data_4PMJ
#
_model_server_result.job_id            CnfB0efA98DeNb4UxoyhmA 
_model_server_result.datetime_utc      '2024-11-14 01:44:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pmj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4PMJ 
#
_exptl.entry_id    4PMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PMJ 
_cell.length_a            44.324 
_cell.length_b            78.897 
_cell.length_c            79.563 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PMJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N HIS 2 A HIS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C ARG 25 A ARG 25 1_555 A N MSE 26 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 A C MSE 26 A MSE 26 1_555 A N GLY 27 A GLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C GLY 47 A GLY 47 1_555 A N MSE 48 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 A C MSE 48 A MSE 48 1_555 A N THR 49 A THR 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C GLU 55 A GLU 55 1_555 A N MSE 56 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale7 A C MSE 56 A MSE 56 1_555 A N TYR 57 A TYR 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C ASP 150 A ASP 150 1_555 A N MSE 151 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale9 A C MSE 151 A MSE 151 1_555 A N GLU 152 A GLU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C VAL 192 A VAL 192 1_555 A N MSE 193 A MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale11 A C MSE 193 A MSE 193 1_555 A N ALA 194 A ALA 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale12 A C ALA 252 A ALA 252 1_555 A N MSE 253 A MSE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale13 A C MSE 253 A MSE 253 1_555 A N ASP 254 A ASP 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4PMJ 
_atom_sites.fract_transf_matrix[1][1]    0.022561 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012675 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 301 1 NAP NAP . 
C 3 GOL A 1 302 2 GOL GOL . 
D 4 HOH A 1 401 96 HOH HOH . 
D 4 HOH A 2 402 52 HOH HOH . 
D 4 HOH A 3 403 37 HOH HOH . 
D 4 HOH A 4 404 24 HOH HOH . 
D 4 HOH A 5 405 27 HOH HOH . 
D 4 HOH A 6 406 32 HOH HOH . 
D 4 HOH A 7 407 111 HOH HOH . 
D 4 HOH A 8 408 50 HOH HOH . 
D 4 HOH A 9 409 72 HOH HOH . 
D 4 HOH A 10 410 93 HOH HOH . 
D 4 HOH A 11 411 13 HOH HOH . 
D 4 HOH A 12 412 80 HOH HOH . 
D 4 HOH A 13 413 74 HOH HOH . 
D 4 HOH A 14 414 58 HOH HOH . 
D 4 HOH A 15 415 25 HOH HOH . 
D 4 HOH A 16 416 46 HOH HOH . 
D 4 HOH A 17 417 78 HOH HOH . 
D 4 HOH A 18 418 117 HOH HOH . 
D 4 HOH A 19 419 70 HOH HOH . 
D 4 HOH A 20 420 110 HOH HOH . 
D 4 HOH A 21 421 113 HOH HOH . 
D 4 HOH A 22 422 112 HOH HOH . 
D 4 HOH A 23 423 97 HOH HOH . 
D 4 HOH A 24 424 62 HOH HOH . 
D 4 HOH A 25 425 102 HOH HOH . 
D 4 HOH A 26 426 54 HOH HOH . 
D 4 HOH A 27 427 5 HOH HOH . 
D 4 HOH A 28 428 81 HOH HOH . 
D 4 HOH A 29 429 20 HOH HOH . 
D 4 HOH A 30 430 18 HOH HOH . 
D 4 HOH A 31 431 94 HOH HOH . 
D 4 HOH A 32 432 26 HOH HOH . 
D 4 HOH A 33 433 89 HOH HOH . 
D 4 HOH A 34 434 68 HOH HOH . 
D 4 HOH A 35 435 118 HOH HOH . 
D 4 HOH A 36 436 55 HOH HOH . 
D 4 HOH A 37 437 101 HOH HOH . 
D 4 HOH A 38 438 75 HOH HOH . 
D 4 HOH A 39 439 71 HOH HOH . 
D 4 HOH A 40 440 1 HOH HOH . 
D 4 HOH A 41 441 2 HOH HOH . 
D 4 HOH A 42 442 3 HOH HOH . 
D 4 HOH A 43 443 4 HOH HOH . 
D 4 HOH A 44 444 6 HOH HOH . 
D 4 HOH A 45 445 7 HOH HOH . 
D 4 HOH A 46 446 8 HOH HOH . 
D 4 HOH A 47 447 9 HOH HOH . 
