data_4PMP # _model_server_result.job_id y2Bm-3_yA1Iyol_96zr65g _model_server_result.datetime_utc '2025-02-27 21:16:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4PMP # _exptl.entry_id 4PMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.447 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopropyl-1-[3-(1,3-thiazol-2-yl)benzyl]-3-[4-(trifluoromethoxy)phenyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4PMP _cell.length_a 75.543 _cell.length_b 75.543 _cell.length_c 112.508 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H18 F3 N3 O2 S' _chem_comp.formula_weight 433.447 _chem_comp.id 31W _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopropyl-1-[3-(1,3-thiazol-2-yl)benzyl]-3-[4-(trifluoromethoxy)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 31W doub 1 n y C19 C17 31W sing 2 n y C20 C14 31W sing 3 n y F2 C18 31W sing 4 n n C2 C1 31W sing 5 n n C2 C3 31W sing 6 n n C1 C3 31W sing 7 n n C1 N 31W sing 8 n n C17 O 31W sing 9 n n C17 C16 31W doub 10 n y C14 N2 31W sing 11 n n C14 C15 31W doub 12 n y O C18 31W sing 13 n n N2 C 31W sing 14 n n C18 F 31W sing 15 n n C18 F1 31W sing 16 n n N C 31W sing 17 n n N C4 31W sing 18 n n C O1 31W doub 19 n n C16 C15 31W sing 20 n y C4 C5 31W sing 21 n n C5 C13 31W doub 22 n y C5 C6 31W sing 23 n y C13 C12 31W sing 24 n y C6 C7 31W doub 25 n y C12 C11 31W doub 26 n y C7 C11 31W sing 27 n y C7 C8 31W sing 28 n n S C8 31W sing 29 n y S C10 31W sing 30 n y C8 N1 31W doub 31 n y C10 C9 31W doub 32 n y N1 C9 31W sing 33 n y C2 H1 31W sing 34 n n C2 H2 31W sing 35 n n C3 H3 31W sing 36 n n C3 H4 31W sing 37 n n C9 H5 31W sing 38 n n C10 H6 31W sing 39 n n C11 H7 31W sing 40 n n C12 H8 31W sing 41 n n C13 H9 31W sing 42 n n C15 H10 31W sing 43 n n C20 H11 31W sing 44 n n N2 H12 31W sing 45 n n C19 H13 31W sing 46 n n C16 H14 31W sing 47 n n C1 H15 31W sing 48 n n C4 H16 31W sing 49 n n C4 H17 31W sing 50 n n C6 H18 31W sing 51 n n # _atom_sites.entry_id 4PMP _atom_sites.fract_transf_matrix[1][1] 0.013237 _atom_sites.fract_transf_matrix[1][2] 0.007643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 31W A 1 801 1 31W MRK . C 3 CL A 1 802 1 CL CL . D 4 ACT A 1 803 2 ACT ACT . E 4 ACT A 1 804 3 ACT ACT . F 4 ACT A 1 805 4 ACT ACT . G 5 HOH A 1 901 38 HOH HOH . G 5 HOH A 2 902 33 HOH HOH . G 5 HOH A 3 903 3 HOH HOH . G 5 HOH A 4 904 49 HOH HOH . G 5 HOH A 5 905 50 HOH HOH . G 5 HOH A 6 906 128 HOH HOH . G 5 HOH A 7 907 48 HOH HOH . G 5 HOH A 8 908 74 HOH HOH . G 5 HOH A 9 