 HOH B 71 371 152 HOH HOH . 
H 5 HOH B 72 372 154 HOH HOH . 
H 5 HOH B 73 373 155 HOH HOH . 
H 5 HOH B 74 374 157 HOH HOH . 
H 5 HOH B 75 375 158 HOH HOH . 
H 5 HOH B 76 376 166 HOH HOH . 
H 5 HOH B 77 377 168 HOH HOH . 
H 5 HOH B 78 378 169 HOH HOH . 
H 5 HOH B 79 379 172 HOH HOH . 
H 5 HOH B 80 380 175 HOH HOH . 
H 5 HOH B 81 381 176 HOH HOH . 
H 5 HOH B 82 382 189 HOH HOH . 
H 5 HOH B 83 383 192 HOH HOH . 
H 5 HOH B 84 384 194 HOH HOH . 
H 5 HOH B 85 385 195 HOH HOH . 
H 5 HOH B 86 386 197 HOH HOH . 
H 5 HOH B 87 387 203 HOH HOH . 
H 5 HOH B 88 388 205 HOH HOH . 
H 5 HOH B 89 389 214 HOH HOH . 
H 5 HOH B 90 390 218 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -0.515 
_atom_site.Cartn_y               25.466 
_atom_site.Cartn_z               33.911 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.21 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#