D 4 HOH A 48 448 10 HOH HOH . 
D 4 HOH A 49 449 11 HOH HOH . 
D 4 HOH A 50 450 12 HOH HOH . 
D 4 HOH A 51 451 14 HOH HOH . 
D 4 HOH A 52 452 15 HOH HOH . 
D 4 HOH A 53 453 16 HOH HOH . 
D 4 HOH A 54 454 17 HOH HOH . 
D 4 HOH A 55 455 19 HOH HOH . 
D 4 HOH A 56 456 21 HOH HOH . 
D 4 HOH A 57 457 22 HOH HOH . 
D 4 HOH A 58 458 23 HOH HOH . 
D 4 HOH A 59 459 28 HOH HOH . 
D 4 HOH A 60 460 29 HOH HOH . 
D 4 HOH A 61 461 30 HOH HOH . 
D 4 HOH A 62 462 31 HOH HOH . 
D 4 HOH A 63 463 33 HOH HOH . 
D 4 HOH A 64 464 34 HOH HOH . 
D 4 HOH A 65 465 35 HOH HOH . 
D 4 HOH A 66 466 36 HOH HOH . 
D 4 HOH A 67 467 38 HOH HOH . 
D 4 HOH A 68 468 39 HOH HOH . 
D 4 HOH A 69 469 40 HOH HOH . 
D 4 HOH A 70 470 41 HOH HOH . 
D 4 HOH A 71 471 42 HOH HOH . 
D 4 HOH A 72 472 43 HOH HOH . 
D 4 HOH A 73 473 44 HOH HOH . 
D 4 HOH A 74 474 45 HOH HOH . 
D 4 HOH A 75 475 47 HOH HOH . 
D 4 HOH A 76 476 48 HOH HOH . 
D 4 HOH A 77 477 49 HOH HOH . 
D 4 HOH A 78 478 51 HOH HOH . 
D 4 HOH A 79 479 53 HOH HOH . 
D 4 HOH A 80 480 56 HOH HOH . 
D 4 HOH A 81 481 57 HOH HOH . 
D 4 HOH A 82 482 59 HOH HOH . 
D 4 HOH A 83 483 60 HOH HOH . 
D 4 HOH A 84 484 61 HOH HOH . 
D 4 HOH A 85 485 63 HOH HOH . 
D 4 HOH A 86 486 64 HOH HOH . 
D 4 HOH A 87 487 65 HOH HOH . 
D 4 HOH A 88 488 66 HOH HOH . 
D 4 HOH A 89 489 69 HOH HOH . 
D 4 HOH A 90 490 73 HOH HOH . 
D 4 HOH A 91 491 76 HOH HOH . 
D 4 HOH A 92 492 77 HOH HOH . 
D 4 HOH A 93 493 79 HOH HOH . 
D 4 HOH A 94 494 82 HOH HOH . 
D 4 HOH A 95 495 83 HOH HOH . 
D 4 HOH A 96 496 85 HOH HOH . 
D 4 HOH A 97 497 87 HOH HOH . 
D 4 HOH A 98 498 88 HOH HOH . 
D 4 HOH A 99 499 90 HOH HOH . 
D 4 HOH A 100 500 91 HOH HOH . 
D 4 HOH A 101 501 92 HOH HOH . 
D 4 HOH A 102 502 95 HOH HOH . 
D 4 HOH A 103 503 98 HOH HOH . 
D 4 HOH A 104 504 99 HOH HOH . 
D 4 HOH A 105 505 100 HOH HOH . 
D 4 HOH A 106 506 103 HOH HOH . 
D 4 HOH A 107 507 104 HOH HOH . 
D 4 HOH A 108 508 105 HOH HOH . 
D 4 HOH A 109 509 106 HOH HOH . 
D 4 HOH A 110 510 107 HOH HOH . 
D 4 HOH A 111 511 108 HOH HOH . 
D 4 HOH A 112 512 109 HOH HOH . 
D 4 HOH A 113 513 114 HOH HOH . 
D 4 HOH A 114 514 115 HOH HOH . 
D 4 HOH A 115 515 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -28.25 -17.026 2.988 1 47.45 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . C 3 -28.383 -18.426 2.919 1 50.72 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . C 3 -29.489 -16.437 3.639 1 51.96 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . C 3 -29.924 -15.275 2.912 1 48.89 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . C 3 -29.06 -16 5.008 1 51.64 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . C 3 -28.11 -14.973 4.694 1 50.9 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#