909 95 HOH HOH . G 5 HOH A 10 910 124 HOH HOH . G 5 HOH A 11 911 99 HOH HOH . G 5 HOH A 12 912 103 HOH HOH . G 5 HOH A 13 913 70 HOH HOH . G 5 HOH A 14 914 40 HOH HOH . G 5 HOH A 15 915 88 HOH HOH . G 5 HOH A 16 916 68 HOH HOH . G 5 HOH A 17 917 93 HOH HOH . G 5 HOH A 18 918 132 HOH HOH . G 5 HOH A 19 919 16 HOH HOH . G 5 HOH A 20 920 105 HOH HOH . G 5 HOH A 21 921 111 HOH HOH . G 5 HOH A 22 922 64 HOH HOH . G 5 HOH A 23 923 69 HOH HOH . G 5 HOH A 24 924 162 HOH HOH . G 5 HOH A 25 925 123 HOH HOH . G 5 HOH A 26 926 32 HOH HOH . G 5 HOH A 27 927 171 HOH HOH . G 5 HOH A 28 928 66 HOH HOH . G 5 HOH A 29 929 35 HOH HOH . G 5 HOH A 30 930 58 HOH HOH . G 5 HOH A 31 931 84 HOH HOH . G 5 HOH A 32 932 61 HOH HOH . G 5 HOH A 33 933 154 HOH HOH . G 5 HOH A 34 934 52 HOH HOH . G 5 HOH A 35 935 136 HOH HOH . G 5 HOH A 36 936 147 HOH HOH . G 5 HOH A 37 937 8 HOH HOH . G 5 HOH A 38 938 71 HOH HOH . G 5 HOH A 39 939 112 HOH HOH . G 5 HOH A 40 940 26 HOH HOH . G 5 HOH A 41 941 104 HOH HOH . G 5 HOH A 42 942 96 HOH HOH . G 5 HOH A 43 943 129 HOH HOH . G 5 HOH A 44 944 28 HOH HOH . G 5 HOH A 45 945 53 HOH HOH . G 5 HOH A 46 946 4 HOH HOH . G 5 HOH A 47 947 152 HOH HOH . G 5 HOH A 48 948 37 HOH HOH . G 5 HOH A 49 949 127 HOH HOH . G 5 HOH A 50 950 169 HOH HOH . G 5 HOH A 51 951 21 HOH HOH . G 5 HOH A 52 952 145 HOH HOH . G 5 HOH A 53 953 148 HOH HOH . G 5 HOH A 54 954 110 HOH HOH . G 5 HOH A 55 955 114 HOH HOH . G 5 HOH A 56 956 87 HOH HOH . G 5 HOH A 57 957 118 HOH HOH . G 5 HOH A 58 958 125 HOH HOH . G 5 HOH A 59 959 156 HOH HOH . G 5 HOH A 60 960 138 HOH HOH . G 5 HOH A 61 961 119 HOH HOH . G 5 HOH A 62 962 164 HOH HOH . G 5 HOH A 63 963 155 HOH HOH . G 5 HOH A 64 964 160 HOH HOH . G 5 HOH A 65 965 1 HOH HOH . G 5 HOH A 66 966 2 HOH HOH . G 5 HOH A 67 967 5 HOH HOH . G 5 HOH A 68 968 6 HOH HOH . G 5 HOH A 69 969 7 HOH HOH . G 5 HOH A 70 970 9 HOH HOH . G 5 HOH A 71 971 10 HOH HOH . G 5 HOH A 72 972 11 HOH HOH . G 5 HOH A 73 973 12 HOH HOH . G 5 HOH A 74 974 13 HOH HOH . G 5 HOH A 75 975 14 HOH HOH . G 5 HOH A 76 976 15 HOH HOH . G 5 HOH A 77 977 17 HOH HOH . G 5 HOH A 78 978 18 HOH HOH . G 5 HOH A 79 979 19 HOH HOH . G 5 HOH A 80 980 20 HOH HOH . G 5 HOH A 81 981 22 HOH HOH . G 5 HOH A 82 982 23 HOH HOH . G 5 HOH A 83 983 24 HOH HOH . G 5 HOH A 84 984 25 HOH HOH . G 5 HOH A 85 985 27 HOH HOH . G 5 HOH A 86 986 29 HOH HOH . G 5 HOH A 87 987 30 HOH HOH . G 5 HOH A 88 988 31 HOH HOH . G 5 HOH A 89 989 34 HOH HOH . G 5 HOH A 90 990 36 HOH HOH . G 5 HOH A 91 991 39 HOH HOH . G 5 HOH A 92 992 41 HOH HOH . G 5 HOH A 93 993 42 HOH HOH . G 5 HOH A 94 994 43 HOH HOH . G 5 HOH A 95 995 44 HOH HOH . G 5 HOH A 96 996 45 HOH HOH . G 5 HOH A 97 997 46 HOH HOH . G 5 HOH A 98 998 47 HOH HOH . G 5 HOH A 99 999 51 HOH HOH . G 5 HOH A 100 1000 54 HOH HOH . G 5 HOH A 101 1001 55 HOH HOH . G 5 HOH A 102 1002 56 HOH HOH . G 5 HOH A 103 1003 57 HOH HOH . G 5 HOH A 104 1004 59 HOH HOH . G 5 HOH A 105 1005 60 HOH HOH . G 5 HOH A 106 1006 62 HOH HOH . G 5 HOH A 107 1007 63 HOH HOH . G 5 HOH A 108 1008 65 HOH HOH . G 5 HOH A 109 1009 67 HOH HOH . G 5 HOH A 110 1010 72 HOH HOH . G 5 HOH A 111 1011 73 HOH HOH . G 5 HOH A 112 1012 75 HOH HOH . G 5 HOH A 113 1013 76 HOH HOH . G 5 HOH A 114 1014 77 HOH HOH . G 5 HOH A 115 1015 78 HOH HOH . G 5 HOH A 116 1016 79 HOH HOH . G 5 HOH A 117 1017 80 HOH HOH . G 5 HOH A 118 1018 81 HOH HOH . G 5 HOH A 119 1019 82 HOH HOH . G 5 HOH A 120 1020 83 HOH HOH . G 5 HOH A 121 1021 85 HOH HOH . G 5 HOH A 122 1022 86 HOH HOH . G 5 HOH A 123 1023 89 HOH HOH . G 5 HOH A 124 1024 90 HOH HOH . G 5 HOH A 125 1025 91 HOH HOH . G 5 HOH A 126 1026 92 HOH HOH . G 5 HOH A 127 1027 94 HOH HOH . G 5 HOH A 128 1028 97 HOH HOH . G 5 HOH A 129 1029 98 HOH HOH . G 5 HOH A 130 1030 100 HOH HOH . G 5 HOH A 131 1031 101 HOH HOH . G 5 HOH A 132 1032 102 HOH HOH . G 5 HOH A 133 1033 106 HOH HOH . G 5 HOH A 134 1034 107 HOH HOH . G 5 HOH A 135 1035 108 HOH HOH . G 5 HOH A 136 1036 109 HOH HOH . G 5 HOH A 137 1037 113 HOH HOH . G 5 HOH A 138 1038 115 HOH HOH . G 5 HOH A 139 1039 116 HOH HOH . G 5 HOH A 140 1040 117 HOH HOH . G 5 HOH A 141 1041 120 HOH HOH . G 5 HOH A 142 1042 121 HOH HOH . G 5 HOH A 143 1043 122 HOH HOH . G 5 HOH A 144 1044 126 HOH HOH . G 5 HOH A 145 1045 130 HOH HOH . G 5 HOH A 146 1046 131 HOH HOH . G 5 HOH A 147 1047 133 HOH HOH . G 5 HOH A 148 1048 134 HOH HOH . G 5 HOH A 149 1049 135 HOH HOH . G 5 HOH A 150 1050 137 HOH HOH . G 5 HOH A 151 1051 139 HOH HOH . G 5 HOH A 152 1052 140 HOH HOH . G 5 HOH A 153 1053 141 HOH HOH . G 5 HOH A 154 1054 142 HOH HOH . G 5 HOH A 155 1055 143 HOH HOH . G 5 HOH A 156 1056 144 HOH HOH . G 5 HOH A 157 1057 146 HOH HOH . G 5 HOH A 158 1058 149 HOH HOH . G 5 HOH A 159 1059 150 HOH HOH . G 5 HOH A 160 1060 151 HOH HOH . G 5 HOH A 161 1061 153 HOH HOH . G 5 HOH A 162 1062 157 HOH HOH . G 5 HOH A 163 1063 158 HOH HOH . G 5 HOH A 164 1064 159 HOH HOH . G 5 HOH A 165 1065 161 HOH HOH . G 5 HOH A 166 1066 163 HOH HOH . G 5 HOH A 167 1067 165 HOH HOH . G 5 HOH A 168 1068 166 HOH HOH . G 5 HOH A 169 1069 167 HOH HOH . G 5 HOH A 170 1070 168 HOH HOH . G 5 HOH A 171 1071 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 31W . . . B 2 31.422 -34.656 -9.874 1 48.66 ? C2 31W 801 A 1 HETATM 2 C C3 31W . . . B 2 31.812 -35.616 -8.792 1 50.08 ? C3 31W 801 A 1 HETATM 3 C C5 31W . . . B 2 31.545 -33.688 -5.917 1 43.83 ? C5 31W 801 A 1 HETATM 4 C C7 31W . . . B 2 30.342 -34.218 -3.878 1 43.93 ? C7 31W 801 A 1 HETATM 5 C C9 31W . . . B 2 27.692 -34.409 -1.421 1 43 ? C9 31W 801 A 1 HETATM 6 C C10 31W . . . B 2 26.832 -33.882 -2.303 1 44.08 ? C10 31W 801 A 1 HETATM 7 C C11 31W . . . B 2 31.503 -34.779 -3.345 1 44.36 ? C11 31W 801 A 1 HETATM 8 C C12 31W . . . B 2 32.663 -34.823 -4.101 1 42.93 ? C12 31W 801 A 1 HETATM 9 C C13 31W . . . B 2 32.681 -34.284 -5.379 1 43.15 ? C13 31W 801 A 1 HETATM 10 C C15 31W . . . B 2 36.915 -32.135 -7.733 1 42.12 ? C15 31W 801 A 1 HETATM 11 C C18 31W . . . B 2 39.826 -28.936 -8.845 1 44.95 ? C18 31W 801 A 1 HETATM 12 C C20 31W . . . B 2 36.729 -31.853 -10.11 1 44.61 ? C20 31W 801 A 1 HETATM 13 O O1 31W . . . B 2 33.924 -31.513 -7.388 1 45.6 ? O1 31W 801 A 1 HETATM 14 C C 31W . . . B 2 33.869 -32.517 -8.085 1 45.04 ? C 31W 801 A 1 HETATM 15 N N2 31W . . . B 2 34.916 -32.931 -8.854 1 43.47 ? N2 31W 801 A 1 HETATM 16 C C14 31W . . . B 2 36.197 -32.318 -8.911 1 42.35 ? C14 31W 801 A 1 HETATM 17 C C19 31W . . . B 2 37.943 -31.184 -10.126 1 45.57 ? C19 31W 801 A 1 HETATM 18 C C17 31W . . . B 2 38.639 -30.983 -8.938 1 44.91 ? C17 31W 801 A 1 HETATM 19 O O 31W . . . B 2 39.863 -30.28 -8.88 1 43.97 ? O 31W 801 A 1 HETATM 20 F F2 31W . . . B 2 39.355 -28.412 -9.959 1 44.3 ? F2 31W 801 A 1 HETATM 21 F F1 31W . . . B 2 39.092 -28.478 -7.845 1 46.68 ? F1 31W 801 A 1 HETATM 22 F F 31W . . . B 2 41.026 -28.422 -8.686 1 43.26 ? F 31W 801 A 1 HETATM 23 C C16 31W . . . B 2 38.13 -31.47 -7.744 1 42.95 ? C16 31W 801 A 1 HETATM 24 N N 31W . . . B 2 32.71 -33.302 -8.119 1 46.44 ? N 31W 801 A 1 HETATM 25 C C1 31W . . . B 2 32.666 -34.429 -9.083 1 49.57 ? C1 31W 801 A 1 HETATM 26 C C4 31W . . . B 2 31.585 -32.956 -7.241 1 44.88 ? C4 31W 801 A 1 HETATM 27 C C6 31W . . . B 2 30.371 -33.684 -5.165 1 43.81 ? C6 31W 801 A 1 HETATM 28 C C8 31W . . . B 2 29.09 -34.185 -3.098 1 44.34 ? C8 31W 801 A 1 HETATM 29 S S 31W . . . B 2 27.62 -33.572 -3.779 1 46.16 ? S 31W 801 A 1 HETATM 30 N N1 31W . . . B 2 28.984 -34.588 -1.863 1 43.78 ? N1 31W 801 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #